Wall clock time and date at job start Tue Mar 31 2020 23:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34233 * 117.00070 * 2 1 4 4 O 1.20823 * 119.99815 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00151 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.47155 * 179.97438 * 5 3 2 7 7 C 1.36938 * 119.99953 * 270.27723 * 6 5 3 8 8 H 1.07996 * 120.00116 * 144.51590 * 7 6 5 9 9 C 1.38818 * 119.99869 * 324.51081 * 7 6 5 10 10 N 1.31620 * 119.99939 * 157.48580 * 9 7 6 11 11 Si 1.86800 * 119.99884 * 337.48746 * 9 7 6 12 12 H 1.48496 * 109.47042 * 95.39797 * 11 9 7 13 13 H 1.48500 * 109.46939 * 215.39249 * 11 9 7 14 14 H 1.48496 * 109.47218 * 335.39612 * 11 9 7 15 15 C 1.46501 * 119.99717 * 90.00017 * 6 5 3 16 16 C 1.53001 * 109.46940 * 86.41901 * 15 6 5 17 17 C 1.50703 * 109.46833 * 184.45725 * 16 15 6 18 18 C 1.38243 * 120.00328 * 94.30082 * 17 16 15 19 19 C 1.38219 * 120.01033 * 179.97438 * 18 17 16 20 20 C 1.38263 * 120.01869 * 0.02562 * 19 18 17 21 21 C 1.38197 * 120.01176 * 359.97438 * 20 19 18 22 22 C 1.38295 * 120.00451 * 274.02264 * 17 16 15 23 23 Br 1.89103 * 120.01395 * 0.02612 * 22 17 16 24 24 H 1.08999 * 109.47410 * 300.00351 * 1 2 3 25 25 H 1.08995 * 109.46801 * 60.00488 * 1 2 3 26 26 H 1.08995 * 109.47100 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46794 * 59.99644 * 5 3 2 28 28 H 1.08995 * 109.46718 * 299.99917 * 5 3 2 29 29 H 0.96991 * 120.00239 * 179.97438 * 10 9 7 30 30 H 1.09003 * 109.47016 * 206.41550 * 15 6 5 31 31 H 1.08994 * 109.47394 * 326.41272 * 15 6 5 32 32 H 1.08997 * 109.46904 * 304.45707 * 16 15 6 33 33 H 1.08990 * 109.47315 * 64.45901 * 16 15 6 34 34 H 1.08005 * 119.99420 * 359.97438 * 18 17 16 35 35 H 1.07995 * 119.98965 * 179.97438 * 19 18 17 36 36 H 1.07994 * 119.99589 * 179.97438 * 20 19 18 37 37 H 1.07998 * 120.00852 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.1709 3.3372 -1.1864 8 1 3.9134 4.3826 -1.2714 9 6 4.6936 2.6600 -2.2796 10 7 4.4769 3.1096 -3.4975 11 14 5.7045 1.1104 -2.0222 12 1 4.8290 -0.0808 -2.1620 13 1 6.7867 1.0511 -3.0374 14 1 6.3016 1.1291 -0.6627 15 6 4.1889 3.3830 1.2682 16 6 5.6195 3.1448 1.7557 17 6 5.7996 3.7762 3.1122 18 6 5.6210 3.0203 4.2558 19 6 5.7867 3.5991 5.4999 20 6 6.1306 4.9345 5.6013 21 6 6.3093 5.6909 4.4586 22 6 6.1492 5.1104 3.2130 23 35 6.4006 6.1432 1.6490 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.9564 0.7806 -0.8891 28 1 3.9557 0.7810 0.8908 29 1 4.8424 2.6367 -4.2613 30 1 4.0280 4.4511 1.1220 31 1 3.4847 3.0079 2.0109 32 1 5.8055 2.0731 1.8261 33 1 6.3221 3.5901 1.0515 34 1 5.3519 1.9773 4.1770 35 1 5.6467 3.0084 6.3931 36 1 6.2595 5.3865 6.5736 37 1 6.5783 6.7339 4.5379 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878166917.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:16 Heat of formation + Delta-G solvation = -28.968068 kcal Electronic energy + Delta-G solvation = -21722.825198 eV Core-core repulsion = 18319.670323 eV Total energy + Delta-G solvation = -3403.154875 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.63971 -39.32779 -36.53915 -35.30552 -33.23967 -32.04822 -31.51039 -29.43570 -28.81769 -27.63241 -26.19551 -24.28998 -22.40852 -21.68733 -20.82537 -19.87325 -17.30824 -16.88535 -16.59159 -16.09673 -15.55719 -15.48740 -15.12175 -14.95209 -14.30507 -13.49704 -13.43296 -13.23907 -13.09871 -12.83588 -12.77903 -12.29338 -12.08476 -11.75061 -11.60251 -11.42355 -11.13703 -10.96796 -10.75647 -10.68171 -10.27019 -10.16851 -10.05961 -9.77703 -9.68554 -9.61159 -8.82963 -8.64338 -8.50751 -7.09746 -6.07860 -3.49018 1.15878 1.32475 1.89470 3.05925 3.20310 3.36315 3.40419 3.43225 3.66214 4.40012 4.68443 4.83789 4.90422 5.04132 5.23482 5.33803 5.42238 5.45494 5.51280 5.60869 5.66495 5.75931 5.83890 5.88735 5.94703 6.00424 6.18795 6.20278 6.25038 6.35329 6.43152 6.77337 6.80934 6.92433 7.07519 7.86073 8.29346 8.58607 8.85327 9.57507 9.90609 11.07050 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.012239 B = 0.004874 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.212002 B = 5743.316428 C = 7012.515395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.378 6.378 3 C 0.426 3.574 4 O -0.491 6.491 5 C 0.140 3.860 6 N -0.569 5.569 7 C -0.263 4.263 8 H 0.086 0.914 9 C 0.036 3.964 10 N -0.888 5.888 11 Si 0.861 3.139 12 H -0.281 1.281 13 H -0.295 1.295 14 H -0.261 1.261 15 C 0.163 3.837 16 C -0.118 4.118 17 C -0.038 4.038 18 C -0.117 4.117 19 C -0.105 4.105 20 C -0.131 4.131 21 C -0.091 4.091 22 C -0.093 4.093 23 Br -0.038 7.038 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.265 0.735 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.005 -0.066 16.583 16.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.295 6.295 3 C 0.264 3.736 4 O -0.376 6.376 5 C 0.010 3.990 6 N -0.287 5.287 7 C -0.392 4.392 8 H 0.104 0.896 9 C -0.165 4.165 10 N -0.528 5.528 11 Si 0.691 3.309 12 H -0.209 1.209 13 H -0.223 1.223 14 H -0.185 1.185 15 C 0.037 3.963 16 C -0.158 4.158 17 C -0.040 4.040 18 C -0.136 4.136 19 C -0.124 4.124 20 C -0.150 4.150 21 C -0.111 4.111 22 C -0.173 4.173 23 Br 0.048 6.952 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.108 0.892 27 H 0.110 0.890 28 H 0.102 0.898 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.902 0.680 15.768 16.047 hybrid contribution 0.188 -1.087 0.292 1.141 sum 3.090 -0.406 16.061 16.360 Atomic orbital electron populations 1.23057 0.78702 1.02346 1.01899 1.86617 1.21980 1.35903 1.85034 1.26520 0.94202 0.80835 0.72018 1.90575 1.66704 1.36366 1.43955 1.21295 0.85330 0.89547 1.02814 1.43904 1.73609 1.07865 1.03369 1.18821 1.37164 0.96960 0.86237 0.89643 1.25430 0.97992 0.97890 0.95171 1.69873 1.44107 1.41185 0.97644 0.87165 0.81433 0.83707 0.78629 1.20942 1.22260 1.18507 1.20886 0.91123 0.97900 0.86390 1.21584 1.02437 1.00410 0.91342 1.20067 0.95030 0.91964 0.96967 1.21095 1.00867 1.00153 0.91522 1.21219 0.98485 0.95140 0.97551 1.21052 1.01606 0.94371 0.97962 1.21086 0.99084 1.00030 0.90899 1.21883 1.07641 0.95073 0.92699 1.96791 1.95818 1.69180 1.33384 0.92769 0.92463 0.89244 0.89036 0.89794 0.92473 0.91453 0.94180 0.91240 0.89120 0.85383 0.85837 0.85700 0.85407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 101.05 1.07 1.58 16 2 O -0.38 -7.11 10.57 -39.27 -0.41 -7.52 16 3 C 0.43 9.26 8.03 36.01 0.29 9.54 16 4 O -0.49 -12.10 16.18 -18.75 -0.30 -12.40 16 5 C 0.14 2.98 5.12 -5.19 -0.03 2.95 16 6 N -0.57 -13.21 1.61 -174.61 -0.28 -13.49 16 7 C -0.26 -7.21 9.92 -15.06 -0.15 -7.36 16 8 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 9 C 0.04 1.02 5.32 -17.43 -0.09 0.93 16 10 N -0.89 -26.65 13.97 55.49 0.78 -25.88 16 11 Si 0.86 20.72 24.96 -169.99 -4.24 16.48 16 12 H -0.28 -6.56 6.67 56.52 0.38 -6.19 16 13 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 14 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 15 C 0.16 3.22 5.65 -4.04 -0.02 3.20 16 16 C -0.12 -2.04 5.13 -27.88 -0.14 -2.19 16 17 C -0.04 -0.56 5.14 -104.60 -0.54 -1.10 16 18 C -0.12 -1.47 9.68 -39.59 -0.38 -1.85 16 19 C -0.11 -1.12 10.05 -39.58 -0.40 -1.52 16 20 C -0.13 -1.37 10.05 -39.59 -0.40 -1.77 16 21 C -0.09 -1.10 9.79 -39.55 -0.39 -1.49 16 22 C -0.09 -1.35 6.22 -39.52 -0.25 -1.60 16 23 Br -0.04 -0.59 31.47 -68.01 -2.14 -2.73 16 24 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 25 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 26 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.09 2.09 2.98 -51.93 -0.15 1.94 16 28 H 0.08 1.47 8.07 -51.93 -0.42 1.05 16 29 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.07 1.41 7.60 -51.93 -0.39 1.01 16 31 H 0.04 0.74 8.10 -51.93 -0.42 0.32 16 32 H 0.07 1.15 8.06 -51.93 -0.42 0.73 16 33 H 0.09 1.73 6.84 -51.93 -0.36 1.38 16 34 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 334.93 15.07 5.05 5.05 Total: -1.00 -31.89 334.93 -7.69 -39.58 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -4.70 Total: 1.58 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -1.43 Total: -0.66 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.49 Total: -39.37 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.72 Total: -19.93 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.24 Total: 16.48 kcal Atomic # 35 Polarization: -0.59 SS G_CDS: -2.14 Total: -2.73 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.89 -7.69 -39.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878166917.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.613 kcal (2) G-P(sol) polarization free energy of solvation -31.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds