Wall clock time and date at job start Tue Mar 31 2020 23:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99925 * 2 1 4 4 H 1.48499 * 109.47411 * 240.00384 * 3 2 1 5 5 H 1.48492 * 109.47357 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46787 * 120.00454 * 3 2 1 7 7 C 1.37875 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00383 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99863 * 359.97438 * 7 2 1 10 10 S 1.81401 * 109.47115 * 180.02562 * 9 7 2 11 11 O 1.42092 * 110.54305 * 68.37342 * 10 9 7 12 12 O 1.42099 * 110.54200 * 291.62129 * 10 9 7 13 13 N 1.65598 * 104.44864 * 179.97438 * 10 9 7 14 14 C 1.34776 * 120.00491 * 64.99762 * 13 10 9 15 15 O 1.21281 * 119.99608 * 359.97438 * 14 13 10 16 16 C 1.50696 * 120.00522 * 180.02562 * 14 13 10 17 17 H 1.09004 * 109.30550 * 29.60229 * 16 14 13 18 18 S 1.81329 * 109.30800 * 270.00084 * 16 14 13 19 19 C 1.82060 * 100.85898 * 193.78991 * 18 16 14 20 20 C 1.52147 * 107.73303 * 64.00439 * 19 18 16 21 21 C 1.50229 * 113.56098 * 306.97051 * 20 19 18 22 22 C 1.39941 * 114.46862 * 200.22276 * 21 20 19 23 23 C 1.37453 * 121.51776 * 181.78814 * 22 21 20 24 24 C 1.38284 * 119.50992 * 359.91991 * 23 22 21 25 25 C 1.37576 * 119.26763 * 359.59313 * 24 23 22 26 26 C 1.36939 * 126.71758 * 21.25897 * 21 20 19 27 27 H 0.97006 * 120.00055 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46992 * 59.99768 * 9 7 2 29 29 H 1.09005 * 109.46730 * 299.99901 * 9 7 2 30 30 H 0.97005 * 119.99719 * 244.99950 * 13 10 9 31 31 H 1.09007 * 109.81084 * 183.56621 * 19 18 16 32 32 H 1.09004 * 109.80944 * 304.44839 * 19 18 16 33 33 H 1.09003 * 108.66874 * 185.91628 * 20 19 18 34 34 H 1.09000 * 108.66729 * 68.02680 * 20 19 18 35 35 H 1.08008 * 119.24124 * 1.75667 * 22 21 20 36 36 H 1.08009 * 120.24798 * 179.97438 * 23 22 21 37 37 H 1.08009 * 120.37228 * 179.57303 * 24 23 22 38 38 H 1.08005 * 119.33200 * 180.13803 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 16 2.4298 -3.8780 -0.0005 11 8 3.1266 -3.9383 1.2364 12 8 3.1265 -3.9383 -1.2375 13 7 1.4794 -5.2341 0.0002 14 6 0.6883 -5.5032 -1.0572 15 8 0.6721 -4.7519 -2.0092 16 6 -0.1770 -6.7370 -1.0563 17 1 -0.4512 -6.9841 -0.0307 18 16 0.7484 -8.1188 -1.7791 19 6 -0.5911 -9.3198 -2.0585 20 6 -1.5453 -8.7202 -3.0806 21 6 -2.0301 -7.3459 -2.7157 22 6 -3.2079 -6.9559 -3.3630 23 6 -3.7596 -5.7128 -3.1636 24 6 -3.1419 -4.8234 -2.3035 25 6 -1.9892 -5.2042 -1.6562 26 6 -1.4298 -6.4683 -1.8526 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 1.4921 -5.8348 0.7617 31 1 -0.1771 -10.2523 -2.4422 32 1 -1.1205 -9.5067 -1.1242 33 1 -2.4079 -9.3790 -3.1812 34 1 -1.0368 -8.6666 -4.0432 35 1 -3.6944 -7.6474 -4.0351 36 1 -4.6693 -5.4330 -3.6742 37 1 -3.5596 -3.8406 -2.1418 38 1 -1.5072 -4.5112 -0.9825 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835411820.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:10 Heat of formation + Delta-G solvation = -83.969948 kcal Electronic energy + Delta-G solvation = -25372.526324 eV Core-core repulsion = 21626.210651 eV Total energy + Delta-G solvation = -3746.315672 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.059 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.55648 -39.11034 -36.29104 -35.21434 -34.69454 -34.23627 -33.38625 -32.87804 -29.91793 -29.10445 -28.05109 -24.40022 -23.58025 -22.93159 -21.46632 -20.71363 -19.30398 -17.91990 -17.28381 -16.91236 -16.71866 -16.39791 -15.75715 -15.51144 -15.39121 -14.99022 -14.79341 -14.53907 -14.31408 -13.97588 -13.67330 -13.35155 -13.18971 -12.82215 -12.56118 -12.36360 -12.21560 -11.95291 -11.74673 -11.50350 -11.38074 -11.32157 -11.23394 -11.11319 -10.90439 -10.68698 -10.54826 -10.27736 -10.09450 -9.86635 -9.21938 -8.84427 -8.74592 -8.72566 -7.98229 -6.36003 -4.47196 0.88226 0.99938 1.25684 1.29454 2.01402 2.56848 3.03748 3.23496 3.25621 3.30565 3.62407 4.07292 4.15923 4.26319 4.37130 4.47948 4.56121 4.74177 4.80075 4.92845 4.95590 5.05700 5.12741 5.13483 5.17745 5.31217 5.42748 5.52950 5.56054 5.83826 5.94210 6.33231 6.37152 6.48911 6.51384 6.68472 6.85669 6.91138 7.38434 7.58167 7.70572 8.53190 9.20392 10.75704 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.014957 B = 0.003988 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.608480 B = 7019.138901 C = 8527.787204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.079 3.921 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.536 4.536 8 H 0.070 0.930 9 C -0.403 4.403 10 S 2.549 3.451 11 O -0.965 6.965 12 O -0.948 6.948 13 N -1.055 6.055 14 C 0.554 3.446 15 O -0.458 6.458 16 C -0.046 4.046 17 H 0.126 0.874 18 S -0.198 6.198 19 C -0.087 4.087 20 C -0.081 4.081 21 C -0.068 4.068 22 C -0.127 4.127 23 C -0.109 4.109 24 C -0.114 4.114 25 C -0.089 4.089 26 C -0.072 4.072 27 H 0.270 0.730 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.427 0.573 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.695 -18.553 -2.543 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.128 4.128 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.576 4.576 8 H 0.089 0.911 9 C -0.540 4.540 10 S 2.652 3.348 11 O -0.956 6.956 12 O -0.938 6.938 13 N -0.814 5.814 14 C 0.336 3.664 15 O -0.327 6.327 16 C -0.179 4.179 17 H 0.144 0.856 18 S 0.030 5.970 19 C -0.235 4.235 20 C -0.119 4.119 21 C -0.068 4.068 22 C -0.145 4.145 23 C -0.127 4.127 24 C -0.132 4.132 25 C -0.108 4.108 26 C -0.074 4.074 27 H 0.079 0.921 28 H 0.116 0.884 29 H 0.104 0.896 30 H 0.261 0.739 31 H 0.135 0.865 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.763 -18.085 -3.494 19.988 hybrid contribution -1.483 0.829 0.757 1.860 sum -9.246 -17.255 -2.737 19.767 Atomic orbital electron populations 1.69936 1.06250 1.27894 1.47166 1.24899 0.95047 0.99540 0.93280 0.86400 0.79650 0.81226 0.79529 1.19317 1.20636 1.19363 1.20237 0.92749 0.88389 1.56177 0.91146 1.27608 1.09860 1.09144 1.07355 1.07310 0.77378 0.75903 0.74218 1.93526 1.70974 1.85855 1.45220 1.93545 1.70635 1.85048 1.44571 1.55535 1.55781 1.43941 1.26187 1.19340 0.79058 0.86124 0.81873 1.90960 1.62263 1.47531 1.31912 1.22278 0.95673 0.96363 1.03557 0.85615 1.87417 1.14388 1.11882 1.83328 1.23397 0.97555 0.99623 1.02925 1.20430 0.99278 0.92682 0.99498 1.19265 0.95618 0.95528 0.96432 1.21235 0.95774 0.97154 1.00337 1.21054 0.99842 0.93805 0.98044 1.21099 0.95511 0.99865 0.96745 1.21385 0.95418 0.94691 0.99333 1.18765 0.94430 0.95302 0.98859 0.92077 0.88381 0.89626 0.73920 0.86531 0.89028 0.89587 0.89138 0.86080 0.85768 0.85224 0.85774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.65 13.29 55.43 0.74 -23.91 16 2 C 0.08 2.19 5.46 -17.82 -0.10 2.09 16 3 Si 0.91 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -14.96 9.13 -34.44 -0.31 -15.27 16 8 H 0.07 1.92 7.71 -52.49 -0.40 1.52 16 9 C -0.40 -9.91 5.64 36.01 0.20 -9.71 16 10 S 2.55 55.97 5.03 -107.50 -0.54 55.43 16 11 O -0.96 -22.21 18.08 -57.54 -1.04 -23.25 16 12 O -0.95 -24.08 17.04 -64.78 -1.10 -25.18 16 13 N -1.05 -17.41 5.60 31.22 0.17 -17.24 16 14 C 0.55 9.53 5.40 -10.99 -0.06 9.47 16 15 O -0.46 -9.73 13.36 -11.55 -0.15 -9.88 16 16 C -0.05 -0.60 3.00 -28.96 -0.09 -0.69 16 17 H 0.13 1.23 8.14 -51.92 -0.42 0.80 16 18 S -0.20 -2.43 21.67 -107.50 -2.33 -4.76 16 19 C -0.09 -0.67 6.57 36.72 0.24 -0.43 16 20 C -0.08 -0.66 5.29 -28.55 -0.15 -0.81 16 21 C -0.07 -0.76 5.74 -104.68 -0.60 -1.37 16 22 C -0.13 -1.30 9.39 -39.23 -0.37 -1.67 16 23 C -0.11 -1.19 10.05 -39.85 -0.40 -1.59 16 24 C -0.11 -1.48 10.06 -39.81 -0.40 -1.88 16 25 C -0.09 -1.30 8.17 -39.30 -0.32 -1.62 16 26 C -0.07 -0.96 5.22 -104.49 -0.54 -1.51 16 27 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.10 2.51 7.19 -51.93 -0.37 2.13 16 29 H 0.09 2.00 8.14 -51.92 -0.42 1.58 16 30 H 0.43 5.12 8.79 -34.47 -0.30 4.82 16 31 H 0.12 0.66 8.14 -51.92 -0.42 0.24 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.48 7.96 -51.93 -0.41 0.07 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.12 0.91 7.94 -52.48 -0.42 0.49 16 36 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 38 H 0.12 1.94 6.77 -52.48 -0.36 1.58 16 LS Contribution 345.55 15.07 5.21 5.21 Total: -1.00 -36.33 345.55 -11.33 -47.67 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -4.36 Total: 4.87 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: -2.90 Total: -24.97 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.91 Total: -41.15 kcal Atomic # 8 Polarization: -56.01 SS G_CDS: -2.30 Total: -58.31 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 53.54 SS G_CDS: -2.87 Total: 50.67 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.33 -11.33 -47.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835411820.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.304 kcal (2) G-P(sol) polarization free energy of solvation -36.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds