Wall clock time and date at job start Tue Mar 31 2020 23:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00610 * 2 1 4 4 H 1.48496 * 109.46994 * 240.00286 * 3 2 1 5 5 H 1.48500 * 109.46760 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47044 * 119.99929 * 3 2 1 7 7 C 1.38817 * 119.99300 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99330 * 196.99742 * 7 2 1 9 9 N 1.36931 * 120.00577 * 17.00127 * 7 2 1 10 10 C 1.47077 * 120.88419 * 206.58036 * 9 7 2 11 11 C 1.53246 * 108.52115 * 231.20552 * 10 9 7 12 12 N 1.46907 * 109.33685 * 306.17284 * 11 10 9 13 13 C 1.46905 * 110.99732 * 187.25532 * 12 11 10 14 14 C 1.50694 * 109.46970 * 169.99588 * 13 12 11 15 15 N 1.31844 * 119.64695 * 270.27021 * 14 13 12 16 16 C 1.31835 * 121.78614 * 180.24549 * 15 14 13 17 17 C 1.38351 * 120.87890 * 359.48227 * 16 15 14 18 18 Br 1.89092 * 120.40417 * 180.23138 * 17 16 15 19 19 C 1.38623 * 119.19452 * 0.24953 * 17 16 15 20 20 C 1.38718 * 119.64871 * 89.99793 * 14 13 12 21 21 O 1.35908 * 120.46644 * 0.04052 * 20 14 13 22 22 C 1.46894 * 111.27242 * 63.10278 * 12 11 10 23 23 C 1.47081 * 120.87740 * 26.60004 * 9 7 2 24 24 H 0.97001 * 119.99870 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.62978 * 111.49378 * 10 9 7 26 26 H 1.09002 * 109.78920 * 351.00305 * 10 9 7 27 27 H 1.08991 * 109.49639 * 186.20881 * 11 10 9 28 28 H 1.09008 * 109.51449 * 66.13815 * 11 10 9 29 29 H 1.09000 * 109.47041 * 49.99627 * 13 12 11 30 30 H 1.09004 * 109.46679 * 289.99630 * 13 12 11 31 31 H 1.08002 * 119.56416 * 179.74847 * 16 15 14 32 32 H 1.08001 * 120.81669 * 180.02562 * 19 17 16 33 33 H 0.96698 * 114.00779 * 269.98151 * 21 20 14 34 34 H 1.09001 * 109.49493 * 56.85231 * 22 12 11 35 35 H 1.08999 * 109.49364 * 176.93728 * 22 12 11 36 36 H 1.09007 * 109.62674 * 248.50464 * 23 9 7 37 37 H 1.09000 * 109.63369 * 9.08458 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0547 -1.2226 0.2740 9 7 1.3703 -2.3624 -0.3457 10 6 1.8307 -3.6610 0.1689 11 6 2.0028 -4.6200 -1.0139 12 7 0.7554 -4.6656 -1.7886 13 6 0.8195 -5.7007 -2.8291 14 6 -0.5470 -5.8878 -3.4362 15 7 -1.3785 -6.7669 -2.9127 16 6 -2.5816 -6.9682 -3.4126 17 6 -3.0242 -6.2499 -4.5091 18 35 -4.7550 -6.5449 -5.2112 19 6 -2.1832 -5.3116 -5.0871 20 6 -0.9187 -5.1292 -4.5366 21 8 -0.0595 -4.2210 -5.0695 22 6 0.4406 -3.3537 -2.3696 23 6 0.2046 -2.3428 -1.2424 24 1 -0.4850 0.8401 -0.0004 25 1 1.0918 -4.0631 0.8619 26 1 2.7846 -3.5375 0.6818 27 1 2.2369 -5.6175 -0.6423 28 1 2.8143 -4.2696 -1.6517 29 1 1.1525 -6.6398 -2.3873 30 1 1.5224 -5.3940 -3.6037 31 1 -3.2321 -7.7005 -2.9576 32 1 -2.5020 -4.7360 -5.9435 33 1 -0.1345 -3.3364 -4.6861 34 1 1.2738 -3.0205 -2.9883 35 1 -0.4582 -3.4330 -2.9812 36 1 -0.6908 -2.6183 -0.6850 37 1 0.0840 -1.3452 -1.6646 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891901400.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:30 Heat of formation + Delta-G solvation = 37.810878 kcal Electronic energy + Delta-G solvation = -21999.358288 eV Core-core repulsion = 18631.391916 eV Total energy + Delta-G solvation = -3367.966372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.91225 -38.14569 -37.33791 -34.73892 -33.28357 -31.56652 -30.92461 -30.08127 -29.89685 -27.23500 -24.99215 -23.75943 -22.97902 -22.60790 -21.43440 -19.29253 -18.44866 -17.32518 -16.86132 -16.61748 -15.89847 -14.98967 -14.62999 -14.38482 -14.26999 -13.85946 -13.66874 -13.50827 -13.26733 -13.05375 -12.89607 -12.28932 -11.84099 -11.59370 -11.52807 -11.40649 -11.09886 -10.76395 -10.64169 -10.54867 -10.38457 -10.13588 -9.82315 -9.78177 -9.73757 -9.55456 -8.89868 -8.54876 -7.90935 -6.71621 -5.82249 -3.23490 0.58138 0.86568 1.23411 3.26507 3.35955 3.41989 3.42853 3.86398 4.09249 4.32887 4.46557 4.51391 4.59572 4.96254 5.05876 5.31907 5.34530 5.42585 5.56566 5.66926 5.73159 5.81221 5.89099 6.02082 6.10507 6.13935 6.22568 6.42372 6.60834 6.89919 7.15769 7.28902 7.44938 7.54256 7.61300 7.71620 7.76418 8.38687 9.16756 9.80032 10.38569 11.26712 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.019556 B = 0.002943 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.456414 B = 9513.200287 C =10197.802048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.594 5.594 10 C 0.149 3.851 11 C 0.046 3.954 12 N -0.523 5.523 13 C 0.098 3.902 14 C 0.144 3.856 15 N -0.441 5.441 16 C 0.125 3.875 17 C -0.137 4.137 18 Br -0.036 7.036 19 C -0.075 4.075 20 C 0.072 3.928 21 O -0.490 6.490 22 C 0.031 3.969 23 C 0.179 3.821 24 H 0.255 0.745 25 H 0.027 0.973 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.031 0.969 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.167 0.833 32 H 0.149 0.851 33 H 0.398 0.602 34 H 0.033 0.967 35 H 0.047 0.953 36 H 0.026 0.974 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.337 -14.295 -12.325 20.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.317 5.317 10 C 0.022 3.978 11 C -0.083 4.083 12 N -0.248 5.248 13 C -0.031 4.031 14 C 0.005 3.995 15 N -0.151 5.151 16 C -0.034 4.034 17 C -0.218 4.218 18 Br 0.048 6.952 19 C -0.103 4.103 20 C 0.023 3.977 21 O -0.302 6.302 22 C -0.098 4.098 23 C 0.053 3.947 24 H 0.065 0.935 25 H 0.045 0.955 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.049 0.951 29 H 0.110 0.890 30 H 0.074 0.926 31 H 0.184 0.816 32 H 0.167 0.833 33 H 0.259 0.741 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.044 0.956 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.981 -15.272 -11.853 20.915 hybrid contribution 0.841 2.078 -0.952 2.435 sum -7.140 -13.194 -12.805 19.724 Atomic orbital electron populations 1.70018 1.05217 1.25629 1.53983 1.25021 0.95294 0.98359 1.00952 0.86363 0.78902 0.83336 0.78139 1.21079 1.21609 1.20860 1.19165 0.92614 0.84734 1.41783 0.91581 1.44086 1.34035 1.01353 1.52261 1.20985 0.97956 0.86322 0.92539 1.22650 0.88973 0.99861 0.96775 1.61959 1.35105 1.04956 1.22776 1.20973 0.89778 0.97929 0.94393 1.21801 0.96587 0.91185 0.89968 1.67711 1.02683 1.16752 1.27921 1.22878 0.92663 0.96717 0.91165 1.22870 0.94247 1.03211 1.01515 1.96741 1.17166 1.96007 1.85248 1.21868 0.91900 0.96719 0.99788 1.19178 0.89327 0.94888 0.94259 1.84809 1.58139 1.23053 1.64235 1.23071 0.97782 0.89974 0.99003 1.20852 0.89177 0.96297 0.88408 0.93543 0.95533 0.92389 0.91582 0.95065 0.89035 0.92555 0.81587 0.83306 0.74136 0.94856 0.93493 0.95610 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.80 11.15 55.49 0.62 -25.18 16 2 C 0.00 0.06 4.94 -17.43 -0.09 -0.03 16 3 Si 0.90 21.30 29.59 -169.99 -5.03 16.27 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.25 -6.84 9.63 -15.06 -0.15 -6.99 16 8 H 0.07 1.75 7.88 -52.48 -0.41 1.33 16 9 N -0.59 -14.72 3.04 -172.01 -0.52 -15.24 16 10 C 0.15 3.10 6.69 -3.60 -0.02 3.08 16 11 C 0.05 0.81 5.62 -3.69 -0.02 0.79 16 12 N -0.52 -9.10 4.62 -235.75 -1.09 -10.19 16 13 C 0.10 1.44 5.12 -4.98 -0.03 1.41 16 14 C 0.14 2.09 5.81 -82.41 -0.48 1.61 16 15 N -0.44 -6.35 10.27 -9.33 -0.10 -6.45 16 16 C 0.13 1.50 10.94 -17.51 -0.19 1.31 16 17 C -0.14 -1.55 6.24 -39.40 -0.25 -1.79 16 18 Br -0.04 -0.34 33.73 -68.01 -2.29 -2.64 16 19 C -0.08 -0.87 9.89 -39.11 -0.39 -1.26 16 20 C 0.07 0.95 5.53 -39.08 -0.22 0.74 16 21 O -0.49 -6.23 12.05 -19.45 -0.23 -6.46 16 22 C 0.03 0.56 4.15 -3.70 -0.02 0.55 16 23 C 0.18 4.18 5.42 -3.60 -0.02 4.16 16 24 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 27 H 0.07 0.99 7.99 -51.93 -0.41 0.57 16 28 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 29 H 0.09 1.26 7.97 -51.93 -0.41 0.85 16 30 H 0.06 0.81 7.50 -51.93 -0.39 0.42 16 31 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.40 4.41 6.55 45.56 0.30 4.71 16 34 H 0.03 0.61 8.02 -51.93 -0.42 0.19 16 35 H 0.05 0.77 4.56 -51.93 -0.24 0.53 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.09 2.29 6.12 -51.93 -0.32 1.97 16 LS Contribution 319.15 15.07 4.81 4.81 Total: -1.00 -30.04 319.15 -9.66 -39.70 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -3.97 Total: 1.81 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -1.86 Total: 3.58 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -1.09 Total: -57.06 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.23 Total: -6.46 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Atomic # 35 Polarization: -0.34 SS G_CDS: -2.29 Total: -2.64 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.04 -9.66 -39.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891901400.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.509 kcal (2) G-P(sol) polarization free energy of solvation -30.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds