Wall clock time and date at job start Tue Mar 31 2020 22:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47322 * 2 1 4 4 C 1.46501 * 119.99920 * 89.32403 * 3 2 1 5 5 C 1.50698 * 109.46918 * 90.00032 * 4 3 2 6 6 H 1.07998 * 120.00078 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00076 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99665 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00225 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47224 * 90.00021 * 9 7 5 11 11 H 1.48504 * 109.46911 * 210.00010 * 9 7 5 12 12 H 1.48497 * 109.47404 * 329.99968 * 9 7 5 13 13 C 1.34775 * 120.00015 * 269.32599 * 3 2 1 14 14 O 1.21285 * 120.00164 * 185.01840 * 13 3 2 15 15 C 1.50699 * 120.00258 * 5.00996 * 13 3 2 16 16 H 1.09008 * 109.47022 * 37.39733 * 15 13 3 17 17 O 1.42895 * 109.47372 * 157.39238 * 15 13 3 18 18 C 1.50695 * 109.47362 * 277.39850 * 15 13 3 19 19 C 1.38268 * 119.99639 * 108.25405 * 18 15 13 20 20 C 1.38222 * 120.01987 * 180.02562 * 19 18 15 21 21 C 1.38235 * 120.01039 * 359.97438 * 20 19 18 22 22 C 1.38308 * 119.99287 * 359.97438 * 21 20 19 23 23 Br 1.89095 * 120.01445 * 179.97438 * 22 21 20 24 24 C 1.38200 * 119.99581 * 287.97309 * 18 15 13 25 25 H 1.09002 * 109.47074 * 300.00114 * 1 2 3 26 26 H 1.09011 * 109.47080 * 59.99718 * 1 2 3 27 27 H 1.08999 * 109.47752 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46823 * 120.00452 * 2 1 3 29 29 H 1.09002 * 109.47074 * 239.99886 * 2 1 3 30 30 H 1.08999 * 109.46994 * 209.99852 * 4 3 2 31 31 H 1.08990 * 109.47144 * 329.99771 * 4 3 2 32 32 H 0.97005 * 119.99915 * 180.02562 * 8 7 5 33 33 H 0.96700 * 113.99919 * 60.00785 * 17 15 13 34 34 H 1.07997 * 119.99009 * 359.97438 * 19 18 15 35 35 H 1.07993 * 119.99244 * 180.02562 * 20 19 18 36 36 H 1.08000 * 120.00644 * 180.02562 * 21 20 19 37 37 H 1.07999 * 120.00037 * 0.02562 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2484 2.0767 1.2687 5 6 3.6667 1.8416 1.7204 6 1 4.3305 1.2351 1.1221 7 6 4.1174 2.4016 2.8970 8 7 3.3092 3.1406 3.6253 9 14 5.8756 2.1108 3.4566 10 1 6.7531 3.1740 2.9045 11 1 5.9344 2.1413 4.9401 12 1 6.3373 0.7859 2.9701 13 6 2.2559 2.0119 -1.1671 14 8 2.7457 3.1214 -1.1681 15 6 1.9132 1.3385 -2.4710 16 1 0.9864 0.7761 -2.3569 17 8 1.7478 2.3276 -3.4889 18 6 3.0260 0.3994 -2.8591 19 6 2.8365 -0.9678 -2.7783 20 6 3.8570 -1.8297 -3.1336 21 6 5.0675 -1.3250 -3.5706 22 6 5.2572 0.0426 -3.6527 23 35 6.9131 0.7337 -4.2496 24 6 4.2339 0.9048 -3.3014 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 2.0830 3.1454 1.1323 31 1 1.5592 1.6957 2.0221 32 1 3.6263 3.5350 4.4529 33 1 2.5351 2.8671 -3.6448 34 1 1.8911 -1.3625 -2.4365 35 1 3.7084 -2.8975 -3.0707 36 1 5.8647 -1.9984 -3.8486 37 1 4.3804 1.9727 -3.3684 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900326883.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:41 Heat of formation + Delta-G solvation = -77.833695 kcal Electronic energy + Delta-G solvation = -22170.206619 eV Core-core repulsion = 18764.932771 eV Total energy + Delta-G solvation = -3405.273848 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.65392 -39.89198 -37.72897 -36.88662 -34.96940 -33.60002 -32.49933 -31.67871 -30.44263 -29.57584 -27.69566 -24.96096 -24.30994 -23.44411 -22.68894 -20.53133 -18.73436 -18.67061 -18.35724 -17.73391 -16.84379 -16.72465 -16.26315 -15.73970 -15.51006 -15.03659 -14.91668 -14.66646 -14.45045 -14.40113 -14.13360 -13.61234 -13.38986 -13.29504 -13.06296 -12.90470 -12.67242 -12.54760 -12.24658 -12.17221 -12.06517 -11.96347 -11.74156 -11.64082 -11.32485 -10.67860 -10.62602 -9.93812 -9.68484 -9.49680 -8.24970 -6.38853 -0.00352 0.15952 0.57168 1.32983 1.36202 1.45313 1.62608 2.17900 2.37387 2.52052 3.04863 3.33134 3.38915 3.56486 3.76155 3.90953 4.05810 4.15408 4.20873 4.38904 4.40930 4.60122 4.62881 4.79475 4.91488 4.96930 5.03535 5.12012 5.17563 5.24358 5.32717 5.40595 5.54386 5.75108 5.80047 6.03464 6.30802 6.64701 6.72600 7.21468 7.36429 8.82226 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.010206 B = 0.004892 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.808253 B = 5721.692919 C = 7233.269091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.085 3.915 3 N -0.592 5.592 4 C 0.262 3.738 5 C -0.537 4.537 6 H 0.050 0.950 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.961 3.039 10 H -0.283 1.283 11 H -0.272 1.272 12 H -0.262 1.262 13 C 0.473 3.527 14 O -0.588 6.588 15 C 0.146 3.854 16 H 0.156 0.844 17 O -0.541 6.541 18 C -0.121 4.121 19 C -0.090 4.090 20 C -0.101 4.101 21 C -0.089 4.089 22 C -0.101 4.101 23 Br -0.055 7.055 24 C -0.095 4.095 25 H 0.041 0.959 26 H 0.061 0.939 27 H 0.104 0.896 28 H 0.076 0.924 29 H 0.103 0.897 30 H -0.006 1.006 31 H 0.027 0.973 32 H 0.267 0.733 33 H 0.387 0.613 34 H 0.171 0.829 35 H 0.177 0.823 36 H 0.155 0.845 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.382 -15.313 -17.181 23.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.037 4.037 3 N -0.323 5.323 4 C 0.140 3.860 5 C -0.576 4.576 6 H 0.068 0.932 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.785 3.215 10 H -0.209 1.209 11 H -0.197 1.197 12 H -0.186 1.186 13 C 0.261 3.739 14 O -0.469 6.469 15 C 0.084 3.916 16 H 0.174 0.826 17 O -0.347 6.347 18 C -0.123 4.123 19 C -0.108 4.108 20 C -0.119 4.119 21 C -0.108 4.108 22 C -0.181 4.181 23 Br 0.031 6.969 24 C -0.115 4.115 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.123 0.877 28 H 0.094 0.906 29 H 0.121 0.879 30 H 0.012 0.988 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.237 0.763 34 H 0.188 0.812 35 H 0.194 0.806 36 H 0.173 0.827 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.641 -14.637 -17.257 22.637 hybrid contribution 1.216 0.979 0.972 1.839 sum 1.857 -13.658 -16.285 21.335 Atomic orbital electron populations 1.22241 0.94054 1.04199 1.02000 1.22087 0.95764 0.81272 1.04532 1.48260 1.63030 1.15023 1.05992 1.18742 0.95503 0.91320 0.80402 1.21630 0.97964 1.31706 1.06310 0.93218 1.25795 1.02004 0.94548 0.96554 1.70042 1.37496 1.33977 1.15137 0.85518 0.79423 0.78827 0.77720 1.20884 1.19700 1.18620 1.21942 0.78401 0.86334 0.87247 1.90650 1.45742 1.22787 1.87750 1.20858 0.99232 0.87871 0.83655 0.82644 1.86527 1.42981 1.50200 1.55035 1.20212 0.94535 0.95857 1.01706 1.21583 1.01550 0.90804 0.96813 1.21610 0.91369 1.02052 0.96901 1.21538 0.99456 0.92346 0.97504 1.21866 0.92562 0.96433 1.07209 1.96702 1.25109 1.87089 1.88040 1.20909 0.92669 0.99736 0.98194 0.94002 0.91966 0.87696 0.90563 0.87941 0.98755 0.95513 0.92388 0.76322 0.81215 0.80577 0.82712 0.86644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.73 10.08 71.98 0.73 -3.00 16 2 C 0.09 2.45 5.73 86.38 0.49 2.94 16 3 N -0.59 -24.71 2.46 -826.19 -2.03 -26.74 16 4 C 0.26 14.12 5.13 85.63 0.44 14.56 16 5 C -0.54 -31.17 9.39 25.60 0.24 -30.93 16 6 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 7 C 0.01 0.59 5.46 84.66 0.46 1.05 16 8 N -0.93 -56.30 13.29 21.45 0.28 -56.02 16 9 Si 0.96 45.45 29.54 68.60 2.03 47.47 16 10 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 13 C 0.47 19.72 6.78 87.66 0.59 20.31 16 14 O -0.59 -30.66 15.98 14.94 0.24 -30.42 16 15 C 0.15 4.31 2.88 29.10 0.08 4.39 16 16 H 0.16 3.54 5.71 -2.38 -0.01 3.53 16 17 O -0.54 -16.63 13.07 -130.99 -1.71 -18.34 16 18 C -0.12 -3.14 4.65 -19.87 -0.09 -3.23 16 19 C -0.09 -1.61 8.02 22.27 0.18 -1.43 16 20 C -0.10 -1.54 10.05 22.27 0.22 -1.31 16 21 C -0.09 -1.69 9.79 22.29 0.22 -1.47 16 22 C -0.10 -2.55 6.22 22.31 0.14 -2.41 16 23 Br -0.05 -1.34 33.70 -20.37 -0.69 -2.03 16 24 C -0.10 -2.72 8.93 22.29 0.20 -2.53 16 25 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.06 1.28 6.90 -2.38 -0.02 1.27 16 27 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.08 2.35 8.08 -2.39 -0.02 2.33 16 29 H 0.10 2.24 3.19 -2.39 -0.01 2.24 16 30 H -0.01 -0.36 7.50 -2.39 -0.02 -0.37 16 31 H 0.03 1.46 8.07 -2.39 -0.02 1.44 16 32 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 33 H 0.39 11.34 7.37 -74.06 -0.55 10.79 16 34 H 0.17 1.82 6.82 -2.91 -0.02 1.80 16 35 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 36 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 37 H 0.12 3.62 7.14 -2.91 -0.02 3.60 16 Total: -1.00 -77.16 331.73 2.59 -74.57 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.56 Total: 14.57 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 3.91 Total: -3.07 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -1.74 Total: -82.76 kcal Atomic # 8 Polarization: -47.29 SS G_CDS: -1.47 Total: -48.76 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Atomic # 35 Polarization: -1.34 SS G_CDS: -0.69 Total: -2.03 kcal Total: -77.16 2.59 -74.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900326883.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.260 kcal (2) G-P(sol) polarization free energy of solvation -77.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds