Wall clock time and date at job start Tue Mar 31 2020 23:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28465 * 124.88438 * 2 1 4 4 C 1.31803 * 110.09804 * 179.97438 * 3 2 1 5 5 C 1.47712 * 126.50948 * 180.02562 * 4 3 2 6 6 O 1.21571 * 119.99908 * 175.18602 * 5 4 3 7 7 N 1.34776 * 120.00179 * 355.18202 * 5 4 3 8 8 C 1.46504 * 120.00035 * 5.54968 * 7 5 4 9 9 C 1.50699 * 109.47428 * 275.41830 * 8 7 5 10 10 H 1.08002 * 120.00059 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00150 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00171 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 119.99772 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.46803 * 90.00252 * 13 11 9 15 15 H 1.48500 * 109.47021 * 209.99866 * 13 11 9 16 16 H 1.48501 * 109.47187 * 329.99918 * 13 11 9 17 17 C 1.46499 * 120.00159 * 185.55759 * 7 5 4 18 18 C 1.53001 * 109.46795 * 265.02490 * 17 7 5 19 19 C 1.53004 * 117.49847 * 243.74560 * 18 17 7 20 20 C 1.53003 * 117.50046 * 175.09106 * 18 17 7 21 21 C 1.41492 * 106.97781 * 0.25913 * 4 3 2 22 22 C 1.35063 * 124.88354 * 179.97438 * 2 1 3 23 23 Br 1.89096 * 126.39807 * 0.02562 * 22 2 1 24 24 H 1.08999 * 109.47113 * 90.02105 * 1 2 3 25 25 H 1.08997 * 109.46898 * 210.02623 * 1 2 3 26 26 H 1.09000 * 109.46552 * 330.02708 * 1 2 3 27 27 H 1.09007 * 109.46453 * 35.41767 * 8 7 5 28 28 H 1.08993 * 109.47060 * 155.41387 * 8 7 5 29 29 H 0.97003 * 120.00136 * 179.97438 * 12 11 9 30 30 H 1.08994 * 109.47458 * 145.02430 * 17 7 5 31 31 H 1.08998 * 109.47313 * 25.02162 * 17 7 5 32 32 H 1.09002 * 115.55112 * 29.41265 * 18 17 7 33 33 H 1.09001 * 117.49644 * 0.02562 * 19 18 17 34 34 H 1.08999 * 117.49992 * 145.01688 * 19 18 17 35 35 H 1.09002 * 117.49608 * 214.97817 * 20 18 17 36 36 H 1.08999 * 117.49627 * 359.97438 * 20 18 17 37 37 H 1.08007 * 127.25793 * 179.73507 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.1998 1.0538 0.0000 4 6 3.4742 0.7174 0.0006 5 6 4.6269 1.6411 0.0013 6 8 5.7572 1.2024 0.0901 7 7 4.4256 2.9701 -0.0966 8 6 3.0628 3.5077 -0.0812 9 6 2.4861 3.4548 -1.4725 10 1 3.0759 3.0606 -2.2869 11 6 1.2057 3.9096 -1.7058 12 7 0.7026 3.8639 -2.9200 13 14 0.1854 4.5908 -0.2970 14 1 0.4170 6.0530 -0.1800 15 1 -1.2539 4.3371 -0.5604 16 1 0.5820 3.9238 0.9691 17 6 5.5695 3.8772 -0.2186 18 6 5.9513 4.4054 1.1657 19 6 5.8115 5.9092 1.4113 20 6 7.2006 5.2828 1.2672 21 6 3.5283 -0.6965 -0.0052 22 6 2.2375 -1.1079 0.0005 23 35 1.6307 -2.8989 0.0006 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3633 -0.8897 0.5142 26 1 -0.3632 0.8903 0.5134 27 1 2.4450 2.9122 0.5911 28 1 3.0839 4.5412 0.2643 29 1 -0.1984 4.1836 -3.0841 30 1 5.3031 4.7129 -0.8656 31 1 6.4150 3.3401 -0.6484 32 1 5.7364 3.7372 1.9996 33 1 5.4471 6.5220 0.5868 34 1 5.5050 6.2302 2.4068 35 1 7.8076 5.1919 2.1680 36 1 7.7508 5.4833 0.3478 37 1 4.4123 -1.3170 -0.0104 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825700264.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:49 Heat of formation + Delta-G solvation = 92.088978 kcal Electronic energy + Delta-G solvation = -22213.984054 eV Core-core repulsion = 18848.371358 eV Total energy + Delta-G solvation = -3365.612697 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.28699 -39.01409 -36.96014 -34.77249 -33.18154 -32.35206 -32.15579 -29.21713 -28.45259 -27.52871 -25.91847 -22.93075 -22.15210 -21.94064 -20.83829 -20.37407 -18.53246 -16.96404 -16.80520 -16.02697 -16.01288 -15.86231 -14.74693 -14.50000 -14.07751 -13.79560 -13.46912 -13.29910 -12.83335 -12.57822 -12.54345 -12.32383 -12.12377 -11.92802 -11.43028 -11.29277 -11.17164 -10.94252 -10.82761 -10.57303 -10.32625 -10.15592 -9.86726 -9.65149 -9.47820 -9.34900 -8.78118 -8.69871 -8.54153 -7.72966 -6.10068 -4.05859 1.27299 2.02578 2.29309 2.79319 3.19575 3.28495 3.32127 3.74264 4.02416 4.14247 4.35983 4.62505 5.02582 5.13740 5.19982 5.23261 5.27272 5.30224 5.46379 5.58074 5.66018 5.76950 5.81301 5.88680 6.09121 6.10913 6.18227 6.31774 6.49865 6.58267 6.63089 6.73677 7.05011 7.44804 7.58971 8.12017 8.26640 8.50207 8.89120 8.96000 9.51269 11.03329 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.011893 B = 0.004822 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.848963 B = 5805.841685 C = 7612.911806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.269 5.269 3 N -0.168 5.168 4 C -0.012 4.012 5 C 0.605 3.395 6 O -0.560 6.560 7 N -0.576 5.576 8 C 0.203 3.797 9 C -0.508 4.508 10 H 0.072 0.928 11 C 0.079 3.921 12 N -0.900 5.900 13 Si 0.864 3.136 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.261 1.261 17 C 0.150 3.850 18 C -0.159 4.159 19 C -0.181 4.181 20 C -0.178 4.178 21 C -0.137 4.137 22 C -0.019 4.019 23 Br 0.008 6.992 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.058 0.942 28 H 0.027 0.973 29 H 0.262 0.738 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.557 -8.892 8.426 12.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.060 5.060 3 N -0.005 5.005 4 C -0.171 4.171 5 C 0.392 3.608 6 O -0.439 6.439 7 N -0.304 5.304 8 C 0.082 3.918 9 C -0.547 4.547 10 H 0.090 0.910 11 C -0.123 4.123 12 N -0.539 5.539 13 Si 0.691 3.309 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.186 1.186 17 C 0.027 3.973 18 C -0.178 4.178 19 C -0.218 4.218 20 C -0.215 4.215 21 C -0.168 4.168 22 C -0.220 4.220 23 Br 0.090 6.910 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.118 0.882 27 H 0.075 0.925 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.113 -8.786 8.361 12.129 hybrid contribution -0.352 0.174 0.463 0.607 sum -0.464 -8.612 8.825 12.339 Atomic orbital electron populations 1.22223 0.73284 1.05050 1.05253 1.45767 1.07980 1.01787 1.50427 1.74487 1.02897 1.09434 1.13663 1.21780 0.91379 0.92913 1.11034 1.16807 0.86017 0.81612 0.76410 1.90702 1.22887 1.77369 1.52963 1.47754 1.08809 1.04650 1.69231 1.20127 0.77998 0.94434 0.99247 1.21215 0.99563 1.41128 0.92766 0.90989 1.24717 0.97164 0.95385 0.95001 1.69909 1.16328 1.47694 1.19998 0.87044 0.79920 0.79995 0.83973 1.20271 1.21252 1.18600 1.20940 0.89118 0.93478 0.93811 1.22777 1.01763 0.93213 1.00044 1.23057 0.99914 0.96097 1.02780 1.22898 0.90846 1.04881 1.02915 1.21507 0.95112 0.94014 1.06169 1.22984 0.93069 0.87613 1.18306 1.96670 1.89342 1.06756 1.98227 0.88959 0.89012 0.88162 0.92466 0.95537 0.92818 0.90013 0.89943 0.87976 0.88528 0.89297 0.89186 0.88793 0.81724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.11 11.11 59.85 0.66 1.78 16 2 N -0.27 -4.74 3.70 -66.32 -0.25 -4.99 16 3 N -0.17 -3.54 7.64 33.42 0.26 -3.29 16 4 C -0.01 -0.25 6.74 -82.77 -0.56 -0.81 16 5 C 0.60 13.35 7.62 -12.39 -0.09 13.26 16 6 O -0.56 -12.82 16.49 5.30 0.09 -12.73 16 7 N -0.58 -12.33 2.47 -176.22 -0.44 -12.77 16 8 C 0.20 4.68 3.84 -5.19 -0.02 4.66 16 9 C -0.51 -13.53 8.60 -34.44 -0.30 -13.83 16 10 H 0.07 2.19 8.06 -52.49 -0.42 1.76 16 11 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 12 N -0.90 -26.17 13.96 55.43 0.77 -25.40 16 13 Si 0.86 19.99 27.47 -169.99 -4.67 15.32 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 17 C 0.15 2.75 5.68 -4.04 -0.02 2.72 16 18 C -0.16 -2.51 6.01 -90.62 -0.54 -3.05 16 19 C -0.18 -2.48 10.18 -26.69 -0.27 -2.75 16 20 C -0.18 -2.28 10.25 -26.70 -0.27 -2.56 16 21 C -0.14 -2.48 10.78 -39.33 -0.42 -2.90 16 22 C -0.02 -0.30 7.33 -17.11 -0.13 -0.43 16 23 Br 0.01 0.10 33.27 -68.01 -2.26 -2.16 16 24 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.09 0.92 7.56 -51.93 -0.39 0.53 16 26 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.06 1.35 4.71 -51.93 -0.24 1.10 16 28 H 0.03 0.60 7.46 -51.93 -0.39 0.21 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.08 1.48 7.84 -51.93 -0.41 1.07 16 31 H 0.08 1.52 7.36 -51.93 -0.38 1.14 16 32 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 33 H 0.10 1.32 8.03 -51.93 -0.42 0.90 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.17 2.66 8.06 -52.48 -0.42 2.24 16 LS Contribution 335.61 15.07 5.06 5.06 Total: -1.00 -31.30 335.61 -8.28 -39.58 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -4.78 Total: 3.24 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -2.06 Total: -1.87 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: 0.35 Total: -46.44 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.09 Total: -12.73 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.67 Total: 15.32 kcal Atomic # 35 Polarization: 0.10 SS G_CDS: -2.26 Total: -2.16 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.30 -8.28 -39.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825700264.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.669 kcal (2) G-P(sol) polarization free energy of solvation -31.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds