Wall clock time and date at job start Tue Mar 31 2020 23:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50701 * 119.99881 * 2 1 4 4 N 1.46495 * 109.47239 * 124.99256 * 3 2 1 5 5 C 1.46503 * 120.00424 * 269.99926 * 4 3 2 6 6 C 1.50692 * 109.46999 * 270.00385 * 5 4 3 7 7 H 1.07998 * 120.00363 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99838 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00185 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00272 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47067 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47106 * 119.99636 * 10 8 6 13 13 H 1.48503 * 109.47245 * 239.99906 * 10 8 6 14 14 C 1.34777 * 119.99602 * 90.00164 * 4 3 2 15 15 O 1.21619 * 119.99804 * 179.97438 * 14 4 3 16 16 C 1.47327 * 120.00206 * 359.97438 * 14 4 3 17 17 C 1.41329 * 126.43076 * 89.71449 * 16 14 4 18 18 C 1.50705 * 125.97604 * 0.22828 * 17 16 14 19 19 N 1.30419 * 108.04428 * 180.26382 * 17 16 14 20 20 N 1.39924 * 108.94713 * 359.97438 * 19 17 16 21 21 C 1.46505 * 125.75163 * 180.02562 * 20 19 17 22 22 C 1.34332 * 108.49786 * 0.02562 * 20 19 17 23 23 Br 1.89099 * 126.31635 * 179.97438 * 22 20 19 24 24 H 1.07992 * 119.99958 * 0.02562 * 1 2 3 25 25 H 1.07995 * 119.99492 * 180.02562 * 1 2 3 26 26 H 1.07992 * 119.99958 * 179.97438 * 2 1 3 27 27 H 1.09005 * 109.46605 * 4.99549 * 3 2 1 28 28 H 1.08993 * 109.47182 * 244.99701 * 3 2 1 29 29 H 1.09003 * 109.46798 * 30.00414 * 5 4 3 30 30 H 1.09000 * 109.47272 * 149.99815 * 5 4 3 31 31 H 0.97003 * 120.00113 * 180.02562 * 9 8 6 32 32 H 1.08998 * 109.47036 * 89.99717 * 18 17 16 33 33 H 1.08996 * 109.47037 * 209.99837 * 18 17 16 34 34 H 1.09000 * 109.46683 * 329.99823 * 18 17 16 35 35 H 1.09000 * 109.46747 * 269.97523 * 21 20 19 36 36 H 1.08997 * 109.46950 * 29.98134 * 21 20 19 37 37 H 1.08999 * 109.46851 * 149.97769 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5587 1.8652 2.4249 6 6 2.8440 3.3438 2.4803 7 1 3.3037 3.8371 1.6367 8 6 2.5190 4.0668 3.6084 9 7 1.9596 3.4660 4.6360 10 14 2.8733 5.8996 3.6775 11 1 3.5021 6.3306 2.4030 12 1 1.6031 6.6420 3.8792 13 1 3.7969 6.1831 4.8053 14 6 4.2496 0.8663 0.9825 15 8 5.0220 0.8891 1.9217 16 6 4.6869 0.3297 -0.3180 17 6 5.2786 1.0621 -1.3720 18 6 5.5805 2.5386 -1.3637 19 7 5.5168 0.2368 -2.3534 20 7 5.0965 -1.0449 -1.9814 21 6 5.1921 -2.2506 -2.8080 22 6 4.5905 -0.9835 -0.7385 23 35 3.8773 -2.4272 0.2529 24 1 -0.5400 0.9352 -0.0004 25 1 -0.5399 -0.9353 0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6214 1.4026 -0.9313 29 1 1.4886 1.6968 2.5459 30 1 3.0987 1.3606 3.2261 31 1 1.7307 3.9748 5.4295 32 1 6.5847 2.7019 -0.9727 33 1 5.5185 2.9278 -2.3799 34 1 4.8565 3.0538 -0.7325 35 1 4.2841 -2.3572 -3.4015 36 1 6.0527 -2.1686 -3.4719 37 1 5.3107 -3.1231 -2.1655 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816802952.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:39 Heat of formation + Delta-G solvation = 71.775426 kcal Electronic energy + Delta-G solvation = -22209.203370 eV Core-core repulsion = 18842.709812 eV Total energy + Delta-G solvation = -3366.493558 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.44148 -38.62378 -35.55170 -34.25915 -33.17300 -32.16718 -31.96086 -29.87088 -29.34861 -27.51581 -25.97558 -25.24453 -23.24338 -21.29372 -20.25774 -19.70181 -18.58263 -17.06941 -16.47667 -16.15002 -15.67646 -15.36292 -14.65357 -14.36286 -14.23248 -13.93384 -13.53109 -13.33151 -12.93049 -12.66738 -12.49390 -12.43918 -12.16034 -12.00815 -11.65185 -11.48825 -11.21340 -11.16765 -10.86894 -10.69486 -10.59419 -10.40079 -10.16772 -9.58981 -9.24052 -9.13554 -9.08617 -8.49052 -8.37987 -7.65140 -6.00703 -4.05169 0.91173 1.39241 2.32953 2.41894 2.54876 3.28768 3.32540 3.40498 3.44221 4.02354 4.34516 4.48831 4.78021 4.86388 5.06465 5.12438 5.21255 5.31219 5.34798 5.51275 5.52247 5.74669 5.75784 5.87391 5.96705 6.08248 6.26668 6.40304 6.55278 6.87456 6.98661 7.14044 7.44636 7.49139 7.58533 7.95832 8.26673 8.42021 8.92479 9.10127 9.59674 11.07458 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.015674 B = 0.004714 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.016977 B = 5938.534620 C = 6628.430445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.171 4.171 3 C 0.139 3.861 4 N -0.579 5.579 5 C 0.247 3.753 6 C -0.524 4.524 7 H 0.059 0.941 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.896 3.104 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.581 3.419 15 O -0.525 6.525 16 C -0.213 4.213 17 C 0.113 3.887 18 C -0.079 4.079 19 N -0.276 5.276 20 N -0.350 5.350 21 C 0.094 3.906 22 C 0.093 3.907 23 Br 0.034 6.966 24 H 0.098 0.902 25 H 0.093 0.907 26 H 0.107 0.893 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.262 0.738 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.811 -13.107 -15.893 20.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.191 4.191 3 C 0.015 3.985 4 N -0.310 5.310 5 C 0.128 3.872 6 C -0.563 4.563 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.724 3.276 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.209 1.209 14 C 0.365 3.635 15 O -0.401 6.401 16 C -0.231 4.231 17 C -0.054 4.054 18 C -0.137 4.137 19 N -0.099 5.099 20 N -0.132 5.132 21 C -0.047 4.047 22 C -0.115 4.115 23 Br 0.116 6.884 24 H 0.117 0.883 25 H 0.111 0.889 26 H 0.125 0.875 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.116 0.884 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.364 -13.831 -16.084 21.344 hybrid contribution -0.098 1.078 0.627 1.250 sum 2.266 -12.753 -15.457 20.167 Atomic orbital electron populations 1.23775 0.95737 1.01606 1.01121 1.23655 0.96526 0.99512 0.99377 1.20530 0.92875 0.95284 0.89775 1.48145 1.09842 1.59364 1.13611 1.19332 0.95553 0.93820 0.78472 1.21458 1.40381 0.93196 1.01252 0.92277 1.24921 0.95101 0.98663 0.95346 1.69948 1.42158 1.36023 1.05171 0.86470 0.77873 0.85077 0.78157 1.19723 1.21056 1.20929 1.17079 0.82555 0.78420 0.85419 1.90780 1.52812 1.56012 1.40542 1.20423 1.12275 0.91297 0.99068 1.22407 0.96233 0.97161 0.89594 1.20332 1.03761 0.86010 1.03625 1.77135 1.22911 0.87263 1.22637 1.48210 1.46513 1.08281 1.10189 1.22028 1.04589 0.82682 0.95408 1.23052 1.04561 0.94852 0.89018 1.96805 1.82484 1.39161 1.69911 0.88336 0.88914 0.87541 0.89366 0.91130 0.94733 0.93719 0.92821 0.89678 0.90324 0.89304 0.89924 0.88447 0.89178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 14.32 29.01 0.42 -2.14 16 2 C -0.17 -2.68 9.85 -36.03 -0.35 -3.03 16 3 C 0.14 2.45 5.67 -5.20 -0.03 2.42 16 4 N -0.58 -12.58 2.44 -177.75 -0.43 -13.01 16 5 C 0.25 6.46 5.16 -5.20 -0.03 6.43 16 6 C -0.52 -14.61 9.39 -34.44 -0.32 -14.94 16 7 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 10 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.58 12.78 6.99 -12.56 -0.09 12.69 16 15 O -0.53 -13.80 16.69 5.26 0.09 -13.71 16 16 C -0.21 -3.86 4.11 -105.03 -0.43 -4.29 16 17 C 0.11 1.83 6.94 -82.02 -0.57 1.26 16 18 C -0.08 -1.11 10.28 36.01 0.37 -0.74 16 19 N -0.28 -4.16 12.49 33.90 0.42 -3.73 16 20 N -0.35 -4.68 3.98 -65.77 -0.26 -4.94 16 21 C 0.09 0.76 11.24 59.85 0.67 1.44 16 22 C 0.09 1.44 7.30 -16.46 -0.12 1.32 16 23 Br 0.03 0.45 30.89 -68.01 -2.10 -1.65 16 24 H 0.10 1.32 7.84 -52.49 -0.41 0.91 16 25 H 0.09 1.10 8.06 -52.49 -0.42 0.68 16 26 H 0.11 1.63 5.48 -52.49 -0.29 1.34 16 27 H 0.09 1.55 7.72 -51.93 -0.40 1.15 16 28 H 0.07 1.15 6.63 -51.93 -0.34 0.81 16 29 H 0.03 0.92 8.07 -51.93 -0.42 0.50 16 30 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 1.38 8.00 -51.93 -0.42 0.96 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.60 7.63 -51.93 -0.40 0.21 16 LS Contribution 342.88 15.07 5.17 5.17 Total: -1.00 -33.78 342.88 -6.70 -40.48 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -4.72 Total: -1.60 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -0.58 Total: 2.06 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.46 Total: -47.36 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.09 Total: -13.71 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 35 Polarization: 0.45 SS G_CDS: -2.10 Total: -1.65 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.78 -6.70 -40.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816802952.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.258 kcal (2) G-P(sol) polarization free energy of solvation -33.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds