Wall clock time and date at job start Tue Mar 31 2020 23:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99749 * 2 1 4 4 H 1.48511 * 109.47148 * 269.99935 * 3 2 1 5 5 H 1.48498 * 109.47375 * 29.99989 * 3 2 1 6 6 H 1.48501 * 109.47297 * 150.00390 * 3 2 1 7 7 C 1.37872 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 359.97438 * 7 2 1 10 10 S 1.81400 * 109.47095 * 180.02562 * 9 7 2 11 11 O 1.42107 * 110.54243 * 68.37785 * 10 9 7 12 12 O 1.42100 * 110.54499 * 291.62625 * 10 9 7 13 13 N 1.65596 * 104.45067 * 179.97438 * 10 9 7 14 14 C 1.34778 * 119.99904 * 64.99893 * 13 10 9 15 15 O 1.21280 * 120.00137 * 0.02562 * 14 13 10 16 16 C 1.50699 * 120.00025 * 179.97438 * 14 13 10 17 17 H 1.09005 * 109.15627 * 334.52160 * 16 14 13 18 18 S 1.81332 * 109.31128 * 94.03754 * 16 14 13 19 19 C 1.82073 * 100.84782 * 166.29850 * 18 16 14 20 20 C 1.52146 * 107.74670 * 296.00754 * 19 18 16 21 21 C 1.50225 * 113.58555 * 52.93359 * 20 19 18 22 22 C 1.39956 * 114.47891 * 158.97899 * 21 20 19 23 23 C 1.37448 * 121.51962 * 179.18757 * 22 21 20 24 24 C 1.38292 * 119.51669 * 359.88546 * 23 22 21 25 25 C 1.37580 * 119.25993 * 0.41870 * 24 23 22 26 26 C 1.36929 * 126.72965 * 338.82400 * 21 20 19 27 27 H 0.97003 * 119.99735 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47410 * 60.00367 * 9 7 2 29 29 H 1.09001 * 109.46983 * 299.99818 * 9 7 2 30 30 H 0.97003 * 120.00076 * 245.00147 * 13 10 9 31 31 H 1.09004 * 109.80098 * 176.44694 * 19 18 16 32 32 H 1.08997 * 109.80060 * 55.57087 * 19 18 16 33 33 H 1.09004 * 108.65255 * 173.99311 * 20 19 18 34 34 H 1.08997 * 108.66242 * 292.00161 * 20 19 18 35 35 H 1.07995 * 119.23947 * 359.19374 * 22 21 20 36 36 H 1.08000 * 120.24520 * 179.90775 * 23 22 21 37 37 H 1.07998 * 120.37163 * 180.39738 * 24 23 22 38 38 H 1.07996 * 119.33215 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 16 2.4299 -3.8779 -0.0005 11 8 3.1267 -3.9382 1.2365 12 8 3.1267 -3.9382 -1.2375 13 7 1.4796 -5.2340 0.0002 14 6 0.6886 -5.5031 -1.0573 15 8 0.6731 -4.7523 -2.0096 16 6 -0.1758 -6.7376 -1.0569 17 1 0.2700 -7.4862 -0.4019 18 16 -1.8285 -6.3122 -0.4440 19 6 -2.7662 -7.7957 -0.9290 20 6 -2.7604 -7.8717 -2.4485 21 6 -1.3851 -7.7996 -3.0487 22 6 -1.2907 -8.3167 -4.3458 23 6 -0.1032 -8.3083 -5.0380 24 6 1.0272 -7.7759 -4.4453 25 6 0.9427 -7.2718 -3.1680 26 6 -0.2601 -7.2882 -2.4591 27 1 -0.4850 0.8401 0.0004 28 1 0.6242 -2.5567 -0.8903 29 1 0.6248 -2.5570 0.8897 30 1 1.4923 -5.8347 0.7617 31 1 -3.7915 -7.7192 -0.5669 32 1 -2.2921 -8.6845 -0.5128 33 1 -3.2248 -8.8099 -2.7524 34 1 -3.3541 -7.0463 -2.8413 35 1 -2.1711 -8.7317 -4.8137 36 1 -0.0533 -8.7141 -6.0376 37 1 1.9659 -7.7564 -4.9790 38 1 1.8246 -6.8554 -2.7042 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835411822.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:13 Heat of formation + Delta-G solvation = -83.663389 kcal Electronic energy + Delta-G solvation = -25265.957946 eV Core-core repulsion = 21519.655567 eV Total energy + Delta-G solvation = -3746.302379 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.059 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.56361 -39.14984 -36.29198 -35.22627 -34.71810 -34.23764 -33.34249 -32.91337 -29.95777 -29.05678 -28.08595 -24.41202 -23.55878 -22.96893 -21.47363 -20.75765 -19.30975 -17.91437 -17.29084 -16.91713 -16.77981 -16.32840 -15.77823 -15.59900 -15.34208 -14.89747 -14.80641 -14.65598 -14.24532 -14.01539 -13.66539 -13.38712 -13.22279 -12.84743 -12.54389 -12.36172 -12.17944 -11.95545 -11.77492 -11.46533 -11.42209 -11.33924 -11.24807 -11.14769 -10.90091 -10.67508 -10.54200 -10.25301 -10.07092 -9.81274 -9.19148 -8.90158 -8.80782 -8.69152 -7.92959 -6.30902 -4.42946 0.84026 1.08383 1.20566 1.22405 2.04483 2.54579 3.05409 3.23778 3.28930 3.34089 3.55893 4.06632 4.16276 4.27773 4.36721 4.47571 4.54766 4.72670 4.79139 4.89411 4.95344 4.99686 5.11825 5.14963 5.17240 5.27646 5.38873 5.47052 5.56232 5.77707 5.88195 6.28145 6.29393 6.39817 6.56336 6.75286 6.80640 6.91339 7.41920 7.58654 7.75319 8.57951 9.24454 10.80641 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.015539 B = 0.003589 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.498537 B = 7798.657529 C = 8154.007234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.078 3.922 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.537 4.537 8 H 0.071 0.929 9 C -0.401 4.401 10 S 2.549 3.451 11 O -0.965 6.965 12 O -0.951 6.951 13 N -1.055 6.055 14 C 0.554 3.446 15 O -0.458 6.458 16 C -0.048 4.048 17 H 0.124 0.876 18 S -0.188 6.188 19 C -0.089 4.089 20 C -0.082 4.082 21 C -0.065 4.065 22 C -0.125 4.125 23 C -0.110 4.110 24 C -0.117 4.117 25 C -0.093 4.093 26 C -0.069 4.069 27 H 0.269 0.731 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.426 0.574 31 H 0.118 0.882 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.910 -20.671 -3.993 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.129 4.129 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.576 4.576 8 H 0.089 0.911 9 C -0.538 4.538 10 S 2.652 3.348 11 O -0.956 6.956 12 O -0.941 6.941 13 N -0.815 5.815 14 C 0.336 3.664 15 O -0.326 6.326 16 C -0.182 4.182 17 H 0.142 0.858 18 S 0.040 5.960 19 C -0.237 4.237 20 C -0.120 4.120 21 C -0.066 4.066 22 C -0.144 4.144 23 C -0.128 4.128 24 C -0.135 4.135 25 C -0.112 4.112 26 C -0.071 4.071 27 H 0.079 0.921 28 H 0.117 0.883 29 H 0.105 0.895 30 H 0.261 0.739 31 H 0.136 0.864 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.500 -19.140 -4.151 20.636 hybrid contribution 0.222 -0.370 -0.137 0.452 sum -6.278 -19.510 -4.288 20.939 Atomic orbital electron populations 1.69969 1.06241 1.27768 1.47020 1.24919 0.95035 0.99543 0.93365 0.86343 0.79952 0.81658 0.78824 1.19818 1.20548 1.19054 1.20271 0.92707 0.88415 1.56243 0.91133 1.27581 1.09716 1.08893 1.07596 1.07319 0.77347 0.75976 0.74165 1.93527 1.71096 1.85839 1.45154 1.93528 1.70798 1.85166 1.44649 1.55538 1.55722 1.44124 1.26092 1.19344 0.78830 0.86367 0.81881 1.90961 1.62553 1.46989 1.32127 1.22297 0.98033 0.99096 0.98728 0.85812 1.87600 1.03833 1.28356 1.76243 1.23404 1.03574 0.98217 0.98505 1.20447 0.94009 1.03938 0.93608 1.19306 0.93649 0.98524 0.95082 1.21260 0.98196 1.00934 0.93960 1.21038 0.92944 0.99138 0.99713 1.21045 0.99006 0.98509 0.94983 1.21366 0.97055 0.97428 0.95360 1.18778 0.94063 1.00808 0.93427 0.92110 0.88283 0.89510 0.73939 0.86424 0.89093 0.89555 0.88972 0.85973 0.85757 0.85474 0.85937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.38 13.29 55.43 0.74 -24.64 16 2 C 0.08 2.21 5.46 -17.82 -0.10 2.11 16 3 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 7 C -0.54 -15.26 9.13 -34.44 -0.31 -15.57 16 8 H 0.07 1.95 7.71 -52.49 -0.40 1.54 16 9 C -0.40 -10.20 5.64 36.01 0.20 -10.00 16 10 S 2.55 56.01 5.03 -107.50 -0.54 55.47 16 11 O -0.97 -22.23 18.08 -57.54 -1.04 -23.27 16 12 O -0.95 -23.56 17.04 -64.79 -1.10 -24.66 16 13 N -1.06 -17.41 5.60 31.22 0.17 -17.23 16 14 C 0.55 9.55 5.26 -10.99 -0.06 9.49 16 15 O -0.46 -9.77 13.69 -11.56 -0.16 -9.93 16 16 C -0.05 -0.64 2.99 -28.95 -0.09 -0.72 16 17 H 0.12 1.20 8.11 -51.92 -0.42 0.78 16 18 S -0.19 -2.39 21.67 -107.50 -2.33 -4.72 16 19 C -0.09 -0.71 6.57 36.72 0.24 -0.47 16 20 C -0.08 -0.67 5.30 -28.55 -0.15 -0.82 16 21 C -0.07 -0.72 5.74 -104.68 -0.60 -1.32 16 22 C -0.13 -1.24 9.39 -39.23 -0.37 -1.60 16 23 C -0.11 -1.11 10.04 -39.85 -0.40 -1.51 16 24 C -0.12 -1.39 10.07 -39.80 -0.40 -1.79 16 25 C -0.09 -1.29 8.30 -39.30 -0.33 -1.61 16 26 C -0.07 -0.91 5.20 -104.50 -0.54 -1.45 16 27 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.10 2.66 7.19 -51.93 -0.37 2.28 16 29 H 0.09 2.14 8.14 -51.92 -0.42 1.72 16 30 H 0.43 5.09 8.76 -34.47 -0.30 4.79 16 31 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.49 7.95 -51.93 -0.41 0.07 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.12 0.87 7.93 -52.49 -0.42 0.46 16 36 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 37 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.12 1.82 6.85 -52.49 -0.36 1.46 16 LS Contribution 345.85 15.07 5.21 5.21 Total: -1.00 -36.76 345.85 -11.33 -48.09 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -4.36 Total: 4.61 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: -2.90 Total: -25.28 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.91 Total: -41.87 kcal Atomic # 8 Polarization: -55.56 SS G_CDS: -2.30 Total: -57.86 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 53.62 SS G_CDS: -2.87 Total: 50.75 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.76 -11.33 -48.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835411822.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.572 kcal (2) G-P(sol) polarization free energy of solvation -36.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds