Wall clock time and date at job start Tue Mar 31 2020 23:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21574 * 120.00034 * 359.97438 * 14 13 3 16 16 C 1.47678 * 119.99949 * 179.97438 * 14 13 3 17 17 N 1.31588 * 126.45764 * 359.69179 * 16 14 13 18 18 N 1.29333 * 110.37350 * 179.75387 * 17 16 14 19 19 C 1.35456 * 109.49556 * 0.61472 * 18 17 16 20 20 C 1.35485 * 107.58975 * 359.53182 * 19 18 17 21 21 Br 1.89103 * 127.27810 * 180.11696 * 20 19 18 22 22 C 1.51319 * 110.26944 * 179.41694 * 19 18 17 23 23 C 1.54537 * 104.17954 * 343.48140 * 22 19 18 24 24 C 1.47431 * 139.90282 * 180.37057 * 18 17 16 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 31 31 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 32 32 H 1.08997 * 110.48786 * 102.15297 * 22 19 18 33 33 H 1.09001 * 110.49000 * 224.80681 * 22 19 18 34 34 H 1.09001 * 110.95374 * 267.14918 * 23 22 19 35 35 H 1.08997 * 110.95408 * 143.42860 * 23 22 19 36 36 H 1.09007 * 110.21228 * 316.61695 * 24 18 17 37 37 H 1.08997 * 110.20990 * 78.52158 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3411 2.6326 0.4319 16 6 0.0443 3.3240 2.6291 17 7 0.7773 3.4273 3.7171 18 7 0.1321 4.0702 4.6353 19 6 -1.0938 4.4119 4.1714 20 6 -1.1908 3.9587 2.8984 21 35 -2.6662 4.1359 1.7287 22 6 -1.8699 5.1535 5.2380 23 6 -1.1073 4.8432 6.5458 24 6 0.3120 4.5403 6.0210 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8292 -0.0609 -2.9500 31 1 2.2719 2.1231 1.9979 32 1 -1.8645 6.2250 5.0383 33 1 -2.8924 4.7801 5.2948 34 1 -1.5313 3.9731 7.0472 35 1 -1.1014 5.7086 7.2083 36 1 0.7787 3.7622 6.6251 37 1 0.9199 5.4449 6.0358 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897400166.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:27 Heat of formation + Delta-G solvation = 27.472496 kcal Electronic energy + Delta-G solvation = -21742.376124 eV Core-core repulsion = 18373.961447 eV Total energy + Delta-G solvation = -3368.414678 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.96983 -40.51109 -37.44129 -36.86208 -34.31070 -33.60119 -32.87550 -31.09187 -30.35712 -28.89083 -27.97252 -25.42936 -24.24734 -22.49048 -21.82582 -21.60569 -20.78037 -18.83533 -18.01871 -17.39170 -17.28560 -16.97574 -16.25252 -16.09561 -15.40650 -15.09761 -14.81691 -14.57670 -14.18737 -14.04206 -13.85371 -13.46344 -13.25386 -13.15243 -12.89087 -12.69987 -12.54011 -12.16670 -12.15854 -12.15374 -12.04983 -11.96261 -11.60379 -11.34505 -11.04871 -10.60493 -10.50004 -10.15845 -9.76729 -9.60184 -8.16003 -6.33120 0.45340 0.66436 0.75685 1.39870 1.43614 1.44418 1.56698 2.32631 2.40696 2.54526 3.06106 3.13126 3.45931 3.59032 3.89038 4.00648 4.11796 4.36204 4.48222 4.50281 4.55079 4.57827 4.76082 4.84122 4.94759 5.05897 5.08532 5.14176 5.25869 5.44193 5.49793 5.54097 5.60253 5.79273 5.91217 6.15633 6.71804 6.73416 6.99279 7.30670 7.48293 8.89790 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.016280 B = 0.003837 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.486923 B = 7294.712481 C = 8523.049550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.119 4.119 3 C 0.280 3.720 4 H 0.006 0.994 5 C -0.550 4.550 6 H 0.065 0.935 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.971 3.029 10 H -0.265 1.265 11 H -0.276 1.276 12 H -0.281 1.281 13 N -0.692 5.692 14 C 0.580 3.420 15 O -0.548 6.548 16 C -0.002 4.002 17 N -0.252 5.252 18 N -0.302 5.302 19 C 0.037 3.963 20 C -0.177 4.177 21 Br 0.000 7.000 22 C -0.061 4.061 23 C -0.111 4.111 24 C 0.104 3.896 25 H 0.037 0.963 26 H 0.046 0.954 27 H 0.031 0.969 28 H 0.036 0.964 29 H 0.077 0.923 30 H 0.266 0.734 31 H 0.400 0.600 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.147 0.853 36 H 0.116 0.884 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.767 11.591 22.067 27.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.158 4.158 3 C 0.177 3.823 4 H 0.024 0.976 5 C -0.588 4.588 6 H 0.084 0.916 7 C -0.182 4.182 8 N -0.550 5.550 9 Si 0.796 3.204 10 H -0.189 1.189 11 H -0.202 1.202 12 H -0.207 1.207 13 N -0.341 5.341 14 C 0.364 3.636 15 O -0.425 6.425 16 C -0.164 4.164 17 N -0.087 5.087 18 N -0.091 5.091 19 C -0.092 4.092 20 C -0.268 4.268 21 Br 0.084 6.916 22 C -0.100 4.100 23 C -0.149 4.149 24 C -0.013 4.013 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.235 0.765 32 H 0.137 0.863 33 H 0.130 0.870 34 H 0.118 0.882 35 H 0.165 0.835 36 H 0.134 0.866 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.556 11.200 21.352 26.738 hybrid contribution 0.914 -0.195 -0.688 1.160 sum -10.643 11.005 20.664 25.718 Atomic orbital electron populations 1.21666 0.96828 0.99203 1.00288 1.21778 0.93861 0.98900 1.01261 1.18473 0.93836 0.89282 0.80732 0.97638 1.21553 0.91302 1.39186 1.06763 0.91644 1.25736 1.03358 0.94233 0.94846 1.70042 1.36966 1.38195 1.09798 0.85315 0.79045 0.77943 0.78129 1.18869 1.20152 1.20722 1.46185 1.14744 1.55292 1.17875 1.17153 0.82613 0.78643 0.85213 1.90788 1.51967 1.60425 1.39290 1.21857 0.93566 1.06545 0.94455 1.73467 1.23959 1.14218 0.97050 1.47717 1.10952 1.36982 1.13470 1.22930 0.90974 1.01250 0.94016 1.21225 0.96450 1.12919 0.96164 1.96574 1.35230 1.97133 1.62678 1.21156 0.99606 1.00710 0.88480 1.22911 0.89507 1.06332 0.96189 1.23339 1.02509 1.02560 0.72861 0.94378 0.93473 0.94944 0.94487 0.90489 0.92469 0.76542 0.86282 0.86959 0.88155 0.83464 0.86621 0.86066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.89 8.51 71.98 0.61 -5.28 16 2 C -0.12 -6.22 5.45 30.59 0.17 -6.05 16 3 C 0.28 15.31 2.24 44.24 0.10 15.41 16 4 H 0.01 0.36 7.58 -2.39 -0.02 0.35 16 5 C -0.55 -30.76 8.73 25.60 0.22 -30.54 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.02 1.03 5.29 84.66 0.45 1.48 16 8 N -0.91 -53.28 11.29 21.45 0.24 -53.04 16 9 Si 0.97 43.51 29.54 68.60 2.03 45.53 16 10 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 11 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 13 N -0.69 -33.03 5.02 -449.14 -2.25 -35.29 16 14 C 0.58 26.98 6.39 86.74 0.55 27.53 16 15 O -0.55 -28.03 12.73 -3.95 -0.05 -28.08 16 16 C 0.00 -0.09 7.12 42.47 0.30 0.21 16 17 N -0.25 -8.53 11.92 -48.34 -0.58 -9.10 16 18 N -0.30 -7.18 4.42 -329.27 -1.46 -8.63 16 19 C 0.04 0.87 7.48 41.56 0.31 1.18 16 20 C -0.18 -5.86 6.68 22.42 0.15 -5.71 16 21 Br 0.00 0.01 32.70 -20.37 -0.67 -0.66 16 22 C -0.06 -0.59 6.85 30.57 0.21 -0.38 16 23 C -0.11 -0.31 7.16 31.56 0.23 -0.08 16 24 C 0.10 0.99 7.77 86.65 0.67 1.66 16 25 H 0.04 1.81 5.65 -2.39 -0.01 1.80 16 26 H 0.05 1.98 8.14 -2.39 -0.02 1.97 16 27 H 0.03 1.64 7.84 -2.38 -0.02 1.63 16 28 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.08 4.39 5.95 -2.39 -0.01 4.38 16 30 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 31 H 0.40 17.67 8.26 -92.71 -0.77 16.91 16 32 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.15 -0.66 8.14 -2.39 -0.02 -0.68 16 36 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -76.39 325.09 1.59 -74.81 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.34 Total: 15.03 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 3.98 Total: -0.57 kcal Atomic # 7 Polarization: -102.02 SS G_CDS: -4.04 Total: -106.06 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.05 Total: -28.08 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -0.67 Total: -0.66 kcal Total: -76.39 1.59 -74.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897400166.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.278 kcal (2) G-P(sol) polarization free energy of solvation -76.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds