Wall clock time and date at job start Tue Mar 31 2020 23:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.35631 * 126.42264 * 2 1 4 4 H 0.96997 * 124.93628 * 0.02562 * 3 2 1 5 5 N 1.28473 * 110.13651 * 179.78660 * 3 2 1 6 6 C 1.31871 * 110.12336 * 0.39489 * 5 3 2 7 7 C 1.47565 * 126.47094 * 179.88038 * 6 5 3 8 8 O 1.21611 * 120.00645 * 173.71518 * 7 6 5 9 9 N 1.34785 * 120.00298 * 353.71054 * 7 6 5 10 10 C 1.36906 * 120.00202 * 182.30697 * 9 7 6 11 11 H 1.08007 * 120.00110 * 126.60281 * 10 9 7 12 12 C 1.39015 * 120.00076 * 306.60373 * 10 9 7 13 13 N 1.31385 * 119.99757 * 182.07800 * 12 10 9 14 14 Si 1.86794 * 120.00075 * 2.07421 * 12 10 9 15 15 H 1.48501 * 109.47121 * 94.94649 * 14 12 10 16 16 H 1.48508 * 109.47121 * 214.94592 * 14 12 10 17 17 H 1.48501 * 109.47361 * 334.94483 * 14 12 10 18 18 C 1.46495 * 119.99449 * 2.30749 * 9 7 6 19 19 C 1.55240 * 110.58300 * 227.22545 * 18 9 7 20 20 C 1.54891 * 102.58961 * 203.34323 * 19 18 9 21 21 C 1.54262 * 104.31144 * 37.92960 * 20 19 18 22 22 C 1.53874 * 106.60143 * 336.32266 * 21 20 19 23 23 C 1.35425 * 126.42484 * 180.02562 * 2 1 3 24 24 Br 1.89099 * 127.23722 * 359.93529 * 23 2 1 25 25 H 1.09004 * 109.47038 * 269.97242 * 1 2 3 26 26 H 1.09005 * 109.47295 * 29.96886 * 1 2 3 27 27 H 1.08996 * 109.47403 * 149.97335 * 1 2 3 28 28 H 0.97000 * 119.99789 * 180.02562 * 13 12 10 29 29 H 1.09000 * 110.44153 * 349.81386 * 18 9 7 30 30 H 1.08998 * 110.89548 * 85.04892 * 19 18 9 31 31 H 1.08997 * 110.76451 * 321.57057 * 19 18 9 32 32 H 1.09007 * 110.48353 * 279.18831 * 20 19 18 33 33 H 1.09000 * 110.48398 * 156.68015 * 20 19 18 34 34 H 1.08998 * 110.03004 * 95.61439 * 21 20 19 35 35 H 1.09010 * 110.03164 * 216.99097 * 21 20 19 36 36 H 1.09001 * 110.02596 * 119.28432 * 22 21 20 37 37 H 1.09001 * 110.02907 * 240.66482 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3123 1.0914 0.0000 4 1 2.0023 2.0105 0.0004 5 7 3.5455 0.7311 0.0045 6 6 3.6338 -0.5847 -0.0009 7 6 4.8765 -1.3804 -0.0007 8 8 4.8238 -2.5904 0.1093 9 7 6.0701 -0.7663 -0.1226 10 6 7.2199 -1.5079 -0.1700 11 1 7.9172 -1.3718 -0.9835 12 6 7.4900 -2.4361 0.8290 13 7 8.6124 -3.1186 0.8055 14 14 6.2571 -2.7131 2.2047 15 1 5.3830 -3.8636 1.8619 16 1 6.9820 -3.0014 3.4684 17 1 5.4263 -1.4944 2.3777 18 6 6.1369 0.6949 -0.2043 19 6 7.0652 1.1345 -1.3683 20 6 7.4915 2.5607 -0.9400 21 6 7.6702 2.4622 0.5890 22 6 6.8089 1.2760 1.0568 23 6 2.3111 -1.0897 -0.0005 24 35 1.7792 -2.9043 0.0004 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3634 0.8903 -0.5134 27 1 -0.3634 -0.8897 -0.5142 28 1 8.8007 -3.7665 1.5024 29 1 5.1394 1.1150 -0.3329 30 1 6.5198 1.1612 -2.3117 31 1 7.9320 0.4776 -1.4405 32 1 6.7126 3.2821 -1.1874 33 1 8.4317 2.8372 -1.4171 34 1 8.7174 2.2820 0.8317 35 1 7.3299 3.3821 1.0648 36 1 7.4383 0.5201 1.5265 37 1 6.0505 1.6198 1.7603 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737922856.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:20 Heat of formation + Delta-G solvation = 35.752601 kcal Electronic energy + Delta-G solvation = -22877.547711 eV Core-core repulsion = 19509.492086 eV Total energy + Delta-G solvation = -3368.055625 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.83887 -40.83460 -38.59516 -35.57435 -34.35946 -33.93372 -33.27119 -31.00474 -29.50478 -28.69507 -27.91977 -27.27983 -24.35641 -22.05733 -21.63259 -21.48749 -20.72078 -18.92104 -18.76070 -17.72265 -17.36468 -16.83009 -16.30139 -15.85528 -15.51650 -15.24336 -15.02828 -14.78204 -14.34140 -14.15081 -13.82536 -13.79866 -13.44172 -13.24426 -12.75205 -12.47377 -12.38527 -12.33698 -12.21397 -11.95565 -11.85235 -11.76738 -11.32127 -11.18777 -10.95826 -10.80970 -10.37660 -10.29844 -9.79181 -9.42570 -8.40308 -6.30470 0.38656 0.67919 0.74729 1.24385 1.35091 1.51744 1.90686 2.21926 2.57774 2.65536 2.98300 3.41022 3.63448 3.83601 3.91508 3.92170 4.13784 4.31832 4.53563 4.66540 4.69362 4.73199 4.78725 4.83164 4.92982 4.97511 5.04657 5.14782 5.17909 5.27700 5.41473 5.55741 5.59462 5.73114 5.92587 6.04149 6.66724 6.81936 6.85710 7.27105 7.79457 8.64873 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.013084 B = 0.006639 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.495316 B = 4216.501578 C = 5797.685353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.084 3.916 3 N -0.360 5.360 4 H 0.469 0.531 5 N -0.257 5.257 6 C 0.011 3.989 7 C 0.519 3.481 8 O -0.562 6.562 9 N -0.453 5.453 10 C -0.316 4.316 11 H 0.075 0.925 12 C 0.041 3.959 13 N -0.912 5.912 14 Si 0.986 3.014 15 H -0.284 1.284 16 H -0.319 1.319 17 H -0.289 1.289 18 C 0.090 3.910 19 C -0.129 4.129 20 C -0.107 4.107 21 C -0.111 4.111 22 C -0.130 4.130 23 C -0.200 4.200 24 Br -0.003 7.003 25 H 0.104 0.896 26 H 0.115 0.885 27 H 0.090 0.910 28 H 0.273 0.727 29 H 0.150 0.850 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.035 0.965 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.275 14.631 -1.742 24.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.046 4.046 3 N -0.077 5.077 4 H 0.320 0.680 5 N -0.092 5.092 6 C -0.151 4.151 7 C 0.309 3.691 8 O -0.446 6.446 9 N -0.172 5.172 10 C -0.444 4.444 11 H 0.093 0.907 12 C -0.162 4.162 13 N -0.550 5.550 14 Si 0.821 3.179 15 H -0.212 1.212 16 H -0.250 1.250 17 H -0.215 1.215 18 C -0.014 4.014 19 C -0.167 4.167 20 C -0.144 4.144 21 C -0.148 4.148 22 C -0.168 4.168 23 C -0.290 4.290 24 Br 0.080 6.920 25 H 0.122 0.878 26 H 0.133 0.867 27 H 0.109 0.891 28 H 0.083 0.917 29 H 0.166 0.834 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.054 0.946 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.674 14.221 -1.631 23.529 hybrid contribution -0.131 -0.919 0.696 1.160 sum -18.805 13.302 -0.936 23.053 Atomic orbital electron populations 1.20720 0.81912 1.06331 1.05638 1.21837 0.96958 0.84569 1.01265 1.43664 1.01924 1.10371 1.51698 0.67990 1.73209 1.02230 1.12628 1.21127 1.21899 0.94413 0.90293 1.08492 1.17897 0.83001 0.86939 0.81278 1.90451 1.85793 1.14485 1.53907 1.43769 1.03521 1.06561 1.63375 1.18576 0.97657 1.19594 1.08578 0.90713 1.25998 0.96125 0.95149 0.98958 1.69731 1.24706 1.25192 1.35337 0.84984 0.77979 0.78913 0.75976 1.21217 1.25034 1.21527 1.23420 1.03253 0.79257 0.95423 1.22780 0.99094 0.97635 0.97212 1.22234 1.02053 0.95124 0.95022 1.22014 0.99090 0.97242 0.96495 1.22367 0.98881 0.97886 0.97696 1.21863 0.93649 0.93624 1.19895 1.96571 1.89238 1.08174 1.97985 0.87802 0.86659 0.89139 0.91745 0.83358 0.91762 0.93196 0.89407 0.90708 0.92684 0.89499 0.94631 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 10.28 71.24 0.73 -0.20 16 2 C 0.08 1.84 7.25 41.32 0.30 2.14 16 3 N -0.36 -7.23 6.86 -47.57 -0.33 -7.55 16 4 H 0.47 4.24 8.96 -219.99 -1.97 2.26 16 5 N -0.26 -8.11 8.52 -48.20 -0.41 -8.52 16 6 C 0.01 0.43 6.87 42.42 0.29 0.73 16 7 C 0.52 26.85 5.43 86.70 0.47 27.32 16 8 O -0.56 -32.69 11.00 -4.07 -0.04 -32.73 16 9 N -0.45 -23.27 2.16 -610.46 -1.32 -24.59 16 10 C -0.32 -18.81 8.13 84.09 0.68 -18.13 16 11 H 0.08 4.73 6.79 -2.91 -0.02 4.71 16 12 C 0.04 2.57 5.32 84.95 0.45 3.02 16 13 N -0.91 -58.58 13.96 21.68 0.30 -58.28 16 14 Si 0.99 56.81 24.24 68.60 1.66 58.47 16 15 H -0.28 -17.27 6.68 99.48 0.66 -16.61 16 16 H -0.32 -17.76 7.11 99.48 0.71 -17.05 16 17 H -0.29 -16.29 6.40 99.48 0.64 -15.66 16 18 C 0.09 3.65 3.04 46.19 0.14 3.79 16 19 C -0.13 -4.68 6.37 32.01 0.20 -4.48 16 20 C -0.11 -2.86 6.82 31.67 0.22 -2.64 16 21 C -0.11 -3.22 6.80 31.32 0.21 -3.00 16 22 C -0.13 -4.97 6.44 31.32 0.20 -4.76 16 23 C -0.20 -6.80 6.67 22.44 0.15 -6.65 16 24 Br 0.00 -0.11 32.30 -20.37 -0.66 -0.77 16 25 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.11 0.38 8.14 -2.38 -0.02 0.36 16 27 H 0.09 1.07 7.90 -2.39 -0.02 1.05 16 28 H 0.27 16.62 8.31 -92.71 -0.77 15.85 16 29 H 0.15 5.39 3.83 -84.22 -0.32 5.07 16 30 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.05 2.15 6.25 -2.39 -0.01 2.14 16 32 H 0.09 1.86 8.14 -2.38 -0.02 1.85 16 33 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.03 1.65 7.44 -2.39 -0.02 1.63 16 37 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -82.76 313.24 1.98 -80.78 By element: Atomic # 1 Polarization: -2.67 SS G_CDS: -1.28 Total: -3.95 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 4.05 Total: -2.86 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -1.76 Total: -98.94 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -0.04 Total: -32.73 kcal Atomic # 14 Polarization: 56.81 SS G_CDS: 1.66 Total: 58.47 kcal Atomic # 35 Polarization: -0.11 SS G_CDS: -0.66 Total: -0.77 kcal Total: -82.76 1.98 -80.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737922856.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.534 kcal (2) G-P(sol) polarization free energy of solvation -82.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds