Wall clock time and date at job start Tue Mar 31 2020 23:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35235 * 126.07120 * 2 1 4 4 C 1.40410 * 107.86999 * 179.97438 * 3 2 1 5 5 N 1.40149 * 125.97304 * 179.97438 * 4 3 2 6 6 C 1.34779 * 120.00278 * 0.02562 * 5 4 3 7 7 O 1.21295 * 119.99672 * 0.02562 * 6 5 4 8 8 C 1.50706 * 120.00112 * 180.02562 * 6 5 4 9 9 C 1.52999 * 115.55929 * 325.68576 * 8 6 5 10 10 C 1.53069 * 117.49519 * 111.40021 * 8 6 5 11 11 C 1.53000 * 59.98584 * 107.48317 * 10 8 6 12 12 H 1.09002 * 117.49833 * 107.50105 * 11 10 8 13 13 Br 1.96601 * 117.50084 * 252.49986 * 11 10 8 14 14 N 1.31220 * 108.04773 * 0.23097 * 4 3 2 15 15 N 1.34966 * 126.06857 * 179.97438 * 2 1 3 16 16 C 1.46503 * 125.97549 * 359.97438 * 15 2 1 17 17 C 1.50701 * 109.47089 * 90.00083 * 16 15 2 18 18 H 1.08008 * 119.99955 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00245 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00350 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99728 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.47080 * 90.00202 * 21 19 17 23 23 H 1.48501 * 109.47077 * 210.00029 * 21 19 17 24 24 H 1.48501 * 109.47251 * 329.99978 * 21 19 17 25 25 H 1.08998 * 109.47037 * 90.01950 * 1 2 3 26 26 H 1.09003 * 109.47119 * 210.01735 * 1 2 3 27 27 H 1.08999 * 109.47095 * 330.01985 * 1 2 3 28 28 H 1.08006 * 126.06345 * 359.97438 * 3 2 1 29 29 H 0.97005 * 120.00476 * 180.02562 * 5 4 3 30 30 H 1.08997 * 109.47537 * 274.31139 * 9 8 6 31 31 H 1.09001 * 109.46849 * 34.31899 * 9 8 6 32 32 H 1.09005 * 109.46784 * 154.31358 * 9 8 6 33 33 H 1.09008 * 117.49334 * 359.97438 * 10 8 6 34 34 H 1.08999 * 117.53397 * 214.95293 * 10 8 6 35 35 H 1.08995 * 109.46888 * 209.99830 * 16 15 2 36 36 H 1.08996 * 109.46900 * 330.00429 * 16 15 2 37 37 H 0.96994 * 120.00004 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6371 0.6545 0.0006 5 7 4.7734 1.4748 0.0003 6 6 4.6367 2.8157 -0.0001 7 8 3.5301 3.3124 0.0002 8 6 5.8587 3.6977 -0.0011 9 6 7.0615 3.1600 0.7766 10 6 6.1411 4.5126 -1.2657 11 6 5.6371 5.2116 -0.0015 12 1 6.3483 5.8245 0.5523 13 35 3.7801 5.8573 -0.0001 14 7 3.6336 -0.6577 -0.0041 15 7 2.3016 -1.0910 0.0005 16 6 1.8500 -2.4846 0.0016 17 6 1.6946 -2.9635 -1.4188 18 1 1.9111 -2.2965 -2.2403 19 6 1.2772 -4.2534 -1.6697 20 7 1.1421 -4.6715 -2.9093 21 14 0.9048 -5.4076 -0.2489 22 1 -0.5259 -5.2825 0.1285 23 1 1.1878 -6.8062 -0.6601 24 1 1.7566 -5.0516 0.9143 25 1 -0.3633 -0.0003 -1.0276 26 1 -0.3633 -0.8898 0.5141 27 1 -0.3633 0.8902 0.5135 28 1 1.9719 2.1211 -0.0004 29 1 5.6585 1.0777 0.0004 30 1 6.9691 3.4379 1.8265 31 1 7.0944 2.0740 0.6897 32 1 7.9781 3.5852 0.3676 33 1 5.4431 4.4100 -2.0967 34 1 7.1837 4.6660 -1.5439 35 1 2.5848 -3.1042 0.5156 36 1 0.8915 -2.5555 0.5158 37 1 0.8480 -5.5788 -3.0858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907190465.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:54 Heat of formation + Delta-G solvation = 89.309615 kcal Electronic energy + Delta-G solvation = -21326.309505 eV Core-core repulsion = 17960.576286 eV Total energy + Delta-G solvation = -3365.733219 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.91706 -39.90669 -37.07302 -34.91858 -33.32688 -31.63684 -31.13202 -30.39820 -28.63237 -27.20131 -26.40873 -24.33067 -22.50431 -22.29316 -20.57072 -19.78312 -18.71993 -17.12526 -16.90870 -16.30543 -15.51549 -15.32867 -14.95248 -14.65782 -14.24915 -13.85377 -13.46244 -13.28913 -12.95559 -12.76007 -12.59665 -12.38089 -12.30416 -11.96341 -11.92433 -11.69364 -11.54349 -11.25436 -10.96546 -10.77538 -10.58083 -10.18675 -9.97305 -9.86567 -9.72254 -9.56539 -8.79114 -8.67612 -7.99327 -7.48145 -6.26819 -4.29921 1.51779 2.13056 2.64934 2.76521 3.13981 3.18866 3.22410 3.23184 3.67691 3.72188 4.01990 4.18661 4.20975 4.41551 4.54940 5.01403 5.02509 5.22174 5.25311 5.29246 5.39369 5.47602 5.63303 5.69867 5.83419 6.04167 6.20870 6.34886 6.45206 6.55424 6.60818 6.74146 7.28345 7.39646 7.58049 7.85355 8.24049 8.30905 8.57250 8.78592 9.28365 10.85726 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.025019 B = 0.002799 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.876196 B =10001.760984 C =10572.831292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.094 3.906 3 C -0.286 4.286 4 C 0.270 3.730 5 N -0.626 5.626 6 C 0.543 3.457 7 O -0.482 6.482 8 C -0.142 4.142 9 C -0.117 4.117 10 C -0.127 4.127 11 C -0.101 4.101 12 H 0.143 0.857 13 Br -0.078 7.078 14 N -0.319 5.319 15 N -0.317 5.317 16 C 0.232 3.768 17 C -0.540 4.540 18 H 0.081 0.919 19 C 0.079 3.921 20 N -0.887 5.887 21 Si 0.872 3.128 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.263 1.263 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.162 0.838 29 H 0.408 0.592 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.220 21.079 7.658 24.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.037 4.037 3 C -0.316 4.316 4 C 0.017 3.983 5 N -0.275 5.275 6 C 0.327 3.673 7 O -0.353 6.353 8 C -0.147 4.147 9 C -0.175 4.175 10 C -0.165 4.165 11 C -0.198 4.198 12 H 0.161 0.839 13 Br 0.004 6.996 14 N -0.149 5.149 15 N -0.099 5.099 16 C 0.113 3.887 17 C -0.579 4.579 18 H 0.099 0.901 19 C -0.125 4.125 20 N -0.524 5.524 21 Si 0.698 3.302 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.188 1.188 25 H 0.099 0.901 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.180 0.820 29 H 0.244 0.756 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.398 20.355 7.546 23.655 hybrid contribution 0.315 -0.535 0.522 0.811 sum 9.713 19.819 8.068 23.499 Atomic orbital electron populations 1.20352 0.87821 1.02691 1.03459 1.21065 0.94905 0.87021 1.00693 1.21274 0.89646 0.99872 1.20848 1.18945 0.87250 0.89471 1.02668 1.42463 1.07453 1.04918 1.72666 1.19316 0.89714 0.81307 0.76952 1.90885 1.25719 1.72445 1.46264 1.21602 0.96990 0.91974 1.04120 1.21432 0.94305 1.01674 1.00083 1.23510 1.03686 0.98369 0.90950 1.25665 0.93866 0.94652 1.05579 0.83893 1.97432 1.16254 1.86801 1.99068 1.77253 0.99393 1.08643 1.29607 1.48499 1.01253 1.06988 1.53127 1.19986 0.95266 0.73772 0.99700 1.21177 1.47330 0.98975 0.90387 0.90129 1.24807 0.94483 0.97438 0.95793 1.69872 1.45671 1.18131 1.18684 0.86907 0.79442 0.80980 0.82847 1.19605 1.20490 1.18799 0.90088 0.91144 0.90658 0.82031 0.75592 0.90929 0.91074 0.90861 0.86831 0.86326 0.93247 0.93676 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 10.11 36.01 0.36 -1.06 16 2 C 0.09 1.95 6.92 -82.28 -0.57 1.38 16 3 C -0.29 -5.76 9.52 -39.83 -0.38 -6.14 16 4 C 0.27 5.36 8.11 -154.40 -1.25 4.11 16 5 N -0.63 -9.45 5.35 -11.13 -0.06 -9.51 16 6 C 0.54 7.52 7.36 -10.98 -0.08 7.44 16 7 O -0.48 -7.97 10.31 5.54 0.06 -7.91 16 8 C -0.14 -1.31 2.62 -155.62 -0.41 -1.72 16 9 C -0.12 -0.75 9.79 37.16 0.36 -0.38 16 10 C -0.13 -0.97 9.70 -26.70 -0.26 -1.22 16 11 C -0.10 -0.86 6.69 -26.73 -0.18 -1.04 16 12 H 0.14 0.86 8.14 -51.93 -0.42 0.44 16 13 Br -0.08 -0.93 30.65 -68.01 -2.08 -3.02 16 14 N -0.32 -7.20 12.59 31.44 0.40 -6.81 16 15 N -0.32 -7.33 3.59 -58.33 -0.21 -7.54 16 16 C 0.23 5.58 5.06 -5.19 -0.03 5.55 16 17 C -0.54 -15.15 9.94 -34.44 -0.34 -15.49 16 18 H 0.08 2.56 8.06 -52.48 -0.42 2.14 16 19 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 20 N -0.89 -26.33 13.96 55.43 0.77 -25.56 16 21 Si 0.87 20.09 27.47 -169.99 -4.67 15.42 16 22 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 25 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 26 H 0.07 1.14 7.07 -51.93 -0.37 0.77 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.16 3.17 5.92 -52.48 -0.31 2.86 16 29 H 0.41 5.01 7.12 -40.82 -0.29 4.72 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.45 6.38 -51.93 -0.33 0.12 16 32 H 0.07 0.31 7.90 -51.93 -0.41 -0.10 16 33 H 0.11 1.03 8.14 -51.92 -0.42 0.61 16 34 H 0.12 0.56 8.05 -51.93 -0.42 0.14 16 35 H 0.05 1.20 7.20 -51.93 -0.37 0.82 16 36 H 0.05 1.00 6.47 -51.93 -0.34 0.66 16 37 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 329.14 15.07 4.96 4.96 Total: -1.00 -33.44 329.14 -8.24 -41.69 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -4.54 Total: 4.75 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -2.86 Total: -6.48 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: 0.90 Total: -49.42 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: 0.06 Total: -7.91 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.67 Total: 15.42 kcal Atomic # 35 Polarization: -0.93 SS G_CDS: -2.08 Total: -3.02 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.44 -8.24 -41.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907190465.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.996 kcal (2) G-P(sol) polarization free energy of solvation -33.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds