Wall clock time and date at job start Tue Mar 31 2020 23:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35249 * 126.07180 * 2 1 4 4 C 1.40402 * 107.86774 * 180.26818 * 3 2 1 5 5 N 1.40155 * 125.97301 * 179.73982 * 4 3 2 6 6 C 1.34781 * 119.99813 * 359.97438 * 5 4 3 7 7 O 1.21287 * 119.99940 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99877 * 180.02562 * 6 5 4 9 9 C 1.53001 * 115.55115 * 325.66875 * 8 6 5 10 10 C 1.53000 * 117.50203 * 179.97438 * 8 6 5 11 11 C 1.53002 * 60.00256 * 252.51061 * 10 8 6 12 12 H 1.09000 * 117.49995 * 252.51415 * 11 10 8 13 13 Br 1.96597 * 117.50206 * 107.48441 * 11 10 8 14 14 N 1.31217 * 108.05680 * 359.75742 * 4 3 2 15 15 N 1.34967 * 126.07295 * 179.85529 * 2 1 3 16 16 C 1.46507 * 125.97280 * 359.97438 * 15 2 1 17 17 C 1.50697 * 109.47006 * 269.71807 * 16 15 2 18 18 H 1.07991 * 120.00449 * 359.72165 * 17 16 15 19 19 C 1.37885 * 119.99686 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99913 * 359.72095 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.72528 * 19 17 16 22 22 H 1.48493 * 109.47326 * 90.00142 * 21 19 17 23 23 H 1.48506 * 109.46545 * 209.99892 * 21 19 17 24 24 H 1.48498 * 109.47210 * 329.99603 * 21 19 17 25 25 H 1.09007 * 109.47372 * 270.14570 * 1 2 3 26 26 H 1.09001 * 109.47477 * 30.14137 * 1 2 3 27 27 H 1.08995 * 109.47620 * 150.14424 * 1 2 3 28 28 H 1.08004 * 126.06101 * 0.04619 * 3 2 1 29 29 H 0.97006 * 120.00196 * 179.97438 * 5 4 3 30 30 H 1.09008 * 109.47107 * 34.41920 * 9 8 6 31 31 H 1.09006 * 109.47113 * 154.41547 * 9 8 6 32 32 H 1.08994 * 109.47042 * 274.41614 * 9 8 6 33 33 H 1.09007 * 117.49180 * 0.02562 * 10 8 6 34 34 H 1.08995 * 117.50089 * 144.99592 * 10 8 6 35 35 H 1.08998 * 109.47049 * 149.71235 * 16 15 2 36 36 H 1.09001 * 109.46896 * 29.71506 * 16 15 2 37 37 H 0.97000 * 119.99651 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6370 0.6546 -0.0063 5 7 4.7734 1.4749 -0.0134 6 6 4.6366 2.8157 -0.0153 7 8 3.5301 3.3124 -0.0113 8 6 5.8585 3.6978 -0.0237 9 6 7.0649 3.1613 0.7494 10 6 5.6370 5.2117 -0.0260 11 6 6.1353 4.5095 -1.2908 12 1 7.1769 4.6613 -1.5736 13 35 4.8697 4.3218 -2.7835 14 7 3.6337 -0.6576 -0.0046 15 7 2.3016 -1.0909 0.0028 16 6 1.8500 -2.4846 0.0068 17 6 1.7023 -2.9606 1.4290 18 1 1.9271 -2.2935 2.2479 19 6 1.2852 -4.2498 1.6846 20 7 1.0110 -5.0621 0.6874 21 14 1.1095 -4.8423 3.4474 22 1 -0.2682 -4.5660 3.9275 23 1 1.3709 -6.3029 3.5069 24 1 2.0864 -4.1291 4.3090 25 1 -0.3634 0.0026 1.0277 26 1 -0.3634 0.8887 -0.5160 27 1 -0.3634 -0.8912 -0.5115 28 1 1.9719 2.1211 0.0007 29 1 5.6584 1.0776 -0.0171 30 1 7.0983 2.0752 0.6628 31 1 7.9795 3.5870 0.3365 32 1 6.9764 3.4395 1.7995 33 1 4.6074 5.5696 -0.0212 34 1 6.3506 5.8256 0.5235 35 1 2.5820 -3.1052 -0.5100 36 1 0.8888 -2.5565 -0.5021 37 1 0.7172 -5.9689 0.8673 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907190464.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:51 Heat of formation + Delta-G solvation = 50.512271 kcal Electronic energy + Delta-G solvation = -21300.720701 eV Core-core repulsion = 17933.305103 eV Total energy + Delta-G solvation = -3367.415598 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.36190 -41.11042 -38.02144 -36.34823 -35.32708 -33.10235 -32.65097 -31.37686 -29.34919 -28.54861 -27.89239 -25.75088 -24.40801 -23.06701 -21.88282 -21.28324 -20.01113 -18.80442 -17.86937 -17.74655 -17.12686 -16.66167 -16.28834 -15.89220 -15.75376 -15.33319 -14.71419 -14.33351 -14.08449 -13.84422 -13.75359 -13.57293 -13.43257 -13.39829 -13.14494 -12.84840 -12.66877 -12.63421 -12.45731 -12.24984 -12.11221 -11.56851 -11.55851 -11.35487 -10.92707 -10.74731 -10.73525 -10.54448 -9.59591 -9.14819 -8.33396 -6.51173 0.59886 0.85058 1.28683 1.34930 1.38082 1.39066 1.50957 2.06713 2.25269 2.38187 2.55489 2.96373 3.30162 3.41110 3.51693 3.86682 3.88971 4.14182 4.40338 4.43436 4.69530 4.73316 4.78276 4.79747 4.85715 4.87671 4.95214 4.97659 5.00530 5.12772 5.23547 5.24704 5.53053 5.80115 5.93040 6.23765 6.24897 6.60989 6.96692 7.08623 7.19801 8.72711 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.023202 B = 0.002849 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.516300 B = 9825.015194 C =10343.845965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.086 3.914 3 C -0.297 4.297 4 C 0.275 3.725 5 N -0.619 5.619 6 C 0.549 3.451 7 O -0.530 6.530 8 C -0.148 4.148 9 C -0.116 4.116 10 C -0.107 4.107 11 C -0.094 4.094 12 H 0.185 0.815 13 Br -0.141 7.141 14 N -0.358 5.358 15 N -0.341 5.341 16 C 0.275 3.725 17 C -0.553 4.553 18 H 0.049 0.951 19 C 0.023 3.977 20 N -0.918 5.918 21 Si 0.972 3.028 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.275 1.275 25 H 0.084 0.916 26 H 0.104 0.896 27 H 0.068 0.932 28 H 0.166 0.834 29 H 0.421 0.579 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.159 0.841 35 H 0.024 0.976 36 H 0.051 0.949 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.334 22.457 -3.166 25.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.044 4.044 3 C -0.328 4.328 4 C 0.021 3.979 5 N -0.269 5.269 6 C 0.336 3.664 7 O -0.404 6.404 8 C -0.152 4.152 9 C -0.173 4.173 10 C -0.145 4.145 11 C -0.190 4.190 12 H 0.202 0.798 13 Br -0.059 7.059 14 N -0.189 5.189 15 N -0.124 5.124 16 C 0.156 3.844 17 C -0.591 4.591 18 H 0.068 0.932 19 C -0.178 4.178 20 N -0.556 5.556 21 Si 0.796 3.204 22 H -0.190 1.190 23 H -0.199 1.199 24 H -0.200 1.200 25 H 0.103 0.897 26 H 0.123 0.877 27 H 0.087 0.913 28 H 0.183 0.817 29 H 0.260 0.740 30 H 0.082 0.918 31 H 0.123 0.877 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.177 0.823 35 H 0.042 0.958 36 H 0.069 0.931 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.750 21.410 -3.756 24.709 hybrid contribution -0.044 -0.463 0.790 0.917 sum 11.705 20.947 -2.965 24.178 Atomic orbital electron populations 1.20462 0.85402 1.04134 1.03973 1.21740 0.96636 0.86509 0.99544 1.21398 0.89943 0.99822 1.21605 1.19289 0.88739 0.89191 1.00679 1.42526 1.06866 1.05111 1.72405 1.20065 0.90716 0.80875 0.74789 1.90630 1.27654 1.74089 1.48013 1.21796 0.96118 0.94789 1.02519 1.21531 0.94021 1.01480 1.00301 1.23627 1.04924 0.90566 0.95376 1.26131 1.00328 1.06768 0.85780 0.79825 1.97479 1.63014 1.98189 1.47259 1.77171 1.00044 1.09981 1.31688 1.48774 1.01738 1.07496 1.54383 1.19248 0.94873 0.72398 0.97855 1.21424 1.47536 0.98467 0.91684 0.93234 1.25744 0.93891 0.95880 1.02312 1.70006 1.44897 1.07632 1.33103 0.85340 0.78971 0.77569 0.78517 1.18955 1.19872 1.20011 0.89723 0.87714 0.91297 0.81701 0.74008 0.91831 0.87669 0.89846 0.87986 0.82288 0.95817 0.93082 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.81 10.11 71.23 0.72 -2.09 16 2 C 0.09 3.72 6.92 41.38 0.29 4.01 16 3 C -0.30 -12.43 9.52 22.11 0.21 -12.22 16 4 C 0.27 11.42 8.11 133.32 1.08 12.50 16 5 N -0.62 -19.25 5.35 -307.52 -1.64 -20.90 16 6 C 0.55 15.19 6.32 87.66 0.55 15.74 16 7 O -0.53 -18.03 13.06 -3.05 -0.04 -18.07 16 8 C -0.15 -2.41 2.61 -52.93 -0.14 -2.54 16 9 C -0.12 -1.13 9.79 71.98 0.70 -0.42 16 10 C -0.11 -1.34 9.58 30.59 0.29 -1.05 16 11 C -0.09 -1.29 6.62 30.60 0.20 -1.09 16 12 H 0.18 1.18 8.05 -2.39 -0.02 1.16 16 13 Br -0.14 -3.21 32.81 -20.37 -0.67 -3.88 16 14 N -0.36 -17.16 12.59 -54.46 -0.69 -17.84 16 15 N -0.34 -16.87 3.59 -338.44 -1.22 -18.08 16 16 C 0.28 14.78 5.99 85.63 0.51 15.29 16 17 C -0.55 -31.28 9.39 25.60 0.24 -31.04 16 18 H 0.05 2.89 7.81 -2.92 -0.02 2.87 16 19 C 0.02 1.25 5.46 84.66 0.46 1.71 16 20 N -0.92 -52.15 13.29 21.45 0.28 -51.86 16 21 Si 0.97 43.18 29.54 68.60 2.03 45.20 16 22 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 25 H 0.08 2.79 8.14 -2.38 -0.02 2.77 16 26 H 0.10 2.89 8.14 -2.39 -0.02 2.88 16 27 H 0.07 2.42 7.06 -2.39 -0.02 2.40 16 28 H 0.17 6.67 5.92 -2.91 -0.02 6.66 16 29 H 0.42 10.68 7.12 -92.70 -0.66 10.02 16 30 H 0.06 0.71 6.38 -2.38 -0.02 0.70 16 31 H 0.10 0.39 7.90 -2.38 -0.02 0.37 16 32 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.10 1.79 7.67 -2.38 -0.02 1.78 16 34 H 0.16 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.02 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.05 2.72 7.03 -2.39 -0.02 2.70 16 37 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -72.48 335.94 3.63 -68.84 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.45 Total: 17.79 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 5.13 Total: -1.21 kcal Atomic # 7 Polarization: -105.42 SS G_CDS: -3.26 Total: -108.68 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.04 Total: -18.07 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 35 Polarization: -3.21 SS G_CDS: -0.67 Total: -3.88 kcal Total: -72.48 3.63 -68.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907190464.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.357 kcal (2) G-P(sol) polarization free energy of solvation -72.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds