Wall clock time and date at job start Tue Mar 31 2020 23:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38786 * 119.61396 * 2 1 4 4 C 1.37656 * 120.06965 * 180.02562 * 3 2 1 5 5 C 1.39338 * 119.95171 * 0.02562 * 4 3 2 6 6 S 1.76072 * 131.73033 * 179.97438 * 5 4 3 7 7 C 1.70647 * 90.82764 * 180.02562 * 6 5 4 8 8 S 1.76206 * 124.23985 * 179.97438 * 7 6 5 9 9 O 1.42101 * 104.27568 * 26.04858 * 8 7 6 10 10 O 1.42096 * 104.27640 * 153.90807 * 8 7 6 11 11 C 1.81404 * 104.44854 * 269.97886 * 8 7 6 12 12 C 1.53003 * 109.46863 * 180.02562 * 11 8 7 13 13 O 1.42900 * 109.46679 * 180.02562 * 12 11 8 14 14 C 1.42901 * 113.99373 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46805 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00354 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99995 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00310 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99996 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47408 * 59.99779 * 19 17 15 21 21 H 1.48502 * 109.47325 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47261 * 299.99914 * 19 17 15 23 23 N 1.27931 * 111.52145 * 0.02562 * 7 6 5 24 24 C 1.34658 * 117.84951 * 359.97438 * 23 7 6 25 25 C 1.36183 * 119.60805 * 180.22718 * 2 1 3 26 26 H 1.09006 * 109.47450 * 89.99835 * 1 2 3 27 27 H 1.09000 * 109.47617 * 209.99759 * 1 2 3 28 28 H 1.09001 * 109.46912 * 330.00062 * 1 2 3 29 29 H 1.08002 * 119.96193 * 359.97438 * 3 2 1 30 30 H 1.07999 * 120.02447 * 180.02562 * 4 3 2 31 31 H 1.09000 * 109.47000 * 299.99974 * 11 8 7 32 32 H 1.08995 * 109.46923 * 60.00015 * 11 8 7 33 33 H 1.08994 * 109.46828 * 299.99814 * 12 11 8 34 34 H 1.09000 * 109.47251 * 59.99763 * 12 11 8 35 35 H 1.08994 * 109.47712 * 299.99477 * 14 13 12 36 36 H 1.09002 * 109.47311 * 60.00058 * 14 13 12 37 37 H 0.96998 * 120.00372 * 180.02562 * 18 17 15 38 38 H 1.08002 * 119.78786 * 359.80656 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1928 1.2066 0.0000 4 6 3.5693 1.2175 -0.0005 5 6 4.2745 0.0158 -0.0016 6 16 6.0010 -0.3299 -0.0031 7 6 5.6901 -2.0078 -0.0044 8 16 6.9418 -3.2480 -0.0070 9 8 8.0622 -2.6163 0.5971 10 8 6.3210 -4.3738 0.5983 11 6 7.2609 -3.5653 -1.7643 12 6 8.3430 -4.6385 -1.9005 13 8 8.5948 -4.8880 -3.2848 14 6 9.5955 -5.8796 -3.5239 15 6 9.7779 -6.0613 -5.0087 16 1 9.1889 -5.4776 -5.7006 17 6 10.6968 -6.9728 -5.4840 18 7 11.4145 -7.6833 -4.6416 19 14 10.9234 -7.1975 -7.3245 20 1 11.3476 -5.9104 -7.9319 21 1 11.9624 -8.2290 -7.5731 22 1 9.6399 -7.6321 -7.9319 23 7 4.4344 -2.2525 -0.0043 24 6 3.5893 -1.2042 -0.0027 25 6 2.1798 -1.1840 -0.0047 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6458 2.1379 -0.0004 30 1 4.1022 2.1569 -0.0001 31 1 6.3448 -3.9108 -2.2433 32 1 7.5976 -2.6464 -2.2441 33 1 9.2592 -4.2934 -1.4214 34 1 8.0059 -5.5573 -1.4206 35 1 10.5375 -5.5601 -3.0783 36 1 9.2846 -6.8245 -3.0781 37 1 12.0613 -8.3242 -4.9759 38 1 1.6299 -2.1136 -0.0052 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905303206.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:18 Heat of formation + Delta-G solvation = -87.124858 kcal Electronic energy + Delta-G solvation = -23464.142525 eV Core-core repulsion = 19717.690045 eV Total energy + Delta-G solvation = -3746.452480 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.059 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.67408 -38.85791 -38.63804 -38.36658 -37.40480 -35.06626 -33.56058 -32.96239 -31.60251 -29.28039 -28.10597 -26.90526 -24.83007 -24.25549 -23.83569 -22.39610 -20.49995 -19.77521 -18.71944 -18.52956 -18.00102 -17.79940 -17.33779 -16.99530 -16.64066 -16.46816 -16.36098 -16.05149 -15.52666 -15.28291 -15.02493 -14.67591 -14.40698 -14.03740 -13.73681 -13.55809 -13.46450 -13.27654 -13.11062 -13.05248 -13.02830 -12.78925 -12.77593 -12.68463 -12.58483 -12.24838 -12.06704 -12.05160 -11.35383 -11.26405 -11.08835 -10.94833 -10.36653 -10.01083 -9.28418 -8.33613 -6.46802 -1.55929 -1.19737 -0.17241 -0.03966 0.28676 0.85388 1.33885 1.40744 1.45373 1.53884 2.25298 2.36086 2.46611 2.68511 3.00392 3.02092 3.10454 3.45932 3.59412 3.65252 3.80331 4.01491 4.08360 4.14063 4.28486 4.38015 4.57425 4.59725 4.82167 4.82286 4.85717 4.87142 4.98652 5.11900 5.19374 5.37588 5.51376 5.59248 5.89978 6.00878 6.39074 6.72523 7.24200 8.78367 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.018772 B = 0.002209 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.230757 B =12672.980164 C =13266.205372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.073 4.073 3 C -0.060 4.060 4 C -0.085 4.085 5 C -0.180 4.180 6 S 0.234 5.766 7 C -0.509 4.509 8 S 2.538 3.462 9 O -0.929 6.929 10 O -0.935 6.935 11 C -0.583 4.583 12 C 0.054 3.946 13 O -0.394 6.394 14 C 0.198 3.802 15 C -0.552 4.552 16 H 0.066 0.934 17 C 0.005 3.995 18 N -0.929 5.929 19 Si 0.986 3.014 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.266 1.266 23 N -0.368 5.368 24 C 0.023 3.977 25 C -0.063 4.063 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.182 0.818 30 H 0.166 0.834 31 H 0.161 0.839 32 H 0.170 0.830 33 H 0.070 0.930 34 H 0.064 0.936 35 H -0.003 1.003 36 H -0.006 1.006 37 H 0.272 0.728 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.992 22.904 10.625 33.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.076 4.076 3 C -0.082 4.082 4 C -0.108 4.108 5 C -0.300 4.300 6 S 0.490 5.510 7 C -0.868 4.868 8 S 2.711 3.289 9 O -0.925 6.925 10 O -0.932 6.932 11 C -0.715 4.715 12 C -0.025 4.025 13 O -0.314 6.314 14 C 0.123 3.877 15 C -0.590 4.590 16 H 0.084 0.916 17 C -0.193 4.193 18 N -0.567 5.567 19 Si 0.808 3.192 20 H -0.189 1.189 21 H -0.201 1.201 22 H -0.190 1.190 23 N -0.085 5.085 24 C -0.101 4.101 25 C -0.085 4.085 26 H 0.105 0.895 27 H 0.092 0.908 28 H 0.112 0.888 29 H 0.200 0.800 30 H 0.183 0.817 31 H 0.179 0.821 32 H 0.188 0.812 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.015 0.985 36 H 0.012 0.988 37 H 0.081 0.919 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -20.721 22.461 11.257 32.567 hybrid contribution -0.586 -0.576 -0.892 1.213 sum -21.307 21.885 10.364 32.255 Atomic orbital electron populations 1.20938 0.87408 1.04701 1.04018 1.19975 0.98623 0.91701 0.97320 1.21754 0.92753 0.99565 0.94137 1.20883 0.94797 0.95249 0.99831 1.24561 0.97447 0.99925 1.08074 1.83705 1.01545 0.96337 1.69424 1.38691 1.10787 1.18007 1.19354 1.04835 0.72756 0.73226 0.78043 1.93606 1.48777 1.76114 1.74053 1.93558 1.75935 1.49653 1.74060 1.30189 1.09572 1.10029 1.21666 1.22150 0.96805 0.96794 0.86755 1.87843 1.60540 1.61111 1.21932 1.20051 0.85318 0.85426 0.96873 1.21335 1.22708 1.23230 0.91679 0.91612 1.25996 0.94438 0.94413 1.04502 1.70058 1.24584 1.25061 1.37045 0.85193 0.78334 0.78414 0.77220 1.18858 1.20065 1.19027 1.66263 1.00774 1.35184 1.06263 1.19872 0.96416 0.86195 1.07666 1.20653 0.88698 1.00666 0.98492 0.89473 0.90790 0.88770 0.80034 0.81663 0.82084 0.81170 0.91141 0.91813 0.98491 0.98792 0.91921 0.83768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.47 9.98 71.23 0.71 0.24 16 2 C -0.07 -0.76 5.83 -20.21 -0.12 -0.88 16 3 C -0.06 -0.46 9.68 22.26 0.22 -0.24 16 4 C -0.08 -1.00 10.07 22.40 0.23 -0.77 16 5 C -0.18 -3.58 6.56 22.94 0.15 -3.43 16 6 S 0.23 5.03 22.82 -56.49 -1.29 3.74 16 7 C -0.51 -13.76 6.98 130.81 0.91 -12.85 16 8 S 2.54 72.93 5.32 -56.49 -0.30 72.63 16 9 O -0.93 -28.82 17.66 -127.65 -2.25 -31.07 16 10 O -0.93 -32.76 17.88 -127.65 -2.28 -35.05 16 11 C -0.58 -16.02 6.35 71.98 0.46 -15.56 16 12 C 0.05 1.97 5.95 71.98 0.43 2.40 16 13 O -0.39 -18.91 10.33 -148.98 -1.54 -20.45 16 14 C 0.20 11.08 5.69 71.24 0.41 11.49 16 15 C -0.55 -32.61 9.43 25.60 0.24 -32.37 16 16 H 0.07 3.80 7.81 -2.91 -0.02 3.77 16 17 C 0.01 0.31 5.46 84.65 0.46 0.77 16 18 N -0.93 -55.62 13.29 21.45 0.28 -55.34 16 19 Si 0.99 44.00 29.54 68.60 2.03 46.03 16 20 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 21 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 23 N -0.37 -10.61 10.48 -192.17 -2.01 -12.63 16 24 C 0.02 0.54 7.00 39.79 0.28 0.82 16 25 C -0.06 -1.11 9.66 22.46 0.22 -0.89 16 26 H 0.09 0.25 8.14 -2.38 -0.02 0.23 16 27 H 0.07 0.32 8.07 -2.39 -0.02 0.30 16 28 H 0.09 0.03 8.08 -2.39 -0.02 0.01 16 29 H 0.18 -0.08 8.06 -2.91 -0.02 -0.10 16 30 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 31 H 0.16 4.01 8.14 -2.39 -0.02 3.99 16 32 H 0.17 3.77 8.14 -2.39 -0.02 3.75 16 33 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 36 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 37 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 38 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -80.48 360.71 -1.70 -82.18 By element: Atomic # 1 Polarization: 0.16 SS G_CDS: 1.08 Total: 1.24 kcal Atomic # 6 Polarization: -55.86 SS G_CDS: 4.59 Total: -51.27 kcal Atomic # 7 Polarization: -66.24 SS G_CDS: -1.73 Total: -67.97 kcal Atomic # 8 Polarization: -80.50 SS G_CDS: -6.08 Total: -86.57 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 77.96 SS G_CDS: -1.59 Total: 76.37 kcal Total: -80.48 -1.70 -82.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905303206.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.948 kcal (2) G-P(sol) polarization free energy of solvation -80.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds