Wall clock time and date at job start Tue Mar 31 2020 23:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50701 * 119.99881 * 2 1 4 4 N 1.46495 * 109.47239 * 124.99256 * 3 2 1 5 5 C 1.46503 * 120.00424 * 269.99926 * 4 3 2 6 6 C 1.50692 * 109.46999 * 270.00385 * 5 4 3 7 7 H 1.07998 * 120.00363 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99838 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00185 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00272 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47067 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47106 * 119.99636 * 10 8 6 13 13 H 1.48503 * 109.47245 * 239.99906 * 10 8 6 14 14 C 1.34777 * 119.99602 * 90.00164 * 4 3 2 15 15 O 1.21619 * 119.99804 * 179.97438 * 14 4 3 16 16 C 1.47327 * 120.00206 * 359.97438 * 14 4 3 17 17 C 1.41329 * 126.43076 * 89.71449 * 16 14 4 18 18 C 1.50705 * 125.97604 * 0.22828 * 17 16 14 19 19 N 1.30419 * 108.04428 * 180.26382 * 17 16 14 20 20 N 1.39924 * 108.94713 * 359.97438 * 19 17 16 21 21 C 1.46505 * 125.75163 * 180.02562 * 20 19 17 22 22 C 1.34332 * 108.49786 * 0.02562 * 20 19 17 23 23 Br 1.89099 * 126.31635 * 179.97438 * 22 20 19 24 24 H 1.07992 * 119.99958 * 0.02562 * 1 2 3 25 25 H 1.07995 * 119.99492 * 180.02562 * 1 2 3 26 26 H 1.07992 * 119.99958 * 179.97438 * 2 1 3 27 27 H 1.09005 * 109.46605 * 4.99549 * 3 2 1 28 28 H 1.08993 * 109.47182 * 244.99701 * 3 2 1 29 29 H 1.09003 * 109.46798 * 30.00414 * 5 4 3 30 30 H 1.09000 * 109.47272 * 149.99815 * 5 4 3 31 31 H 0.97003 * 120.00113 * 180.02562 * 9 8 6 32 32 H 1.08998 * 109.47036 * 89.99717 * 18 17 16 33 33 H 1.08996 * 109.47037 * 209.99837 * 18 17 16 34 34 H 1.09000 * 109.46683 * 329.99823 * 18 17 16 35 35 H 1.09000 * 109.46747 * 269.97523 * 21 20 19 36 36 H 1.08997 * 109.46950 * 29.98134 * 21 20 19 37 37 H 1.08999 * 109.46851 * 149.97769 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5587 1.8652 2.4249 6 6 2.8440 3.3438 2.4803 7 1 3.3037 3.8371 1.6367 8 6 2.5190 4.0668 3.6084 9 7 1.9596 3.4660 4.6360 10 14 2.8733 5.8996 3.6775 11 1 3.5021 6.3306 2.4030 12 1 1.6031 6.6420 3.8792 13 1 3.7969 6.1831 4.8053 14 6 4.2496 0.8663 0.9825 15 8 5.0220 0.8891 1.9217 16 6 4.6869 0.3297 -0.3180 17 6 5.2786 1.0621 -1.3720 18 6 5.5805 2.5386 -1.3637 19 7 5.5168 0.2368 -2.3534 20 7 5.0965 -1.0449 -1.9814 21 6 5.1921 -2.2506 -2.8080 22 6 4.5905 -0.9835 -0.7385 23 35 3.8773 -2.4272 0.2529 24 1 -0.5400 0.9352 -0.0004 25 1 -0.5399 -0.9353 0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6214 1.4026 -0.9313 29 1 1.4886 1.6968 2.5459 30 1 3.0987 1.3606 3.2261 31 1 1.7307 3.9748 5.4295 32 1 6.5847 2.7019 -0.9727 33 1 5.5185 2.9278 -2.3799 34 1 4.8565 3.0538 -0.7325 35 1 4.2841 -2.3572 -3.4015 36 1 6.0527 -2.1686 -3.4719 37 1 5.3107 -3.1231 -2.1655 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816802952.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:39 Heat of formation + Delta-G solvation = 50.250371 kcal Electronic energy + Delta-G solvation = -22210.136766 eV Core-core repulsion = 18842.709812 eV Total energy + Delta-G solvation = -3367.426955 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.65143 -40.31327 -37.19756 -35.35654 -35.06761 -33.66299 -33.32089 -31.06396 -30.54282 -29.32561 -27.17089 -26.71163 -25.05261 -22.75808 -21.49800 -20.91984 -20.03878 -18.64086 -18.37608 -17.62050 -17.00042 -16.77579 -16.16246 -16.10377 -15.63802 -15.24196 -14.57686 -14.47074 -14.39220 -14.12956 -14.04444 -13.51024 -13.46540 -13.27285 -13.20944 -13.01400 -12.86609 -12.62280 -12.55959 -12.33270 -12.18796 -11.93156 -11.66432 -11.50697 -10.86268 -10.60140 -10.37279 -10.32083 -9.72418 -9.48417 -8.17384 -6.31204 -0.26454 0.19953 1.13607 1.32312 1.36571 1.40828 1.43343 1.54794 1.65526 2.37467 2.52290 3.12996 3.22438 3.69232 3.83908 4.05433 4.19827 4.23247 4.23690 4.30857 4.41161 4.56882 4.65458 4.73810 4.80439 4.84010 5.04271 5.05239 5.25795 5.28161 5.50263 5.54904 5.69603 5.78529 5.95046 6.10399 6.26421 6.67486 6.77836 7.28263 7.44196 8.90426 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.015674 B = 0.004714 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.016977 B = 5938.534620 C = 6628.430445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.195 4.195 3 C 0.141 3.859 4 N -0.580 5.580 5 C 0.265 3.735 6 C -0.538 4.538 7 H 0.057 0.943 8 C 0.010 3.990 9 N -0.928 5.928 10 Si 0.966 3.034 11 H -0.263 1.263 12 H -0.271 1.271 13 H -0.284 1.284 14 C 0.586 3.414 15 O -0.582 6.582 16 C -0.249 4.249 17 C 0.105 3.895 18 C -0.077 4.077 19 N -0.275 5.275 20 N -0.334 5.334 21 C 0.078 3.922 22 C 0.100 3.900 23 Br 0.052 6.948 24 H 0.102 0.898 25 H 0.118 0.882 26 H 0.110 0.890 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.025 0.975 30 H 0.000 1.000 31 H 0.266 0.734 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.068 0.932 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.429 -13.529 -18.249 22.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.215 4.215 3 C 0.018 3.982 4 N -0.309 5.309 5 C 0.144 3.856 6 C -0.577 4.577 7 H 0.076 0.924 8 C -0.189 4.189 9 N -0.568 5.568 10 Si 0.790 3.210 11 H -0.187 1.187 12 H -0.196 1.196 13 H -0.210 1.210 14 C 0.372 3.628 15 O -0.463 6.463 16 C -0.267 4.267 17 C -0.061 4.061 18 C -0.136 4.136 19 N -0.099 5.099 20 N -0.115 5.115 21 C -0.060 4.060 22 C -0.111 4.111 23 Br 0.134 6.866 24 H 0.121 0.879 25 H 0.137 0.863 26 H 0.128 0.872 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.043 0.957 30 H 0.018 0.982 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.125 0.875 34 H 0.087 0.913 35 H 0.125 0.875 36 H 0.135 0.865 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.962 -14.274 -18.518 23.462 hybrid contribution -0.039 1.052 1.311 1.681 sum 1.923 -13.222 -17.206 21.785 Atomic orbital electron populations 1.24043 0.95112 1.03059 0.97842 1.23523 0.97156 0.98465 1.02322 1.20667 0.92317 0.96566 0.88614 1.48090 1.10831 1.58798 1.13188 1.18792 0.94112 0.92991 0.79720 1.21708 1.40428 0.94057 1.01480 0.92436 1.25815 0.94677 1.03575 0.94824 1.70066 1.42952 1.37989 1.05796 0.85396 0.78109 0.79197 0.78296 1.18739 1.19643 1.20956 1.17525 0.81740 0.77240 0.86258 1.90730 1.54249 1.58338 1.42945 1.20041 1.15570 0.93014 0.98051 1.22596 0.96205 0.98042 0.89208 1.20359 1.03218 0.85067 1.04935 1.77107 1.22953 0.87798 1.22080 1.48654 1.44182 1.09040 1.09665 1.22571 1.06771 0.80998 0.95688 1.23115 1.03735 0.94500 0.89734 1.96819 1.82195 1.37680 1.69889 0.87938 0.86344 0.87175 0.89777 0.89864 0.95662 0.98164 0.92499 0.89346 0.87501 0.91344 0.87493 0.86479 0.87567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.17 14.32 67.77 0.97 -3.20 16 2 C -0.20 -5.92 9.85 25.64 0.25 -5.67 16 3 C 0.14 4.97 5.67 85.63 0.49 5.46 16 4 N -0.58 -26.09 2.44 -834.52 -2.04 -28.12 16 5 C 0.26 14.50 5.16 85.63 0.44 14.95 16 6 C -0.54 -30.92 9.39 25.60 0.24 -30.68 16 7 H 0.06 3.25 7.81 -2.91 -0.02 3.22 16 8 C 0.01 0.57 5.46 84.65 0.46 1.04 16 9 N -0.93 -56.11 13.29 21.45 0.28 -55.82 16 10 Si 0.97 44.70 29.54 68.60 2.03 46.73 16 11 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 13 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 14 C 0.59 26.72 6.99 86.63 0.61 27.32 16 15 O -0.58 -32.29 16.69 -4.09 -0.07 -32.36 16 16 C -0.25 -9.04 4.11 -20.13 -0.08 -9.12 16 17 C 0.11 3.35 6.94 43.53 0.30 3.66 16 18 C -0.08 -2.15 10.28 71.24 0.73 -1.42 16 19 N -0.27 -7.76 12.49 -46.66 -0.58 -8.35 16 20 N -0.33 -8.17 3.98 -361.99 -1.44 -9.61 16 21 C 0.08 1.00 11.24 127.77 1.44 2.44 16 22 C 0.10 2.96 7.30 84.31 0.62 3.58 16 23 Br 0.05 1.33 30.89 -20.37 -0.63 0.70 16 24 H 0.10 2.55 7.84 -2.91 -0.02 2.53 16 25 H 0.12 2.44 8.06 -2.91 -0.02 2.42 16 26 H 0.11 3.24 5.48 -2.91 -0.02 3.23 16 27 H 0.08 2.98 7.72 -2.38 -0.02 2.97 16 28 H 0.08 2.70 6.63 -2.39 -0.02 2.69 16 29 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 30 H 0.00 0.02 7.42 -2.39 -0.02 0.00 16 31 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 32 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.07 2.17 8.00 -2.39 -0.02 2.15 16 35 H 0.11 0.94 8.14 -2.39 -0.02 0.93 16 36 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.11 1.06 7.63 -2.39 -0.02 1.05 16 Total: -1.00 -75.64 342.88 5.09 -70.55 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 1.08 Total: 7.95 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 6.46 Total: 8.33 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -3.78 Total: -101.90 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.07 Total: -32.36 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 35 Polarization: 1.33 SS G_CDS: -0.63 Total: 0.70 kcal Total: -75.64 5.09 -70.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816802952.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.798 kcal (2) G-P(sol) polarization free energy of solvation -75.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds