Wall clock time and date at job start Tue Mar 31 2020 22:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47322 * 2 1 4 4 C 1.46501 * 119.99920 * 89.32403 * 3 2 1 5 5 C 1.50698 * 109.46918 * 90.00032 * 4 3 2 6 6 H 1.07998 * 120.00078 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00076 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99665 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00225 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47224 * 90.00021 * 9 7 5 11 11 H 1.48504 * 109.46911 * 210.00010 * 9 7 5 12 12 H 1.48497 * 109.47404 * 329.99968 * 9 7 5 13 13 C 1.34775 * 120.00015 * 269.32599 * 3 2 1 14 14 O 1.21285 * 120.00164 * 185.01840 * 13 3 2 15 15 C 1.50699 * 120.00258 * 5.00996 * 13 3 2 16 16 H 1.09008 * 109.47022 * 37.39733 * 15 13 3 17 17 O 1.42895 * 109.47372 * 157.39238 * 15 13 3 18 18 C 1.50695 * 109.47362 * 277.39850 * 15 13 3 19 19 C 1.38268 * 119.99639 * 108.25405 * 18 15 13 20 20 C 1.38222 * 120.01987 * 180.02562 * 19 18 15 21 21 C 1.38235 * 120.01039 * 359.97438 * 20 19 18 22 22 C 1.38308 * 119.99287 * 359.97438 * 21 20 19 23 23 Br 1.89095 * 120.01445 * 179.97438 * 22 21 20 24 24 C 1.38200 * 119.99581 * 287.97309 * 18 15 13 25 25 H 1.09002 * 109.47074 * 300.00114 * 1 2 3 26 26 H 1.09011 * 109.47080 * 59.99718 * 1 2 3 27 27 H 1.08999 * 109.47752 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46823 * 120.00452 * 2 1 3 29 29 H 1.09002 * 109.47074 * 239.99886 * 2 1 3 30 30 H 1.08999 * 109.46994 * 209.99852 * 4 3 2 31 31 H 1.08990 * 109.47144 * 329.99771 * 4 3 2 32 32 H 0.97005 * 119.99915 * 180.02562 * 8 7 5 33 33 H 0.96700 * 113.99919 * 60.00785 * 17 15 13 34 34 H 1.07997 * 119.99009 * 359.97438 * 19 18 15 35 35 H 1.07993 * 119.99244 * 180.02562 * 20 19 18 36 36 H 1.08000 * 120.00644 * 180.02562 * 21 20 19 37 37 H 1.07999 * 120.00037 * 0.02562 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2484 2.0767 1.2687 5 6 3.6667 1.8416 1.7204 6 1 4.3305 1.2351 1.1221 7 6 4.1174 2.4016 2.8970 8 7 3.3092 3.1406 3.6253 9 14 5.8756 2.1108 3.4566 10 1 6.7531 3.1740 2.9045 11 1 5.9344 2.1413 4.9401 12 1 6.3373 0.7859 2.9701 13 6 2.2559 2.0119 -1.1671 14 8 2.7457 3.1214 -1.1681 15 6 1.9132 1.3385 -2.4710 16 1 0.9864 0.7761 -2.3569 17 8 1.7478 2.3276 -3.4889 18 6 3.0260 0.3994 -2.8591 19 6 2.8365 -0.9678 -2.7783 20 6 3.8570 -1.8297 -3.1336 21 6 5.0675 -1.3250 -3.5706 22 6 5.2572 0.0426 -3.6527 23 35 6.9131 0.7337 -4.2496 24 6 4.2339 0.9048 -3.3014 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 2.0830 3.1454 1.1323 31 1 1.5592 1.6957 2.0221 32 1 3.6263 3.5350 4.4529 33 1 2.5351 2.8671 -3.6448 34 1 1.8911 -1.3625 -2.4365 35 1 3.7084 -2.8975 -3.0707 36 1 5.8647 -1.9984 -3.8486 37 1 4.3804 1.9727 -3.3684 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900326883.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:42 Heat of formation + Delta-G solvation = -56.123124 kcal Electronic energy + Delta-G solvation = -22169.265178 eV Core-core repulsion = 18764.932771 eV Total energy + Delta-G solvation = -3404.332407 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.38815 -38.65271 -36.41068 -35.32660 -32.97098 -32.51618 -31.51043 -30.22363 -29.45965 -27.96695 -26.15188 -23.19803 -23.03513 -22.46754 -21.54563 -19.03311 -17.62987 -17.05954 -16.45819 -16.34488 -15.77386 -15.29633 -14.68465 -14.42245 -14.12011 -13.72810 -13.64495 -13.54019 -13.33268 -13.22367 -12.40048 -12.27951 -12.03997 -11.94557 -11.55967 -11.30586 -11.20225 -11.03279 -10.94448 -10.77474 -10.70159 -10.52471 -10.34756 -10.14955 -9.67697 -9.31273 -8.90619 -8.57430 -8.45301 -7.75638 -6.06567 -4.10981 0.91564 1.09360 1.51696 3.12390 3.29992 3.36246 3.38887 3.43819 3.75664 4.41191 4.48098 4.53161 4.63091 4.83186 4.89499 5.04366 5.10800 5.24536 5.28310 5.32278 5.51381 5.55067 5.68107 5.70375 5.93749 6.01960 6.09988 6.16154 6.25662 6.42385 6.59357 6.97534 7.37146 7.46148 7.52665 7.89253 8.20029 8.29727 8.81138 8.97065 9.53970 11.01626 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.010206 B = 0.004892 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.808253 B = 5721.692919 C = 7233.269091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.092 3.908 3 N -0.587 5.587 4 C 0.246 3.754 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.484 3.516 14 O -0.531 6.531 15 C 0.129 3.871 16 H 0.126 0.874 17 O -0.536 6.536 18 C -0.102 4.102 19 C -0.092 4.092 20 C -0.112 4.112 21 C -0.090 4.090 22 C -0.084 4.084 23 Br -0.051 7.051 24 C -0.071 4.071 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.034 0.966 32 H 0.263 0.737 33 H 0.383 0.617 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.439 -11.735 -16.349 20.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.032 4.032 3 N -0.319 5.319 4 C 0.127 3.873 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.268 3.732 14 O -0.408 6.408 15 C 0.066 3.934 16 H 0.144 0.856 17 O -0.341 6.341 18 C -0.104 4.104 19 C -0.111 4.111 20 C -0.130 4.130 21 C -0.109 4.109 22 C -0.164 4.164 23 Br 0.035 6.965 24 C -0.091 4.091 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.233 0.767 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.722 -11.011 -16.406 19.772 hybrid contribution 1.206 -0.114 0.749 1.424 sum 1.928 -11.125 -15.657 19.303 Atomic orbital electron populations 1.22278 0.96580 1.01677 1.02634 1.21728 0.93712 0.84323 1.03408 1.48244 1.62964 1.13085 1.07612 1.19313 0.96559 0.93428 0.77999 1.21391 0.97000 1.31739 1.06169 0.92510 1.24920 0.97750 0.94921 0.96422 1.69931 1.35515 1.33237 1.14678 0.86529 0.84805 0.78711 0.77603 1.20506 1.21105 1.19906 1.20868 0.79795 0.86851 0.85649 1.90691 1.43301 1.20123 1.86697 1.20895 0.97352 0.88103 0.87056 0.85616 1.86561 1.42453 1.49772 1.55351 1.20271 0.95344 0.94773 0.99985 1.21172 0.99759 0.92203 0.97935 1.21117 0.92673 1.00140 0.99111 1.21132 0.98122 0.93121 0.98570 1.21708 0.92857 0.95450 1.06354 1.96719 1.25110 1.86712 1.88007 1.20916 0.91437 1.00214 0.96533 0.91710 0.92905 0.91898 0.89629 0.91160 0.93975 0.94813 0.92706 0.76726 0.84630 0.84722 0.84937 0.84717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 10.08 37.16 0.37 -1.80 16 2 C 0.09 1.41 5.73 -4.05 -0.02 1.39 16 3 N -0.59 -12.08 2.46 -175.07 -0.43 -12.51 16 4 C 0.25 6.34 5.13 -5.19 -0.03 6.32 16 5 C -0.52 -14.79 9.39 -34.44 -0.32 -15.12 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 9 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.48 9.85 6.78 -10.99 -0.07 9.78 16 14 O -0.53 -13.06 15.98 -13.26 -0.21 -13.28 16 15 C 0.13 1.97 2.88 -29.04 -0.08 1.88 16 16 H 0.13 1.63 5.71 -51.92 -0.30 1.34 16 17 O -0.54 -8.24 13.07 -54.04 -0.71 -8.95 16 18 C -0.10 -1.41 4.65 -104.63 -0.49 -1.90 16 19 C -0.09 -1.03 8.02 -39.58 -0.32 -1.35 16 20 C -0.11 -1.12 10.05 -39.59 -0.40 -1.52 16 21 C -0.09 -1.00 9.79 -39.56 -0.39 -1.38 16 22 C -0.08 -1.11 6.22 -39.51 -0.25 -1.35 16 23 Br -0.05 -0.63 33.70 -68.01 -2.29 -2.92 16 24 C -0.07 -1.03 8.93 -39.55 -0.35 -1.38 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.05 0.63 6.90 -51.92 -0.36 0.27 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 29 H 0.07 0.90 3.19 -51.93 -0.17 0.73 16 30 H 0.04 1.23 7.50 -51.93 -0.39 0.84 16 31 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.38 5.33 7.37 45.56 0.34 5.67 16 34 H 0.14 1.15 6.82 -52.49 -0.36 0.79 16 35 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 36 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 37 H 0.14 1.98 7.14 -52.49 -0.37 1.60 16 LS Contribution 331.73 15.07 5.00 5.00 Total: -1.00 -33.41 331.73 -9.05 -42.46 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -3.68 Total: 3.74 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -2.44 Total: -4.75 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.31 Total: -38.28 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.92 Total: -22.23 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 35 Polarization: -0.63 SS G_CDS: -2.29 Total: -2.92 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.41 -9.05 -42.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900326883.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.664 kcal (2) G-P(sol) polarization free energy of solvation -33.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds