Wall clock time and date at job start Tue Mar 31 2020 23:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00255 * 2 1 4 4 H 1.48496 * 109.46871 * 269.99719 * 3 2 1 5 5 H 1.48502 * 109.47188 * 29.99531 * 3 2 1 6 6 H 1.48494 * 109.47114 * 149.99688 * 3 2 1 7 7 C 1.37886 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99495 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99954 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47437 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47591 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47142 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.47287 * 304.99659 * 12 11 10 14 14 N 1.46899 * 109.47486 * 65.00209 * 12 11 10 15 15 C 1.50701 * 109.46886 * 185.00405 * 12 11 10 16 16 O 1.21276 * 119.99883 * 259.99516 * 15 12 11 17 17 N 1.34768 * 120.00260 * 80.00047 * 15 12 11 18 18 C 1.39418 * 120.00234 * 174.90356 * 17 15 12 19 19 C 1.38991 * 119.69330 * 185.09953 * 18 17 15 20 20 C 1.38470 * 119.08761 * 179.77109 * 19 18 17 21 21 Br 1.89099 * 120.76304 * 180.26735 * 20 19 18 22 22 C 1.38952 * 118.47417 * 0.50224 * 20 19 18 23 23 C 1.38026 * 119.29767 * 359.74459 * 22 20 19 24 24 N 1.31954 * 120.86047 * 359.97438 * 23 22 20 25 25 H 0.97002 * 119.99837 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47529 * 59.99530 * 9 7 2 27 27 H 1.09000 * 109.47080 * 299.99735 * 9 7 2 28 28 H 1.09005 * 109.46481 * 60.00029 * 10 9 7 29 29 H 1.08999 * 109.46751 * 300.00483 * 10 9 7 30 30 H 1.09002 * 109.46793 * 59.99846 * 11 10 9 31 31 H 1.09000 * 109.47214 * 300.00435 * 11 10 9 32 32 H 1.00901 * 111.00005 * 59.99550 * 14 12 11 33 33 H 1.00896 * 111.00470 * 183.95250 * 14 12 11 34 34 H 0.96996 * 120.00244 * 354.90417 * 17 15 12 35 35 H 1.08001 * 120.45606 * 0.02795 * 19 18 17 36 36 H 1.07997 * 120.34874 * 179.76628 * 22 20 19 37 37 H 1.07999 * 119.57127 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4801 -4.9872 0.0012 12 6 2.4743 -6.1501 0.0018 13 1 3.1584 -6.0437 -0.8400 14 7 3.2373 -6.1414 1.2571 15 6 1.7248 -7.4517 -0.1215 16 8 1.5125 -8.1249 0.8647 17 7 1.2906 -7.8677 -1.3276 18 6 0.6918 -9.1198 -1.4591 19 6 0.3429 -9.5870 -2.7208 20 6 -0.2469 -10.8344 -2.8374 21 35 -0.7337 -11.5196 -4.5313 22 6 -0.4773 -11.5689 -1.6806 23 6 -0.1095 -11.0398 -0.4600 24 7 0.4561 -9.8503 -0.3807 25 1 -0.4850 0.8401 -0.0004 26 1 0.6245 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 2.8717 -3.6044 0.8906 29 1 2.8718 -3.6044 -0.8894 30 1 0.8531 -5.0451 -0.8886 31 1 0.8537 -5.0446 0.8913 32 1 2.6250 -6.2387 2.0531 33 1 3.9450 -6.8605 1.2551 34 1 1.3948 -7.2960 -2.1042 35 1 0.5330 -8.9872 -3.5986 36 1 -0.9390 -12.5437 -1.7361 37 1 -0.2861 -11.6071 0.4418 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691641872.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:29 Heat of formation + Delta-G solvation = -23.863292 kcal Electronic energy + Delta-G solvation = -20488.146251 eV Core-core repulsion = 17117.505487 eV Total energy + Delta-G solvation = -3370.640764 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.01585 -40.45992 -37.20534 -36.19680 -35.24079 -34.36431 -33.12122 -31.46872 -31.05389 -29.54673 -27.01514 -24.97144 -24.74275 -23.32712 -21.74617 -21.20354 -19.23574 -18.44509 -18.43088 -17.32960 -17.23711 -16.76149 -16.44803 -16.34112 -16.00346 -15.54757 -15.19524 -14.91808 -14.52667 -14.28254 -14.17896 -13.64571 -13.31750 -13.12536 -12.87878 -12.72746 -12.48765 -12.37517 -12.19394 -11.83142 -11.66613 -11.45514 -11.37460 -11.23176 -11.00254 -10.51605 -10.46034 -10.43986 -9.69270 -9.47357 -8.16294 -6.26460 -0.11664 -0.09915 0.30706 1.42036 1.43537 1.46637 1.54806 1.75818 2.44180 2.67532 3.17020 3.20830 3.49648 3.68631 3.80034 3.86846 3.96671 4.05731 4.14765 4.40530 4.51526 4.52614 4.67938 4.83260 4.92760 5.04769 5.14840 5.28208 5.36133 5.53307 5.62430 5.86061 5.94589 5.96219 6.11857 6.31598 6.44606 6.78475 6.91862 7.14833 7.42647 8.95514 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.018576 B = 0.002036 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.981647 B =13748.367162 C =14811.168021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.020 3.980 10 C -0.084 4.084 11 C -0.096 4.096 12 C 0.093 3.907 13 H 0.131 0.869 14 N -0.816 5.816 15 C 0.478 3.522 16 O -0.514 6.514 17 N -0.650 5.650 18 C 0.349 3.651 19 C -0.177 4.177 20 C -0.030 4.030 21 Br -0.016 7.016 22 C -0.171 4.171 23 C 0.130 3.870 24 N -0.508 5.508 25 H 0.262 0.738 26 H -0.007 1.007 27 H -0.017 1.017 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.347 0.653 33 H 0.350 0.650 34 H 0.436 0.564 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.391 -29.140 -10.657 31.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.788 3.212 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.576 4.576 8 H 0.079 0.921 9 C -0.017 4.017 10 C -0.121 4.121 11 C -0.134 4.134 12 C -0.023 4.023 13 H 0.149 0.851 14 N -0.345 5.345 15 C 0.263 3.737 16 O -0.385 6.385 17 N -0.299 5.299 18 C 0.117 3.883 19 C -0.202 4.202 20 C -0.118 4.118 21 Br 0.069 6.931 22 C -0.194 4.194 23 C -0.028 4.028 24 N -0.223 5.223 25 H 0.071 0.929 26 H 0.011 0.989 27 H 0.001 0.999 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.160 0.840 33 H 0.164 0.836 34 H 0.276 0.724 35 H 0.186 0.814 36 H 0.189 0.811 37 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 0.467 -28.590 -9.919 30.265 hybrid contribution -0.540 0.154 -0.482 0.740 sum -0.073 -28.436 -10.401 30.279 Atomic orbital electron populations 1.70102 1.07821 1.27606 1.52157 1.25992 0.95743 1.03376 0.94982 0.85477 0.78666 0.78564 0.78534 1.19582 1.21047 1.18791 1.21743 0.93604 0.92445 1.49804 0.92110 1.19064 0.94613 0.93524 0.94459 1.21281 0.97505 0.91874 1.01457 1.21492 0.96711 0.93311 1.01927 1.21685 0.95370 0.88670 0.96609 0.85123 1.59058 1.17475 1.54824 1.03102 1.22948 0.78993 0.89204 0.82521 1.90769 1.54089 1.56683 1.36999 1.43817 1.57522 1.15465 1.13058 1.18738 0.92733 0.87349 0.89473 1.21623 1.03919 0.97078 0.97573 1.22123 1.00234 0.95933 0.93537 1.96824 1.91022 1.85625 1.19584 1.22333 1.03002 1.02794 0.91238 1.23179 0.91218 0.89766 0.98672 1.67660 1.15127 1.07990 1.31539 0.92928 0.98862 0.99887 0.92502 0.92227 0.90631 0.93600 0.83958 0.83606 0.72392 0.81412 0.81141 0.79623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.51 13.29 21.45 0.28 -57.22 16 2 C 0.00 -0.22 5.46 84.66 0.46 0.25 16 3 Si 0.96 44.47 29.54 68.60 2.03 46.49 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.54 -30.64 9.11 25.60 0.23 -30.41 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 9 C 0.02 1.07 4.97 29.85 0.15 1.22 16 10 C -0.08 -3.26 5.04 30.59 0.15 -3.10 16 11 C -0.10 -2.97 4.84 30.59 0.15 -2.83 16 12 C 0.09 2.23 3.15 44.17 0.14 2.37 16 13 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 14 N -0.82 -20.50 8.44 -171.81 -1.45 -21.95 16 15 C 0.48 12.25 7.03 87.66 0.62 12.86 16 16 O -0.51 -16.84 14.52 -3.02 -0.04 -16.89 16 17 N -0.65 -13.18 5.39 -308.48 -1.66 -14.84 16 18 C 0.35 7.70 7.42 132.90 0.99 8.69 16 19 C -0.18 -2.91 9.72 22.51 0.22 -2.69 16 20 C -0.03 -0.46 6.27 22.50 0.14 -0.32 16 21 Br -0.02 -0.21 33.77 -20.37 -0.69 -0.90 16 22 C -0.17 -2.41 9.89 22.39 0.22 -2.19 16 23 C 0.13 2.36 11.17 84.62 0.95 3.31 16 24 N -0.51 -13.00 7.89 -193.08 -1.52 -14.52 16 25 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 26 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 27 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 28 H 0.06 2.30 7.75 -2.38 -0.02 2.28 16 29 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.35 9.45 8.58 -89.69 -0.77 8.68 16 33 H 0.35 7.48 9.06 -89.70 -0.81 6.66 16 34 H 0.44 5.75 8.70 -92.71 -0.81 4.94 16 35 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 37 H 0.19 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -74.52 341.39 0.09 -74.43 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -1.27 Total: 18.25 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 4.41 Total: -12.85 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -4.35 Total: -108.54 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.04 Total: -16.89 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 35 Polarization: -0.21 SS G_CDS: -0.69 Total: -0.90 kcal Total: -74.52 0.09 -74.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691641872.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.565 kcal (2) G-P(sol) polarization free energy of solvation -74.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds