Wall clock time and date at job start Tue Mar 31 2020 23:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28465 * 124.88438 * 2 1 4 4 C 1.31803 * 110.09804 * 179.97438 * 3 2 1 5 5 C 1.47712 * 126.50948 * 180.02562 * 4 3 2 6 6 O 1.21571 * 119.99908 * 175.18602 * 5 4 3 7 7 N 1.34776 * 120.00179 * 355.18202 * 5 4 3 8 8 C 1.46504 * 120.00035 * 5.54968 * 7 5 4 9 9 C 1.50699 * 109.47428 * 275.41830 * 8 7 5 10 10 H 1.08002 * 120.00059 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00150 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00171 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 119.99772 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.46803 * 90.00252 * 13 11 9 15 15 H 1.48500 * 109.47021 * 209.99866 * 13 11 9 16 16 H 1.48501 * 109.47187 * 329.99918 * 13 11 9 17 17 C 1.46499 * 120.00159 * 185.55759 * 7 5 4 18 18 C 1.53001 * 109.46795 * 265.02490 * 17 7 5 19 19 C 1.53004 * 117.49847 * 243.74560 * 18 17 7 20 20 C 1.53003 * 117.50046 * 175.09106 * 18 17 7 21 21 C 1.41492 * 106.97781 * 0.25913 * 4 3 2 22 22 C 1.35063 * 124.88354 * 179.97438 * 2 1 3 23 23 Br 1.89096 * 126.39807 * 0.02562 * 22 2 1 24 24 H 1.08999 * 109.47113 * 90.02105 * 1 2 3 25 25 H 1.08997 * 109.46898 * 210.02623 * 1 2 3 26 26 H 1.09000 * 109.46552 * 330.02708 * 1 2 3 27 27 H 1.09007 * 109.46453 * 35.41767 * 8 7 5 28 28 H 1.08993 * 109.47060 * 155.41387 * 8 7 5 29 29 H 0.97003 * 120.00136 * 179.97438 * 12 11 9 30 30 H 1.08994 * 109.47458 * 145.02430 * 17 7 5 31 31 H 1.08998 * 109.47313 * 25.02162 * 17 7 5 32 32 H 1.09002 * 115.55112 * 29.41265 * 18 17 7 33 33 H 1.09001 * 117.49644 * 0.02562 * 19 18 17 34 34 H 1.08999 * 117.49992 * 145.01688 * 19 18 17 35 35 H 1.09002 * 117.49608 * 214.97817 * 20 18 17 36 36 H 1.08999 * 117.49627 * 359.97438 * 20 18 17 37 37 H 1.08007 * 127.25793 * 179.73507 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.1998 1.0538 0.0000 4 6 3.4742 0.7174 0.0006 5 6 4.6269 1.6411 0.0013 6 8 5.7572 1.2024 0.0901 7 7 4.4256 2.9701 -0.0966 8 6 3.0628 3.5077 -0.0812 9 6 2.4861 3.4548 -1.4725 10 1 3.0759 3.0606 -2.2869 11 6 1.2057 3.9096 -1.7058 12 7 0.7026 3.8639 -2.9200 13 14 0.1854 4.5908 -0.2970 14 1 0.4170 6.0530 -0.1800 15 1 -1.2539 4.3371 -0.5604 16 1 0.5820 3.9238 0.9691 17 6 5.5695 3.8772 -0.2186 18 6 5.9513 4.4054 1.1657 19 6 5.8115 5.9092 1.4113 20 6 7.2006 5.2828 1.2672 21 6 3.5283 -0.6965 -0.0052 22 6 2.2375 -1.1079 0.0005 23 35 1.6307 -2.8989 0.0006 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3633 -0.8897 0.5142 26 1 -0.3632 0.8903 0.5134 27 1 2.4450 2.9122 0.5911 28 1 3.0839 4.5412 0.2643 29 1 -0.1984 4.1836 -3.0841 30 1 5.3031 4.7129 -0.8656 31 1 6.4150 3.3401 -0.6484 32 1 5.7364 3.7372 1.9996 33 1 5.4471 6.5220 0.5868 34 1 5.5050 6.2302 2.4068 35 1 7.8076 5.1919 2.1680 36 1 7.7508 5.4833 0.3478 37 1 4.4123 -1.3170 -0.0104 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825700264.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:49 Heat of formation + Delta-G solvation = 73.589400 kcal Electronic energy + Delta-G solvation = -22214.786256 eV Core-core repulsion = 18848.371358 eV Total energy + Delta-G solvation = -3366.414899 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.70372 -40.64381 -38.25950 -36.47332 -34.52338 -34.36959 -33.42120 -30.62806 -30.11961 -29.07255 -27.33030 -24.72345 -23.56766 -23.18117 -22.23144 -21.68714 -20.08334 -19.00627 -18.29070 -17.61521 -17.41343 -17.29884 -16.34524 -15.93726 -15.76229 -15.08677 -14.92372 -14.82362 -14.43092 -14.14429 -13.85707 -13.77254 -13.55981 -13.48193 -12.97385 -12.63989 -12.50424 -12.34849 -12.31439 -12.03933 -11.85350 -11.68707 -11.38463 -11.35079 -11.01569 -10.79241 -10.66784 -10.20198 -9.98801 -9.44959 -8.20212 -6.21464 0.01942 0.57256 0.81275 1.37570 1.40038 1.51402 1.53618 2.19942 2.40140 2.41201 2.96233 3.15668 3.29006 3.74981 3.87153 4.03306 4.11876 4.19721 4.23378 4.29132 4.38299 4.48061 4.54475 4.70060 4.77381 4.78787 4.82671 5.01244 5.04636 5.19697 5.28027 5.29961 5.53409 5.56033 5.78251 6.22601 6.52720 6.72605 6.83905 7.21713 7.40629 8.96920 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.011893 B = 0.004822 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.848963 B = 5805.841685 C = 7612.911806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.267 5.267 3 N -0.202 5.202 4 C -0.042 4.042 5 C 0.597 3.403 6 O -0.578 6.578 7 N -0.581 5.581 8 C 0.217 3.783 9 C -0.501 4.501 10 H 0.019 0.981 11 C 0.030 3.970 12 N -0.948 5.948 13 Si 0.928 3.072 14 H -0.271 1.271 15 H -0.279 1.279 16 H -0.243 1.243 17 C 0.148 3.852 18 C -0.182 4.182 19 C -0.174 4.174 20 C -0.156 4.156 21 C -0.150 4.150 22 C -0.010 4.010 23 Br 0.056 6.944 24 H 0.093 0.907 25 H 0.129 0.871 26 H 0.103 0.897 27 H 0.061 0.939 28 H 0.037 0.963 29 H 0.264 0.736 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.254 -9.144 10.450 13.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.059 5.059 3 N -0.040 5.040 4 C -0.200 4.200 5 C 0.385 3.615 6 O -0.458 6.458 7 N -0.309 5.309 8 C 0.095 3.905 9 C -0.540 4.540 10 H 0.037 0.963 11 C -0.167 4.167 12 N -0.589 5.589 13 Si 0.752 3.248 14 H -0.196 1.196 15 H -0.205 1.205 16 H -0.166 1.166 17 C 0.025 3.975 18 C -0.201 4.201 19 C -0.211 4.211 20 C -0.194 4.194 21 C -0.181 4.181 22 C -0.212 4.212 23 Br 0.138 6.862 24 H 0.111 0.889 25 H 0.147 0.853 26 H 0.121 0.879 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -0.907 -9.027 10.395 13.798 hybrid contribution -0.102 0.095 -0.258 0.294 sum -1.009 -8.932 10.137 13.548 Atomic orbital electron populations 1.22608 0.71134 1.07133 1.05980 1.46112 1.09217 1.01529 1.49006 1.74324 1.03181 1.11367 1.15127 1.21847 0.91317 0.94119 1.12702 1.17098 0.86379 0.81960 0.76103 1.90661 1.23560 1.77633 1.53947 1.47821 1.08995 1.05051 1.69044 1.19871 0.78790 0.94908 0.96910 1.21181 0.99346 1.40453 0.93052 0.96279 1.25470 0.98186 0.95537 0.97515 1.70063 1.16955 1.49319 1.22552 0.86010 0.78260 0.79445 0.81119 1.19616 1.20492 1.16636 1.21045 0.87895 0.92768 0.95746 1.22555 1.05351 0.94438 0.97757 1.23139 1.00412 0.93916 1.03583 1.23022 0.90297 1.01852 1.04199 1.21716 0.96574 0.92981 1.06796 1.23326 0.92514 0.89460 1.15879 1.96719 1.88746 1.02700 1.98049 0.88855 0.85264 0.87876 0.92160 0.94518 0.92680 0.90348 0.90754 0.89129 0.88615 0.87759 0.87271 0.87895 0.80518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.77 11.11 127.77 1.42 3.18 16 2 N -0.27 -9.20 3.70 -363.74 -1.35 -10.54 16 3 N -0.20 -8.57 7.64 -48.18 -0.37 -8.93 16 4 C -0.04 -1.80 6.74 42.46 0.29 -1.51 16 5 C 0.60 27.24 7.62 86.75 0.66 27.90 16 6 O -0.58 -27.26 16.49 -3.94 -0.06 -27.33 16 7 N -0.58 -25.59 2.47 -829.72 -2.05 -27.64 16 8 C 0.22 10.09 3.84 85.63 0.33 10.42 16 9 C -0.50 -27.55 8.60 25.60 0.22 -27.33 16 10 H 0.02 1.22 8.06 -2.91 -0.02 1.20 16 11 C 0.03 1.67 5.47 84.65 0.46 2.13 16 12 N -0.95 -56.39 13.96 21.44 0.30 -56.09 16 13 Si 0.93 40.72 27.47 68.60 1.88 42.60 16 14 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 15 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 16 H -0.24 -9.87 6.54 99.48 0.65 -9.21 16 17 C 0.15 5.55 5.68 86.38 0.49 6.04 16 18 C -0.18 -5.64 6.01 -10.79 -0.06 -5.70 16 19 C -0.17 -4.41 10.18 30.62 0.31 -4.10 16 20 C -0.16 -3.69 10.25 30.62 0.31 -3.38 16 21 C -0.15 -5.41 10.78 22.43 0.24 -5.17 16 22 C -0.01 -0.31 7.33 83.56 0.61 0.30 16 23 Br 0.06 1.23 33.27 -20.37 -0.68 0.55 16 24 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.13 2.20 7.56 -2.39 -0.02 2.18 16 26 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 27 H 0.06 2.82 4.71 -2.38 -0.01 2.81 16 28 H 0.04 1.63 7.46 -2.39 -0.02 1.61 16 29 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 30 H 0.08 2.92 7.84 -2.39 -0.02 2.90 16 31 H 0.07 2.85 7.36 -2.39 -0.02 2.83 16 32 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 33 H 0.10 2.45 8.03 -2.39 -0.02 2.43 16 34 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.10 2.25 8.14 -2.39 -0.02 2.24 16 37 H 0.18 5.70 8.06 -2.91 -0.02 5.68 16 Total: -1.00 -69.72 335.61 3.99 -65.72 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 1.03 Total: 18.87 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 5.29 Total: 2.79 kcal Atomic # 7 Polarization: -99.74 SS G_CDS: -3.46 Total: -103.21 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.06 Total: -27.33 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.88 Total: 42.60 kcal Atomic # 35 Polarization: 1.23 SS G_CDS: -0.68 Total: 0.55 kcal Total: -69.72 3.99 -65.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825700264.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.314 kcal (2) G-P(sol) polarization free energy of solvation -69.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds