Wall clock time and date at job start Tue Mar 31 2020 22:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47130 * 2 1 4 4 C 1.46496 * 119.99823 * 270.60121 * 3 2 1 5 5 C 1.50700 * 109.47339 * 269.72623 * 4 3 2 6 6 H 1.07999 * 119.99970 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00364 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00077 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00285 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47036 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46888 * 119.99795 * 9 7 5 12 12 H 1.48497 * 109.47175 * 239.99826 * 9 7 5 13 13 C 1.34773 * 119.99756 * 90.33103 * 3 2 1 14 14 O 1.21281 * 119.99913 * 175.39318 * 13 3 2 15 15 C 1.50693 * 120.00212 * 355.39488 * 13 3 2 16 16 H 1.09001 * 109.47463 * 322.10796 * 15 13 3 17 17 O 1.42905 * 109.47169 * 202.11148 * 15 13 3 18 18 C 1.50699 * 109.47440 * 82.11255 * 15 13 3 19 19 C 1.38264 * 119.99495 * 70.91699 * 18 15 13 20 20 C 1.38218 * 120.01750 * 179.72603 * 19 18 15 21 21 C 1.38240 * 120.01268 * 0.55446 * 20 19 18 22 22 C 1.38301 * 119.98639 * 359.71588 * 21 20 19 23 23 Br 1.89104 * 120.00981 * 180.02562 * 22 21 20 24 24 C 1.38192 * 119.99687 * 251.19190 * 18 15 13 25 25 H 1.09005 * 109.47181 * 300.00691 * 1 2 3 26 26 H 1.09007 * 109.46845 * 59.99765 * 1 2 3 27 27 H 1.08991 * 109.47754 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46976 * 240.00026 * 2 1 3 29 29 H 1.09007 * 109.46845 * 120.00235 * 2 1 3 30 30 H 1.08996 * 109.47496 * 29.72738 * 4 3 2 31 31 H 1.09000 * 109.47325 * 149.73258 * 4 3 2 32 32 H 0.96989 * 120.00371 * 179.97438 * 8 7 5 33 33 H 0.96700 * 114.00172 * 299.99561 * 17 15 13 34 34 H 1.07999 * 119.98884 * 0.02562 * 19 18 15 35 35 H 1.08001 * 119.99478 * 180.27308 * 20 19 18 36 36 H 1.08001 * 120.00696 * 179.70611 * 21 20 19 37 37 H 1.08003 * 120.00043 * 0.02562 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2500 2.0762 -1.2686 5 6 3.6708 1.8465 -1.7152 6 1 4.3348 1.2428 -1.1143 7 6 4.1232 2.4070 -2.8909 8 7 3.3145 3.1417 -3.6229 9 14 5.8842 2.1217 -3.4448 10 1 6.5824 1.2648 -2.4530 11 1 5.8838 1.4471 -4.7677 12 1 6.5861 3.4257 -3.5543 13 6 2.2493 2.0142 1.1672 14 8 2.7322 3.1268 1.1684 15 6 1.9077 1.3397 2.4707 16 1 0.9800 0.7787 2.3574 17 8 1.7452 2.3279 3.4901 18 6 3.0199 0.3987 2.8561 19 6 4.2373 0.9025 3.2755 20 6 5.2559 0.0399 3.6345 21 6 5.0617 -1.3270 3.5634 22 6 3.8460 -1.8313 3.1386 23 35 3.5794 -3.7009 3.0418 24 6 2.8249 -0.9675 2.7848 25 1 -0.3634 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0275 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.5650 1.6914 -2.0241 31 1 2.0797 3.1444 -1.1342 32 1 3.6328 3.5364 -4.4497 33 1 2.5334 2.8661 3.6455 34 1 4.3908 1.9702 3.3272 35 1 6.2052 0.4337 3.9662 36 1 5.8592 -2.0009 3.8394 37 1 1.8755 -1.3608 2.4525 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900326882.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:39 Heat of formation + Delta-G solvation = -56.509595 kcal Electronic energy + Delta-G solvation = -22173.311744 eV Core-core repulsion = 18768.962579 eV Total energy + Delta-G solvation = -3404.349165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.39406 -38.65830 -36.42286 -35.32155 -32.90801 -32.48361 -31.76970 -30.17746 -29.36397 -28.00035 -26.15918 -23.21881 -22.92396 -22.67660 -21.44166 -19.02662 -17.62902 -17.06654 -16.46275 -16.35591 -15.78664 -15.30419 -14.71553 -14.39022 -14.11866 -13.72774 -13.64442 -13.54452 -13.35458 -13.21973 -12.42533 -12.27837 -12.05549 -11.92850 -11.50849 -11.32398 -11.20060 -11.04988 -10.91483 -10.77707 -10.74843 -10.58053 -10.41055 -10.16130 -9.66675 -9.34016 -8.88360 -8.60156 -8.46618 -7.75846 -6.07369 -4.11781 0.93484 1.06428 1.44503 3.12405 3.27411 3.35059 3.39204 3.43825 3.75643 4.39998 4.47341 4.54082 4.60935 4.85729 4.89506 5.05357 5.14490 5.24732 5.27666 5.28820 5.55176 5.57372 5.65691 5.71088 5.93386 6.00111 6.15273 6.17866 6.27754 6.43754 6.60021 6.97315 7.36594 7.45801 7.52464 7.88555 8.19374 8.29439 8.80333 8.96492 9.53181 11.00927 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.011509 B = 0.004274 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.271403 B = 6550.238954 C = 7207.810011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.092 3.908 3 N -0.586 5.586 4 C 0.245 3.755 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.484 3.516 14 O -0.532 6.532 15 C 0.129 3.871 16 H 0.125 0.875 17 O -0.535 6.535 18 C -0.102 4.102 19 C -0.084 4.084 20 C -0.108 4.108 21 C -0.089 4.089 22 C -0.088 4.088 23 Br -0.053 7.053 24 C -0.078 4.078 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.043 0.957 32 H 0.263 0.737 33 H 0.383 0.617 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.085 -13.743 15.759 20.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.032 4.032 3 N -0.318 5.318 4 C 0.126 3.874 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.269 3.731 14 O -0.410 6.410 15 C 0.066 3.934 16 H 0.143 0.857 17 O -0.341 6.341 18 C -0.104 4.104 19 C -0.102 4.102 20 C -0.127 4.127 21 C -0.109 4.109 22 C -0.167 4.167 23 Br 0.033 6.967 24 C -0.098 4.098 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.232 0.768 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.535 -13.996 15.555 20.981 hybrid contribution 1.602 0.415 -0.612 1.765 sum 0.068 -13.581 14.943 20.193 Atomic orbital electron populations 1.22278 0.96527 1.01762 1.02612 1.21725 0.93760 0.84245 1.03421 1.48247 1.62918 1.13026 1.07620 1.19324 0.96592 0.93434 0.78015 1.21427 0.96826 1.31754 1.06201 0.92453 1.24922 0.97785 0.94928 0.96410 1.69934 1.35454 1.33421 1.14552 0.86468 0.84677 0.78056 0.78401 1.19814 1.20924 1.20849 1.20842 0.79759 0.86837 0.85629 1.90683 1.43681 1.19911 1.86712 1.20874 0.97434 0.88057 0.87041 0.85744 1.86572 1.42387 1.49846 1.55247 1.20257 0.96076 0.93824 1.00199 1.21151 0.92156 1.00842 0.96082 1.21140 0.99330 0.92539 0.99685 1.21133 0.95565 0.95933 0.98228 1.21683 0.97464 0.90319 1.07275 1.96710 1.97249 1.05059 1.97706 1.20942 0.98679 0.91955 0.98235 0.92909 0.91680 0.91828 0.89573 0.91278 0.94800 0.93946 0.92752 0.76764 0.84944 0.84759 0.84926 0.84411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.08 37.16 0.37 -1.89 16 2 C 0.09 1.47 5.73 -4.04 -0.02 1.45 16 3 N -0.59 -12.13 2.46 -175.07 -0.43 -12.56 16 4 C 0.25 6.32 5.13 -5.20 -0.03 6.30 16 5 C -0.52 -14.70 9.39 -34.44 -0.32 -15.03 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 9 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 13 C 0.48 9.82 6.77 -10.99 -0.07 9.74 16 14 O -0.53 -12.91 15.98 -13.31 -0.21 -13.12 16 15 C 0.13 1.97 2.88 -29.04 -0.08 1.89 16 16 H 0.13 1.67 5.70 -51.93 -0.30 1.37 16 17 O -0.53 -8.08 13.07 -54.10 -0.71 -8.79 16 18 C -0.10 -1.41 4.63 -104.63 -0.48 -1.89 16 19 C -0.08 -1.11 9.16 -39.58 -0.36 -1.47 16 20 C -0.11 -1.23 10.05 -39.59 -0.40 -1.63 16 21 C -0.09 -0.99 9.79 -39.56 -0.39 -1.38 16 22 C -0.09 -1.05 6.22 -39.52 -0.25 -1.29 16 23 Br -0.05 -0.55 33.70 -68.01 -2.29 -2.85 16 24 C -0.08 -0.97 7.73 -39.56 -0.31 -1.28 16 25 H 0.05 0.65 6.88 -51.93 -0.36 0.29 16 26 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 29 H 0.07 0.95 3.21 -51.92 -0.17 0.78 16 30 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 31 H 0.04 1.24 7.49 -51.93 -0.39 0.85 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.38 5.06 7.42 45.56 0.34 5.40 16 34 H 0.13 1.69 7.19 -52.49 -0.38 1.31 16 35 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.14 1.47 6.87 -52.48 -0.36 1.11 16 LS Contribution 331.80 15.07 5.00 5.00 Total: -1.00 -32.87 331.80 -9.05 -41.92 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -3.68 Total: 4.12 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -2.44 Total: -4.84 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.31 Total: -38.24 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.92 Total: -21.91 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 35 Polarization: -0.55 SS G_CDS: -2.29 Total: -2.85 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.87 -9.05 -41.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900326882.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.587 kcal (2) G-P(sol) polarization free energy of solvation -32.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds