Wall clock time and date at job start Tue Mar 31 2020 23:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48498 * 109.47370 * 269.99624 * 3 2 1 5 5 H 1.48503 * 109.47420 * 29.99891 * 3 2 1 6 6 H 1.48504 * 109.46956 * 149.99786 * 3 2 1 7 7 C 1.38801 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00362 * 0.02562 * 7 2 1 9 9 S 1.76202 * 120.00205 * 180.02562 * 7 2 1 10 10 C 1.76200 * 100.00211 * 175.60230 * 9 7 2 11 11 C 1.39108 * 120.19082 * 7.66834 * 10 9 7 12 12 C 1.37907 * 120.04916 * 180.30363 * 11 10 9 13 13 C 1.38660 * 120.44012 * 359.67075 * 12 11 10 14 14 C 1.37807 * 120.37734 * 0.02562 * 13 12 11 15 15 C 1.39670 * 119.94007 * 0.02562 * 14 13 12 16 16 C 1.47430 * 120.21425 * 179.97438 * 15 14 13 17 17 O 1.21618 * 119.99757 * 124.13564 * 16 15 14 18 18 N 1.34773 * 120.00036 * 304.41440 * 16 15 14 19 19 C 1.46387 * 119.70232 * 3.45554 * 18 16 15 20 20 C 1.53659 * 109.24942 * 115.72428 * 19 18 16 21 21 S 1.81663 * 108.90641 * 58.42390 * 20 19 18 22 22 O 1.42093 * 108.65388 * 189.97826 * 21 20 19 23 23 O 1.42105 * 108.72388 * 58.70834 * 21 20 19 24 24 C 1.81663 * 101.38912 * 304.33236 * 21 20 19 25 25 C 1.46395 * 119.69973 * 183.73183 * 18 16 15 26 26 H 0.97002 * 120.00014 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.97451 * 359.97438 * 11 10 9 28 28 H 1.08007 * 119.78115 * 179.69897 * 12 11 10 29 29 H 1.08002 * 119.80900 * 180.02562 * 13 12 11 30 30 H 1.08006 * 120.02814 * 180.02562 * 14 13 12 31 31 H 1.08995 * 109.46043 * 235.73927 * 19 18 16 32 32 H 1.09003 * 109.45986 * 355.71843 * 19 18 16 33 33 H 1.09000 * 109.66432 * 298.54526 * 20 19 18 34 34 H 1.08993 * 109.49104 * 178.20312 * 20 19 18 35 35 H 1.09003 * 109.55678 * 295.72052 * 24 21 20 36 36 H 1.09002 * 109.55862 * 175.40198 * 24 21 20 37 37 H 1.09006 * 109.46059 * 4.28868 * 25 18 16 38 38 H 1.08999 * 109.46560 * 124.26465 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4401 0.7001 7 6 2.0095 -1.2021 0.0005 8 1 1.4695 -2.1374 0.0005 9 16 3.7715 -1.2022 0.0012 10 6 4.0773 -2.9323 0.1348 11 6 3.0253 -3.8378 0.0433 12 6 3.2672 -5.1909 0.1545 13 6 4.5571 -5.6602 0.3509 14 6 5.6134 -4.7794 0.4380 15 6 5.3863 -3.4056 0.3286 16 6 6.5118 -2.4579 0.4214 17 8 6.7153 -1.6656 -0.4786 18 7 7.3186 -2.4734 1.5009 19 6 7.1182 -3.4830 2.5417 20 6 8.3508 -4.3984 2.6036 21 16 9.8194 -3.3856 2.9467 22 8 10.9773 -4.1910 2.7742 23 8 9.6249 -2.7023 4.1774 24 6 9.7457 -2.1765 1.5930 25 6 8.3835 -1.4766 1.6248 26 1 -0.4850 0.8401 -0.0004 27 1 2.0176 -3.4805 -0.1096 28 1 2.4465 -5.8899 0.0877 29 1 4.7349 -6.7220 0.4362 30 1 6.6159 -5.1511 0.5906 31 1 6.9801 -2.9901 3.5040 32 1 6.2341 -4.0759 2.3072 33 1 8.4756 -4.9106 1.6496 34 1 8.2195 -5.1320 3.3989 35 1 9.8704 -2.6888 0.6390 36 1 10.5381 -1.4387 1.7191 37 1 8.3183 -0.7706 0.7968 38 1 8.2722 -0.9414 2.5679 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729368331.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:47 Heat of formation + Delta-G solvation = -85.605429 kcal Electronic energy + Delta-G solvation = -25350.749232 eV Core-core repulsion = 21604.362640 eV Total energy + Delta-G solvation = -3746.386592 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.059 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.58236 -39.27133 -38.20804 -37.49186 -37.09788 -34.86862 -33.61755 -32.14878 -31.96034 -31.03609 -28.06241 -25.81861 -25.13760 -23.63706 -23.53630 -21.28846 -20.06542 -19.56353 -18.71788 -17.98055 -17.63986 -17.36199 -17.15945 -16.93588 -16.84899 -16.52025 -16.11222 -15.62393 -15.24010 -15.14721 -14.80520 -14.41547 -14.25766 -13.90679 -13.79459 -13.67219 -13.53186 -13.25724 -13.23298 -13.14487 -13.06554 -13.01359 -12.85759 -12.66579 -12.29665 -11.81027 -11.53482 -11.43567 -11.30154 -11.14001 -10.63576 -10.59390 -10.08245 -9.79452 -8.74971 -8.62232 -6.36927 -0.97958 0.06714 0.42011 0.96421 1.22520 1.35074 1.48877 1.56273 1.69044 1.78120 2.11177 2.51641 2.68037 2.71608 2.83512 2.97750 3.27871 3.42597 3.73351 3.87646 3.96780 4.08779 4.15665 4.22389 4.26500 4.52752 4.55780 4.68042 4.69122 4.75963 4.76750 4.87466 5.03489 5.28886 5.35847 5.42625 5.59947 5.63697 5.99238 6.05240 6.14593 6.79495 6.96770 8.48264 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.015758 B = 0.003839 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.441848 B = 7291.690838 C = 8478.618006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.056 3.944 3 Si 0.903 3.097 4 H -0.263 1.263 5 H -0.252 1.252 6 H -0.235 1.235 7 C -0.558 4.558 8 H 0.088 0.912 9 S -0.048 6.048 10 C -0.050 4.050 11 C -0.161 4.161 12 C -0.076 4.076 13 C -0.135 4.135 14 C -0.067 4.067 15 C -0.160 4.160 16 C 0.571 3.429 17 O -0.551 6.551 18 N -0.617 5.617 19 C 0.095 3.905 20 C -0.607 4.607 21 S 2.433 3.567 22 O -0.974 6.974 23 O -0.967 6.967 24 C -0.610 4.610 25 C 0.111 3.889 26 H 0.281 0.719 27 H 0.114 0.886 28 H 0.147 0.853 29 H 0.171 0.829 30 H 0.167 0.833 31 H 0.107 0.893 32 H 0.125 0.875 33 H 0.162 0.838 34 H 0.182 0.818 35 H 0.149 0.851 36 H 0.166 0.834 37 H 0.101 0.899 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.875 -12.137 6.042 22.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.152 4.152 3 Si 0.724 3.276 4 H -0.188 1.188 5 H -0.176 1.176 6 H -0.158 1.158 7 C -0.704 4.704 8 H 0.105 0.895 9 S 0.205 5.795 10 C -0.166 4.166 11 C -0.185 4.185 12 C -0.097 4.097 13 C -0.157 4.157 14 C -0.086 4.086 15 C -0.172 4.172 16 C 0.360 3.640 17 O -0.429 6.429 18 N -0.351 5.351 19 C -0.028 4.028 20 C -0.739 4.739 21 S 2.618 3.382 22 O -0.971 6.971 23 O -0.964 6.964 24 C -0.741 4.741 25 C -0.012 4.012 26 H 0.090 0.910 27 H 0.131 0.869 28 H 0.165 0.835 29 H 0.189 0.811 30 H 0.184 0.816 31 H 0.125 0.875 32 H 0.143 0.857 33 H 0.180 0.820 34 H 0.199 0.801 35 H 0.168 0.832 36 H 0.183 0.817 37 H 0.120 0.880 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 19.123 -10.464 6.186 22.660 hybrid contribution -1.947 0.224 -0.882 2.149 sum 17.176 -10.240 5.304 20.688 Atomic orbital electron populations 1.69953 1.07263 1.29373 1.47353 1.25531 0.95304 1.01951 0.92366 0.86075 0.80980 0.80130 0.80394 1.18783 1.17587 1.15842 1.23046 0.90394 0.97823 1.59161 0.89478 1.83232 1.07103 1.02614 1.86553 1.22211 0.95780 0.98000 1.00563 1.21462 0.98505 0.94526 1.04035 1.21528 0.99043 0.93524 0.95573 1.21407 0.91077 1.01350 1.01865 1.21469 1.01307 0.89285 0.96586 1.19404 0.90675 0.95418 1.11687 1.18476 0.81512 0.82534 0.81467 1.90787 1.72103 1.40544 1.39458 1.48050 1.32795 1.32943 1.21289 1.21939 0.98948 0.89648 0.92264 1.30611 1.14174 1.13332 1.15739 1.07425 0.76947 0.77350 0.76500 1.93564 1.47519 1.68815 1.87244 1.93566 1.86858 1.74433 1.41592 1.30509 1.05237 1.17850 1.20456 1.21330 0.82390 0.91223 1.06299 0.90967 0.86855 0.83514 0.81124 0.81601 0.87486 0.85694 0.81957 0.80055 0.83250 0.81665 0.88039 0.87504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.25 13.96 21.64 0.30 -52.94 16 2 C 0.06 3.17 5.50 84.87 0.47 3.63 16 3 Si 0.90 43.00 27.74 68.60 1.90 44.90 16 4 H -0.26 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.25 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.23 -10.98 6.74 99.48 0.67 -10.31 16 7 C -0.56 -31.66 9.62 67.95 0.65 -31.00 16 8 H 0.09 5.19 5.08 -2.91 -0.01 5.17 16 9 S -0.05 -2.40 17.97 -56.49 -1.02 -3.41 16 10 C -0.05 -2.05 6.14 23.04 0.14 -1.91 16 11 C -0.16 -6.21 9.25 22.40 0.21 -6.00 16 12 C -0.08 -2.05 10.02 22.29 0.22 -1.83 16 13 C -0.14 -2.67 10.02 22.27 0.22 -2.44 16 14 C -0.07 -1.43 7.41 22.51 0.17 -1.26 16 15 C -0.16 -5.13 4.82 -19.95 -0.10 -5.23 16 16 C 0.57 18.20 6.47 86.67 0.56 18.76 16 17 O -0.55 -22.07 15.48 -4.09 -0.06 -22.13 16 18 N -0.62 -13.62 2.79 -824.59 -2.30 -15.92 16 19 C 0.09 1.40 5.50 86.62 0.48 1.88 16 20 C -0.61 -4.78 6.38 72.20 0.46 -4.32 16 21 S 2.43 32.91 5.29 -56.49 -0.30 32.61 16 22 O -0.97 -19.62 18.10 -127.38 -2.31 -21.92 16 23 O -0.97 -19.82 18.02 -127.38 -2.30 -22.11 16 24 C -0.61 -7.41 6.55 72.04 0.47 -6.94 16 25 C 0.11 2.08 6.18 86.46 0.53 2.62 16 26 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 27 H 0.11 5.14 4.98 -2.91 -0.01 5.13 16 28 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16 29 H 0.17 1.80 8.06 -2.91 -0.02 1.77 16 30 H 0.17 2.00 6.50 -2.91 -0.02 1.98 16 31 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.13 1.88 4.58 -2.39 -0.01 1.87 16 33 H 0.16 0.57 7.33 -2.39 -0.02 0.55 16 34 H 0.18 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.15 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.17 1.34 8.14 -2.39 -0.02 1.33 16 37 H 0.10 2.33 6.90 -2.38 -0.02 2.32 16 38 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -84.30 334.67 -0.51 -84.81 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 1.08 Total: 10.17 kcal Atomic # 6 Polarization: -38.54 SS G_CDS: 4.49 Total: -34.05 kcal Atomic # 7 Polarization: -66.87 SS G_CDS: -2.00 Total: -68.87 kcal Atomic # 8 Polarization: -61.50 SS G_CDS: -4.67 Total: -66.17 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.90 Total: 44.90 kcal Atomic # 16 Polarization: 30.51 SS G_CDS: -1.31 Total: 29.20 kcal Total: -84.30 -0.51 -84.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729368331.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.797 kcal (2) G-P(sol) polarization free energy of solvation -84.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds