Wall clock time and date at job start Tue Mar 31 2020 23:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00043 * 2 1 4 4 H 1.48500 * 109.47171 * 239.99550 * 3 2 1 5 5 H 1.48506 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47231 * 119.99469 * 3 2 1 7 7 C 1.37878 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00346 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99793 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47253 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47196 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.47013 * 179.97438 * 11 10 9 13 13 C 1.34774 * 119.99835 * 179.97438 * 12 11 10 14 14 O 1.21591 * 119.99905 * 0.02562 * 13 12 11 15 15 N 1.34770 * 120.00000 * 179.97438 * 13 12 11 16 16 C 1.46509 * 120.00335 * 180.02562 * 15 13 12 17 17 C 1.50690 * 109.47300 * 180.02562 * 16 15 13 18 18 C 1.38233 * 119.60853 * 95.00063 * 17 16 15 19 19 C 1.38613 * 119.17625 * 179.97438 * 18 17 16 20 20 C 1.38752 * 118.40879 * 0.25567 * 19 18 17 21 21 Br 1.89107 * 120.42763 * 179.75035 * 20 19 18 22 22 C 1.38281 * 119.14439 * 359.51903 * 20 19 18 23 23 N 1.31858 * 119.60924 * 275.02486 * 17 16 15 24 24 H 0.96997 * 119.99682 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46863 * 60.00265 * 9 7 2 26 26 H 1.09007 * 109.47456 * 300.00584 * 9 7 2 27 27 H 1.08993 * 109.47000 * 60.00003 * 10 9 7 28 28 H 1.09000 * 109.46663 * 299.99840 * 10 9 7 29 29 H 1.09001 * 109.47175 * 59.99906 * 11 10 9 30 30 H 1.09003 * 109.46712 * 300.00091 * 11 10 9 31 31 H 0.96997 * 120.00085 * 359.97438 * 12 11 10 32 32 H 0.97000 * 120.00188 * 0.02562 * 15 13 12 33 33 H 1.09001 * 109.46462 * 60.00001 * 16 15 13 34 34 H 1.08995 * 109.46501 * 300.00606 * 16 15 13 35 35 H 1.08002 * 120.41515 * 0.02562 * 18 17 16 36 36 H 1.08002 * 120.79267 * 179.97438 * 19 18 17 37 37 H 1.08007 * 119.62545 * 180.20793 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4804 -4.9871 0.0012 12 7 2.4324 -6.1006 0.0018 13 6 1.9831 -7.3713 0.0019 14 8 0.7877 -7.5935 0.0010 15 7 2.8589 -8.3957 0.0020 16 6 2.3706 -9.7770 0.0015 17 6 3.5427 -10.7241 0.0023 18 6 4.0071 -11.2349 1.1999 19 6 5.0855 -12.1058 1.1901 20 6 5.6628 -12.4280 -0.0298 21 35 7.1410 -13.6048 -0.1087 22 6 5.1404 -11.8812 -1.1874 23 7 4.1133 -11.0554 -1.1393 24 1 -0.4849 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8713 -3.6040 0.8922 28 1 2.8726 -3.6047 -0.8877 29 1 0.8547 -5.0450 -0.8895 30 1 0.8527 -5.0446 0.8905 31 1 3.3860 -5.9234 0.0021 32 1 3.8126 -8.2185 0.0023 33 1 1.7653 -9.9480 -0.8887 34 1 1.7647 -9.9483 0.8912 35 1 3.5352 -10.9596 2.1315 36 1 5.4699 -12.5201 2.1104 37 1 5.5817 -12.1293 -2.1415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868212140.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:14 Heat of formation + Delta-G solvation = -29.680126 kcal Electronic energy + Delta-G solvation = -19755.404202 eV Core-core repulsion = 16384.511201 eV Total energy + Delta-G solvation = -3370.893001 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.60117 -40.83502 -37.15916 -36.10478 -35.17427 -34.14826 -33.32113 -32.74644 -31.01663 -28.71524 -27.16677 -24.90655 -24.73368 -23.02809 -22.28890 -21.89270 -19.50457 -18.55556 -17.97997 -17.76379 -17.15867 -16.81129 -16.50419 -16.33385 -15.71145 -15.64707 -15.29489 -14.94663 -14.49128 -14.24388 -14.10529 -13.88565 -13.72150 -13.36619 -12.89023 -12.69976 -12.53349 -12.38782 -12.36969 -11.66753 -11.64370 -11.52690 -11.32662 -11.16108 -10.90143 -10.64218 -10.52845 -10.42765 -9.98919 -9.80153 -8.17506 -6.28933 -0.39597 0.07400 0.42904 1.42736 1.45828 1.53564 1.66590 2.13125 2.43124 2.53490 3.01898 3.15999 3.37032 3.50260 3.69670 3.80488 4.03348 4.19268 4.26231 4.44567 4.58896 4.59111 4.62093 4.78388 4.91195 4.98810 5.01452 5.19224 5.32608 5.37684 5.48189 5.55979 5.73748 5.86391 5.94750 6.24617 6.70921 6.88087 7.06132 7.40337 7.54888 8.94253 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.026919 B = 0.001528 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.915869 B =18325.236922 C =19058.733389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.023 3.977 10 C -0.101 4.101 11 C 0.150 3.850 12 N -0.729 5.729 13 C 0.702 3.298 14 O -0.636 6.636 15 N -0.726 5.726 16 C 0.192 3.808 17 C 0.114 3.886 18 C -0.137 4.137 19 C -0.043 4.043 20 C -0.145 4.145 21 Br -0.025 7.025 22 C 0.125 3.875 23 N -0.484 5.484 24 H 0.263 0.737 25 H -0.008 1.008 26 H -0.006 1.006 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.411 0.589 32 H 0.409 0.591 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.171 0.829 36 H 0.172 0.828 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.501 -33.218 2.642 38.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.015 4.015 10 C -0.139 4.139 11 C 0.025 3.975 12 N -0.385 5.385 13 C 0.402 3.598 14 O -0.517 6.517 15 N -0.383 5.383 16 C 0.068 3.932 17 C -0.023 4.023 18 C -0.158 4.158 19 C -0.071 4.071 20 C -0.227 4.227 21 Br 0.060 6.940 22 C -0.035 4.035 23 N -0.194 5.194 24 H 0.072 0.928 25 H 0.011 0.989 26 H 0.012 0.988 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.248 0.752 32 H 0.245 0.755 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.189 0.811 36 H 0.189 0.811 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 17.474 -33.390 1.832 37.731 hybrid contribution 0.693 1.013 0.547 1.344 sum 18.167 -32.377 2.379 37.202 Atomic orbital electron populations 1.70108 1.07902 1.27807 1.51612 1.26029 0.95767 1.03542 0.94837 0.85470 0.78177 0.77960 0.79229 1.19116 1.21208 1.19001 1.21655 0.93741 0.92024 1.50527 0.91543 1.18951 0.94479 0.92908 0.95166 1.21589 0.98443 0.91736 1.02094 1.21091 0.91304 0.84489 1.00609 1.45018 1.10879 1.03512 1.79066 1.16043 0.84887 0.81245 0.77665 1.90908 1.16192 1.84734 1.59903 1.44771 1.09271 1.04072 1.80180 1.19923 0.92116 0.77399 1.03800 1.21263 0.95652 0.96152 0.89257 1.22325 0.96666 0.96858 0.99909 1.21950 0.93316 0.93996 0.97815 1.23174 0.99055 1.02644 0.97857 1.96816 1.38226 1.59902 1.99091 1.23103 0.91018 0.90992 0.98353 1.67631 1.09046 1.12851 1.29872 0.92849 0.98946 0.98793 0.91261 0.91514 0.93549 0.93185 0.75233 0.75508 0.91295 0.88691 0.81110 0.81080 0.80503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.12 13.29 21.45 0.28 -56.83 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 3 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.54 -30.19 9.11 25.60 0.23 -29.95 16 8 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.02 1.18 4.97 29.85 0.15 1.33 16 10 C -0.10 -3.86 5.27 30.59 0.16 -3.70 16 11 C 0.15 5.32 5.67 86.38 0.49 5.81 16 12 N -0.73 -20.17 5.56 -478.53 -2.66 -22.83 16 13 C 0.70 20.62 8.57 179.06 1.53 22.16 16 14 O -0.64 -24.72 16.34 -4.00 -0.07 -24.79 16 15 N -0.73 -14.66 5.55 -482.30 -2.68 -17.34 16 16 C 0.19 3.52 5.98 85.63 0.51 4.03 16 17 C 0.11 1.69 6.15 42.55 0.26 1.95 16 18 C -0.14 -1.31 9.72 22.36 0.22 -1.09 16 19 C -0.04 -0.37 9.94 22.48 0.22 -0.15 16 20 C -0.15 -1.59 6.25 22.40 0.14 -1.45 16 21 Br -0.03 -0.25 33.74 -20.37 -0.69 -0.93 16 22 C 0.12 1.66 10.95 84.70 0.93 2.59 16 23 N -0.48 -8.32 10.27 -183.81 -1.89 -10.20 16 24 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 25 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 26 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 27 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.41 8.52 8.49 -92.71 -0.79 7.73 16 32 H 0.41 6.17 8.48 -92.71 -0.79 5.38 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.10 1.59 8.04 -2.39 -0.02 1.57 16 35 H 0.17 0.86 8.06 -2.91 -0.02 0.83 16 36 H 0.17 0.62 8.06 -2.91 -0.02 0.60 16 37 H 0.18 1.78 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -73.30 345.87 -0.83 -74.13 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -0.47 Total: 11.24 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 5.31 Total: 1.77 kcal Atomic # 7 Polarization: -100.26 SS G_CDS: -6.94 Total: -107.21 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.07 Total: -24.79 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 35 Polarization: -0.25 SS G_CDS: -0.69 Total: -0.93 kcal Total: -73.30 -0.83 -74.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868212140.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.448 kcal (2) G-P(sol) polarization free energy of solvation -73.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds