Wall clock time and date at job start Tue Mar 31 2020 23:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.08990 * 109.47170 * 54.99895 * 11 10 9 13 13 N 1.46901 * 109.47143 * 294.99574 * 11 10 9 14 14 C 1.50700 * 109.46738 * 175.00110 * 11 10 9 15 15 O 1.21283 * 120.00142 * 100.00354 * 14 11 10 16 16 N 1.34775 * 120.00303 * 279.99439 * 14 11 10 17 17 C 1.46496 * 120.00555 * 180.02562 * 16 14 11 18 18 C 1.50700 * 109.47288 * 179.97438 * 17 16 14 19 19 C 1.38238 * 119.60153 * 94.72830 * 18 17 16 20 20 C 1.38615 * 119.17030 * 179.77242 * 19 18 17 21 21 C 1.38752 * 118.41060 * 0.49355 * 20 19 18 22 22 Br 1.89103 * 120.42695 * 179.76891 * 21 20 19 23 23 C 1.38280 * 119.14637 * 359.75309 * 21 20 19 24 24 N 1.31849 * 119.61296 * 275.00726 * 18 17 16 25 25 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 27 27 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 28 28 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 29 29 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 30 30 H 1.00897 * 111.00316 * 176.04452 * 13 11 10 31 31 H 1.00902 * 111.00138 * 300.00948 * 13 11 10 32 32 H 0.97005 * 119.99246 * 0.02562 * 16 14 11 33 33 H 1.08992 * 109.47266 * 300.00471 * 17 16 14 34 34 H 1.09001 * 109.46731 * 60.00326 * 17 16 14 35 35 H 1.07996 * 120.41149 * 0.02562 * 19 18 17 36 36 H 1.07995 * 120.79327 * 180.21665 * 20 19 18 37 37 H 1.07997 * 119.62734 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 1 0.7882 -5.0067 -0.8421 13 7 0.7279 -5.1189 1.2549 14 6 2.4547 -6.1298 -0.1239 15 8 2.7861 -6.7537 0.8619 16 7 2.9580 -6.4586 -1.3302 17 6 3.9050 -7.5698 -1.4507 18 6 4.3115 -7.7293 -2.8930 19 6 5.4655 -7.1196 -3.3486 20 6 5.8335 -7.2761 -4.6758 21 6 5.0174 -8.0353 -5.5021 22 35 5.4617 -8.2806 -7.3237 23 6 3.8752 -8.6106 -4.9762 24 7 3.5595 -8.4440 -3.7067 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5566 0.8902 28 1 2.8718 -3.6044 0.8905 29 1 2.8718 -3.6044 -0.8895 30 1 0.1635 -5.9552 1.2521 31 1 1.3475 -5.1033 2.0511 32 1 2.6930 -5.9595 -2.1186 33 1 4.7871 -7.3627 -0.8449 34 1 3.4330 -8.4887 -1.1029 35 1 6.0748 -6.5321 -2.6778 36 1 6.7316 -6.8143 -5.0587 37 1 3.2342 -9.2028 -5.6125 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867999889.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:12 Heat of formation + Delta-G solvation = -12.084249 kcal Electronic energy + Delta-G solvation = -20473.367418 eV Core-core repulsion = 17103.237431 eV Total energy + Delta-G solvation = -3370.129987 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.90613 -39.66779 -35.60176 -35.02636 -33.47214 -32.80574 -32.48545 -30.48908 -30.08706 -27.42861 -25.83285 -24.24093 -23.53983 -22.23638 -20.71767 -19.87599 -17.74178 -17.25927 -16.81256 -16.39265 -16.05507 -15.64446 -15.45909 -14.84929 -14.54790 -14.41227 -14.05189 -13.79684 -13.59888 -13.28381 -12.79818 -12.34356 -12.27876 -12.01617 -11.77307 -11.55006 -10.97181 -10.88675 -10.70171 -10.58713 -10.33000 -10.20382 -10.03010 -9.81274 -9.42789 -9.36292 -9.17172 -9.01531 -8.36074 -8.21396 -5.94365 -3.96759 0.23541 0.64253 0.99665 2.72900 2.88742 3.35156 3.40024 3.41874 3.45326 3.70622 4.09505 4.22550 4.36426 4.49140 4.63615 4.86383 5.06108 5.09600 5.14365 5.33415 5.41023 5.45945 5.50656 5.54624 5.81662 5.93501 6.28447 6.42041 6.63136 7.07120 7.30985 7.34206 7.53951 7.75107 7.79410 7.95323 8.12537 8.24480 8.47389 9.11088 9.66334 11.16506 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.012369 B = 0.002323 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.106330 B =12050.966668 C =13714.354802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.051 0.949 9 C 0.031 3.969 10 C -0.095 4.095 11 C 0.080 3.920 12 H 0.099 0.901 13 N -0.806 5.806 14 C 0.486 3.514 15 O -0.552 6.552 16 N -0.725 5.725 17 C 0.169 3.831 18 C 0.125 3.875 19 C -0.145 4.145 20 C -0.045 4.045 21 C -0.144 4.144 22 Br -0.032 7.032 23 C 0.134 3.866 24 N -0.459 5.459 25 H 0.260 0.740 26 H 0.013 0.987 27 H 0.035 0.965 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.335 0.665 31 H 0.348 0.652 32 H 0.404 0.596 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.223 -20.679 -15.103 28.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.069 0.931 9 C -0.006 4.006 10 C -0.133 4.133 11 C -0.036 4.036 12 H 0.116 0.884 13 N -0.334 5.334 14 C 0.272 3.728 15 O -0.429 6.429 16 N -0.378 5.378 17 C 0.044 3.956 18 C -0.013 4.013 19 C -0.166 4.166 20 C -0.072 4.072 21 C -0.226 4.226 22 Br 0.053 6.947 23 C -0.025 4.025 24 N -0.169 5.169 25 H 0.070 0.930 26 H 0.031 0.969 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.146 0.854 31 H 0.162 0.838 32 H 0.239 0.761 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.168 0.832 36 H 0.166 0.834 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 11.342 -20.796 -14.904 27.986 hybrid contribution 1.691 0.664 -0.399 1.860 sum 13.032 -20.132 -15.304 28.449 Atomic orbital electron populations 1.69966 1.05951 1.26546 1.50687 1.24992 0.94806 0.99043 0.95469 0.86710 0.79613 0.83443 0.78508 1.20390 1.21327 1.20308 1.21237 0.92840 0.91340 1.50785 0.93053 1.19012 0.93561 0.89785 0.98232 1.21661 0.98863 0.92164 1.00643 1.21848 0.93475 0.93102 0.95204 0.88355 1.58994 1.26844 1.44342 1.03220 1.22826 0.82025 0.85740 0.82172 1.90655 1.61001 1.54235 1.37032 1.46101 1.46602 1.34331 1.10776 1.20098 0.94409 0.92065 0.89004 1.21435 0.91225 0.92578 0.96053 1.22151 0.98095 1.00294 0.96081 1.21644 0.98523 0.94203 0.92870 1.23054 1.00671 1.05545 0.93336 1.96792 1.93376 1.96454 1.08077 1.22888 0.92865 0.95299 0.91476 1.67683 1.30731 1.14858 1.03586 0.93022 0.96892 0.94626 0.92770 0.92890 0.85362 0.83791 0.76113 0.89590 0.89570 0.83237 0.83374 0.81534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 8 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 9 C 0.03 0.79 4.86 -27.89 -0.14 0.65 16 10 C -0.09 -1.87 4.78 -26.73 -0.13 -2.00 16 11 C 0.08 1.31 3.15 -68.86 -0.22 1.09 16 12 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 13 N -0.81 -13.42 8.44 -5.66 -0.05 -13.47 16 14 C 0.49 7.40 7.07 -10.99 -0.08 7.32 16 15 O -0.55 -9.79 16.25 5.55 0.09 -9.70 16 16 N -0.72 -8.83 5.55 -61.48 -0.34 -9.17 16 17 C 0.17 1.79 5.98 -5.20 -0.03 1.76 16 18 C 0.13 1.19 6.15 -82.58 -0.51 0.68 16 19 C -0.15 -1.13 9.72 -39.44 -0.38 -1.52 16 20 C -0.04 -0.33 9.94 -39.25 -0.39 -0.72 16 21 C -0.14 -1.13 6.25 -39.38 -0.25 -1.38 16 22 Br -0.03 -0.22 33.74 -68.01 -2.29 -2.52 16 23 C 0.13 1.14 10.95 -17.52 -0.19 0.95 16 24 N -0.46 -4.71 10.27 -9.45 -0.10 -4.80 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 28 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.33 4.85 9.06 -39.29 -0.36 4.49 16 31 H 0.35 5.84 8.58 -39.29 -0.34 5.51 16 32 H 0.40 4.50 8.46 -40.82 -0.35 4.15 16 33 H 0.09 0.86 8.04 -51.93 -0.42 0.45 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 37 H 0.17 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 344.64 15.07 5.19 5.19 Total: -1.00 -32.65 344.64 -9.28 -41.93 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -4.78 Total: 8.61 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -2.72 Total: -6.56 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.25 Total: -53.53 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 35 Polarization: -0.22 SS G_CDS: -2.29 Total: -2.52 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.65 -9.28 -41.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867999889.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.850 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds