Wall clock time and date at job start Tue Mar 31 2020 23:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21574 * 120.00034 * 359.97438 * 14 13 3 16 16 C 1.47678 * 119.99949 * 179.97438 * 14 13 3 17 17 N 1.31588 * 126.45764 * 359.69179 * 16 14 13 18 18 N 1.29333 * 110.37350 * 179.75387 * 17 16 14 19 19 C 1.35456 * 109.49556 * 0.61472 * 18 17 16 20 20 C 1.35485 * 107.58975 * 359.53182 * 19 18 17 21 21 Br 1.89103 * 127.27810 * 180.11696 * 20 19 18 22 22 C 1.51319 * 110.26944 * 179.41694 * 19 18 17 23 23 C 1.54537 * 104.17954 * 343.48140 * 22 19 18 24 24 C 1.47431 * 139.90282 * 180.37057 * 18 17 16 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 31 31 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 32 32 H 1.08997 * 110.48786 * 102.15297 * 22 19 18 33 33 H 1.09001 * 110.49000 * 224.80681 * 22 19 18 34 34 H 1.09001 * 110.95374 * 267.14918 * 23 22 19 35 35 H 1.08997 * 110.95408 * 143.42860 * 23 22 19 36 36 H 1.09007 * 110.21228 * 316.61695 * 24 18 17 37 37 H 1.08997 * 110.20990 * 78.52158 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3411 2.6326 0.4319 16 6 0.0443 3.3240 2.6291 17 7 0.7773 3.4273 3.7171 18 7 0.1321 4.0702 4.6353 19 6 -1.0938 4.4119 4.1714 20 6 -1.1908 3.9587 2.8984 21 35 -2.6662 4.1359 1.7287 22 6 -1.8699 5.1535 5.2380 23 6 -1.1073 4.8432 6.5458 24 6 0.3120 4.5403 6.0210 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8292 -0.0609 -2.9500 31 1 2.2719 2.1231 1.9979 32 1 -1.8645 6.2250 5.0383 33 1 -2.8924 4.7801 5.2948 34 1 -1.5313 3.9731 7.0472 35 1 -1.1014 5.7086 7.2083 36 1 0.7787 3.7622 6.6251 37 1 0.9199 5.4449 6.0358 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897400166.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:27 Heat of formation + Delta-G solvation = 50.192243 kcal Electronic energy + Delta-G solvation = -21741.390922 eV Core-core repulsion = 18373.961447 eV Total energy + Delta-G solvation = -3367.429475 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.89263 -38.76388 -36.59629 -34.94276 -32.54006 -32.28324 -30.98434 -29.99338 -29.29786 -27.21370 -26.78590 -23.80485 -22.60969 -21.75583 -20.61877 -19.84550 -19.05521 -17.30224 -16.97422 -16.19199 -15.57376 -15.22225 -14.88988 -14.46425 -14.21560 -13.94845 -13.65613 -13.14668 -13.00178 -12.66286 -12.56623 -12.08104 -11.94049 -11.58620 -11.37892 -11.18820 -11.00286 -10.94997 -10.86459 -10.77660 -10.26666 -10.09288 -9.95372 -9.53146 -9.05592 -8.99243 -8.92881 -8.59033 -8.43089 -7.71498 -6.05840 -4.14328 1.67633 1.76679 1.97927 2.35088 3.28331 3.35974 3.39305 3.63080 4.01822 4.04375 4.13147 4.27651 4.39569 4.55375 4.78647 4.96387 5.02728 5.17884 5.25611 5.27813 5.41121 5.47184 5.60405 6.13953 6.49083 6.50486 6.57056 6.76239 7.15064 7.29159 7.45359 7.52428 7.70197 7.79698 7.93707 8.01883 8.25044 8.76405 8.85042 9.19057 9.52464 10.99642 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.016280 B = 0.003837 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.486923 B = 7294.712481 C = 8523.049550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.052 0.948 5 C -0.531 4.531 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.691 5.691 14 C 0.582 3.418 15 O -0.519 6.519 16 C 0.035 3.965 17 N -0.236 5.236 18 N -0.310 5.310 19 C 0.020 3.980 20 C -0.145 4.145 21 Br 0.006 6.994 22 C -0.059 4.059 23 C -0.130 4.130 24 C 0.123 3.877 25 H 0.039 0.961 26 H 0.022 0.978 27 H 0.051 0.949 28 H 0.031 0.969 29 H 0.100 0.900 30 H 0.263 0.737 31 H 0.393 0.607 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.921 10.380 18.656 24.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.070 0.930 5 C -0.570 4.570 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.339 5.339 14 C 0.363 3.637 15 O -0.394 6.394 16 C -0.129 4.129 17 N -0.069 5.069 18 N -0.099 5.099 19 C -0.108 4.108 20 C -0.235 4.235 21 Br 0.090 6.910 22 C -0.098 4.098 23 C -0.169 4.169 24 C 0.004 3.996 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.226 0.774 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.709 9.977 17.896 23.599 hybrid contribution 1.005 0.097 0.242 1.038 sum -10.704 10.074 18.138 23.347 Atomic orbital electron populations 1.21843 0.98221 0.98062 1.01381 1.21934 0.92724 0.99666 1.02271 1.18857 0.94298 0.89245 0.80711 0.92975 1.21275 0.90701 1.38770 1.06235 0.92025 1.24868 0.98519 0.94864 0.95381 1.69905 1.34945 1.37778 1.09331 0.86412 0.85023 0.77709 0.78070 1.19778 1.20916 1.20910 1.46400 1.13941 1.54771 1.18767 1.16758 0.83479 0.79353 0.84123 1.90826 1.51359 1.59468 1.37701 1.22431 0.91644 1.04001 0.94855 1.73612 1.23357 1.13280 0.96626 1.46991 1.11297 1.39213 1.12373 1.22134 0.90556 1.03349 0.94779 1.21057 0.97021 1.11147 0.94297 1.96620 1.35422 1.97099 1.61896 1.20790 0.99373 1.00299 0.89311 1.22793 0.92518 1.04141 0.97402 1.22617 0.99784 1.01307 0.75912 0.94240 0.95896 0.92967 0.95064 0.88211 0.92673 0.77357 0.88413 0.88333 0.89112 0.87597 0.88027 0.88260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.51 37.16 0.32 -2.89 16 2 C -0.13 -3.20 5.45 -26.73 -0.15 -3.35 16 3 C 0.27 7.06 2.24 -69.08 -0.15 6.91 16 4 H 0.05 1.55 7.58 -51.93 -0.39 1.16 16 5 C -0.53 -14.49 8.73 -34.44 -0.30 -14.79 16 6 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -25.08 11.29 55.43 0.63 -24.45 16 9 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.69 -15.79 5.02 -55.93 -0.28 -16.07 16 14 C 0.58 12.92 6.39 -12.41 -0.08 12.85 16 15 O -0.52 -12.56 12.73 5.30 0.07 -12.50 16 16 C 0.03 0.66 7.12 -82.90 -0.59 0.07 16 17 N -0.24 -4.03 11.92 33.37 0.40 -3.63 16 18 N -0.31 -4.03 4.42 -55.43 -0.25 -4.27 16 19 C 0.02 0.25 7.48 -81.67 -0.61 -0.36 16 20 C -0.14 -2.40 6.68 -39.34 -0.26 -2.67 16 21 Br 0.01 0.09 32.70 -68.01 -2.22 -2.13 16 22 C -0.06 -0.41 6.85 -26.77 -0.18 -0.59 16 23 C -0.13 -0.54 7.16 -25.23 -0.18 -0.72 16 24 C 0.12 0.84 7.77 -2.84 -0.02 0.82 16 25 H 0.04 0.91 5.65 -51.93 -0.29 0.62 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 1.27 7.84 -51.93 -0.41 0.87 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.10 2.74 5.95 -51.93 -0.31 2.43 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.39 8.38 8.26 -40.82 -0.34 8.05 16 32 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.11 0.13 8.14 -51.93 -0.42 -0.29 16 36 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 325.09 15.07 4.90 4.90 Total: -1.00 -32.99 325.09 -8.75 -41.74 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -4.66 Total: 3.36 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -2.31 Total: -2.99 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 0.50 Total: -48.43 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.07 Total: -12.50 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 35 Polarization: 0.09 SS G_CDS: -2.22 Total: -2.13 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.99 -8.75 -41.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897400166.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.932 kcal (2) G-P(sol) polarization free energy of solvation -32.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds