Wall clock time and date at job start Tue Mar 31 2020 23:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00159 * 2 1 4 4 C 1.50695 * 109.47613 * 89.99302 * 3 2 1 5 5 H 1.08006 * 119.99977 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00036 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00341 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99894 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47300 * 89.99636 * 8 6 4 10 10 H 1.48499 * 109.47199 * 210.00355 * 8 6 4 11 11 H 1.48506 * 109.47087 * 329.99948 * 8 6 4 12 12 C 1.34779 * 120.00227 * 179.71451 * 2 1 3 13 13 O 1.21697 * 120.00414 * 185.39715 * 12 2 1 14 14 C 1.46648 * 119.99807 * 5.40521 * 12 2 1 15 15 C 1.36973 * 126.92735 * 268.36708 * 14 12 2 16 16 Br 1.89092 * 126.09784 * 359.97438 * 15 14 12 17 17 N 1.33519 * 107.80351 * 179.81986 * 15 14 12 18 18 C 1.30554 * 109.70711 * 0.43200 * 17 15 14 19 19 N 1.34872 * 109.02703 * 359.75075 * 18 17 15 20 20 C 1.46447 * 125.00044 * 179.97438 * 19 18 17 21 21 C 1.53256 * 108.82434 * 342.98036 * 20 19 18 22 22 C 1.53164 * 109.44824 * 50.19024 * 21 20 19 23 23 C 1.51124 * 127.06048 * 179.78879 * 18 17 15 24 24 H 1.09000 * 109.46891 * 85.49511 * 1 2 3 25 25 H 1.09001 * 109.47008 * 205.48833 * 1 2 3 26 26 H 1.08991 * 109.47061 * 325.49336 * 1 2 3 27 27 H 1.08999 * 109.47238 * 209.99979 * 3 2 1 28 28 H 1.09003 * 109.46567 * 329.99301 * 3 2 1 29 29 H 0.96998 * 120.00589 * 180.02562 * 7 6 4 30 30 H 1.08991 * 109.57496 * 102.76339 * 20 19 18 31 31 H 1.08998 * 109.58034 * 223.15954 * 20 19 18 32 32 H 1.09003 * 109.46877 * 290.20222 * 21 20 19 33 33 H 1.08995 * 109.47588 * 170.18690 * 21 20 19 34 34 H 1.09004 * 109.50838 * 170.74258 * 22 21 20 35 35 H 1.08999 * 109.51016 * 50.59885 * 22 21 20 36 36 H 1.08994 * 109.71059 * 283.58972 * 23 18 17 37 37 H 1.09006 * 109.70703 * 44.17756 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7039 1.4207 5 1 2.0980 1.0960 2.2417 6 6 3.1259 2.8781 1.6726 7 7 3.5525 3.6186 0.6730 8 14 3.4378 3.4172 3.4337 9 1 4.7332 2.8606 3.8998 10 1 3.4849 4.9001 3.4965 11 1 2.3430 2.9194 4.3050 12 6 2.1389 -1.1672 0.0058 13 8 3.3519 -1.1691 0.1050 14 6 1.4106 -2.4350 -0.1075 15 6 0.9396 -3.2081 0.9203 16 35 1.1114 -2.8332 2.7657 17 7 0.3345 -4.2720 0.3868 18 6 0.4080 -4.2133 -0.9154 19 7 1.0675 -3.0910 -1.2684 20 6 1.3479 -2.6795 -2.6456 21 6 1.1681 -3.8890 -3.5695 22 6 -0.1843 -4.5501 -3.2867 23 6 -0.1417 -5.2147 -1.9047 24 1 -0.3633 0.0807 -1.0245 25 1 -0.3633 -0.9277 0.4422 26 1 -0.3633 0.8468 0.5821 27 1 3.1499 1.1383 -0.5138 28 1 1.6084 2.0283 -0.5140 29 1 4.0293 4.4445 0.8501 30 1 0.6560 -1.8901 -2.9389 31 1 2.3726 -2.3146 -2.7163 32 1 1.9683 -4.6066 -3.3884 33 1 1.2021 -3.5609 -4.6083 34 1 -0.3869 -5.3043 -4.0472 35 1 -0.9696 -3.7944 -3.3040 36 1 0.5041 -6.0921 -1.9370 37 1 -1.1483 -5.5099 -1.6082 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837362091.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:04 Heat of formation + Delta-G solvation = 24.230558 kcal Electronic energy + Delta-G solvation = -22182.665228 eV Core-core repulsion = 18814.109969 eV Total energy + Delta-G solvation = -3368.555259 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.49325 -38.76877 -36.86327 -34.92856 -33.48096 -32.60168 -31.51169 -29.49803 -29.03434 -27.61366 -25.95024 -24.62808 -23.38476 -22.39975 -21.39434 -19.60620 -18.79147 -17.13383 -16.55076 -16.37390 -15.70972 -15.38875 -14.79269 -14.66064 -14.51324 -14.41652 -14.09158 -13.79036 -12.98211 -12.93577 -12.50309 -12.29959 -12.15746 -11.90116 -11.54580 -11.53134 -11.39493 -11.26039 -10.90776 -10.74859 -10.63679 -10.44800 -10.18212 -9.95209 -9.67422 -9.55799 -9.29253 -8.45162 -8.22475 -7.79857 -6.06311 -4.10201 1.62217 1.65867 2.40067 2.77286 3.20251 3.32869 3.38920 3.42916 3.79748 4.05080 4.24711 4.33300 4.37211 4.45151 4.84025 4.88115 5.00448 5.11391 5.21693 5.29383 5.35103 5.42607 5.47237 5.56556 5.63569 5.76670 5.81803 6.07306 6.11318 6.18871 6.86096 6.96707 7.29110 7.40581 7.77021 7.90219 8.17322 8.20068 8.73658 8.96185 9.54931 11.02159 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.014551 B = 0.004861 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.843530 B = 5758.438208 C = 7234.519253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.582 5.582 3 C 0.247 3.753 4 C -0.524 4.524 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.577 3.423 13 O -0.513 6.513 14 C -0.001 4.001 15 C 0.033 3.967 16 Br 0.025 6.975 17 N -0.465 5.465 18 C 0.221 3.779 19 N -0.427 5.427 20 C 0.097 3.903 21 C -0.134 4.134 22 C -0.126 4.126 23 C -0.031 4.031 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.044 0.956 28 H 0.037 0.963 29 H 0.263 0.737 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.264 -16.183 -8.328 20.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.313 5.313 3 C 0.128 3.872 4 C -0.563 4.563 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.359 3.641 13 O -0.388 6.388 14 C -0.123 4.123 15 C -0.178 4.178 16 Br 0.108 6.892 17 N -0.185 5.185 18 C -0.043 4.043 19 N -0.110 5.110 20 C -0.025 4.025 21 C -0.171 4.171 22 C -0.164 4.164 23 C -0.070 4.070 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.786 -16.378 -7.362 20.450 hybrid contribution 0.518 0.973 0.255 1.131 sum -9.268 -15.405 -7.107 19.332 Atomic orbital electron populations 1.21653 0.80993 1.02869 1.00551 1.48133 1.06455 1.07108 1.69634 1.19397 0.92305 0.77372 0.98090 1.21416 1.36528 1.06239 0.92129 0.92024 1.24904 0.95260 0.96290 0.97466 1.69919 1.38470 1.14422 1.30767 0.86508 0.78948 0.77466 0.84639 1.20455 1.21167 1.19768 1.16733 0.86547 0.81558 0.79214 1.90853 1.12883 1.86154 1.48920 1.21085 1.06969 0.98711 0.85568 1.22083 1.07231 0.96108 0.92342 1.96734 1.97148 1.93594 1.01710 1.69744 1.21326 1.22007 1.05399 1.23286 0.99408 0.90230 0.91356 1.45322 1.41072 1.18230 1.06418 1.22169 1.03993 0.98781 0.77515 1.21924 0.98821 0.96681 0.99718 1.21711 0.97339 1.00904 0.96464 1.20263 1.02285 0.94425 0.90018 0.93876 0.92361 0.90159 0.93832 0.94464 0.92708 0.88979 0.88426 0.90332 0.88810 0.89669 0.90822 0.88947 0.88319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.43 10.28 59.85 0.62 2.04 16 2 N -0.58 -12.53 2.86 -184.53 -0.53 -13.06 16 3 C 0.25 6.33 5.14 -5.20 -0.03 6.31 16 4 C -0.52 -14.79 9.38 -34.44 -0.32 -15.11 16 5 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 7 N -0.90 -26.30 13.29 55.43 0.74 -25.56 16 8 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 9 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 12 C 0.58 12.66 7.06 -12.87 -0.09 12.57 16 13 O -0.51 -13.40 16.75 5.19 0.09 -13.31 16 14 C 0.00 -0.01 4.95 -82.30 -0.41 -0.42 16 15 C 0.03 0.60 7.22 -17.28 -0.12 0.48 16 16 Br 0.03 0.45 33.86 -68.01 -2.30 -1.85 16 17 N -0.47 -7.77 11.20 -8.76 -0.10 -7.87 16 18 C 0.22 2.99 7.63 -155.32 -1.19 1.80 16 19 N -0.43 -6.18 3.16 -109.73 -0.35 -6.52 16 20 C 0.10 1.03 6.79 -3.94 -0.03 1.01 16 21 C -0.13 -0.91 5.95 -26.51 -0.16 -1.06 16 22 C -0.13 -0.74 5.96 -26.44 -0.16 -0.90 16 23 C -0.03 -0.25 6.33 -27.47 -0.17 -0.43 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.96 6.50 -51.93 -0.34 0.62 16 26 H 0.08 1.38 8.10 -51.93 -0.42 0.95 16 27 H 0.04 1.24 7.51 -51.93 -0.39 0.85 16 28 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.45 8.12 -51.93 -0.42 0.02 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 333.65 15.07 5.03 5.03 Total: -1.00 -34.52 333.65 -9.52 -44.04 By element: Atomic # 1 Polarization: -0.91 SS G_CDS: -4.91 Total: -5.83 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: -2.16 Total: 7.96 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -0.24 Total: -53.02 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.09 Total: -13.31 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 35 Polarization: 0.45 SS G_CDS: -2.30 Total: -1.85 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.52 -9.52 -44.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837362091.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.266 kcal (2) G-P(sol) polarization free energy of solvation -34.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds