Wall clock time and date at job start Tue Mar 31 2020 23:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35235 * 126.07120 * 2 1 4 4 C 1.40410 * 107.86999 * 179.97438 * 3 2 1 5 5 N 1.40149 * 125.97304 * 179.97438 * 4 3 2 6 6 C 1.34779 * 120.00278 * 0.02562 * 5 4 3 7 7 O 1.21295 * 119.99672 * 0.02562 * 6 5 4 8 8 C 1.50706 * 120.00112 * 180.02562 * 6 5 4 9 9 C 1.52999 * 115.55929 * 325.68576 * 8 6 5 10 10 C 1.53069 * 117.49519 * 111.40021 * 8 6 5 11 11 C 1.53000 * 59.98584 * 107.48317 * 10 8 6 12 12 H 1.09002 * 117.49833 * 107.50105 * 11 10 8 13 13 Br 1.96601 * 117.50084 * 252.49986 * 11 10 8 14 14 N 1.31220 * 108.04773 * 0.23097 * 4 3 2 15 15 N 1.34966 * 126.06857 * 179.97438 * 2 1 3 16 16 C 1.46503 * 125.97549 * 359.97438 * 15 2 1 17 17 C 1.50701 * 109.47089 * 90.00083 * 16 15 2 18 18 H 1.08008 * 119.99955 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00245 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00350 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99728 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.47080 * 90.00202 * 21 19 17 23 23 H 1.48501 * 109.47077 * 210.00029 * 21 19 17 24 24 H 1.48501 * 109.47251 * 329.99978 * 21 19 17 25 25 H 1.08998 * 109.47037 * 90.01950 * 1 2 3 26 26 H 1.09003 * 109.47119 * 210.01735 * 1 2 3 27 27 H 1.08999 * 109.47095 * 330.01985 * 1 2 3 28 28 H 1.08006 * 126.06345 * 359.97438 * 3 2 1 29 29 H 0.97005 * 120.00476 * 180.02562 * 5 4 3 30 30 H 1.08997 * 109.47537 * 274.31139 * 9 8 6 31 31 H 1.09001 * 109.46849 * 34.31899 * 9 8 6 32 32 H 1.09005 * 109.46784 * 154.31358 * 9 8 6 33 33 H 1.09008 * 117.49334 * 359.97438 * 10 8 6 34 34 H 1.08999 * 117.53397 * 214.95293 * 10 8 6 35 35 H 1.08995 * 109.46888 * 209.99830 * 16 15 2 36 36 H 1.08996 * 109.46900 * 330.00429 * 16 15 2 37 37 H 0.96994 * 120.00004 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6371 0.6545 0.0006 5 7 4.7734 1.4748 0.0003 6 6 4.6367 2.8157 -0.0001 7 8 3.5301 3.3124 0.0002 8 6 5.8587 3.6977 -0.0011 9 6 7.0615 3.1600 0.7766 10 6 6.1411 4.5126 -1.2657 11 6 5.6371 5.2116 -0.0015 12 1 6.3483 5.8245 0.5523 13 35 3.7801 5.8573 -0.0001 14 7 3.6336 -0.6577 -0.0041 15 7 2.3016 -1.0910 0.0005 16 6 1.8500 -2.4846 0.0016 17 6 1.6946 -2.9635 -1.4188 18 1 1.9111 -2.2965 -2.2403 19 6 1.2772 -4.2534 -1.6697 20 7 1.1421 -4.6715 -2.9093 21 14 0.9048 -5.4076 -0.2489 22 1 -0.5259 -5.2825 0.1285 23 1 1.1878 -6.8062 -0.6601 24 1 1.7566 -5.0516 0.9143 25 1 -0.3633 -0.0003 -1.0276 26 1 -0.3633 -0.8898 0.5141 27 1 -0.3633 0.8902 0.5135 28 1 1.9719 2.1211 -0.0004 29 1 5.6585 1.0777 0.0004 30 1 6.9691 3.4379 1.8265 31 1 7.0944 2.0740 0.6897 32 1 7.9781 3.5852 0.3676 33 1 5.4431 4.4100 -2.0967 34 1 7.1837 4.6660 -1.5439 35 1 2.5848 -3.1042 0.5156 36 1 0.8915 -2.5555 0.5158 37 1 0.8480 -5.5788 -3.0858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907190465.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:53 Heat of formation + Delta-G solvation = 67.652220 kcal Electronic energy + Delta-G solvation = -21327.248640 eV Core-core repulsion = 17960.576286 eV Total energy + Delta-G solvation = -3366.672354 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.36605 -41.08262 -37.97700 -36.32035 -35.24932 -33.26961 -32.81243 -31.19157 -29.44373 -28.82257 -27.90381 -25.58378 -24.10896 -23.07551 -21.87968 -21.23102 -20.02093 -19.24206 -17.86293 -17.73633 -17.12524 -16.57920 -16.18652 -15.96210 -15.52960 -15.26246 -14.93497 -14.49506 -14.11391 -13.91771 -13.84274 -13.70120 -13.51124 -13.37533 -13.22081 -12.86200 -12.58671 -12.52945 -12.37151 -12.26744 -11.84982 -11.80619 -11.51040 -11.40947 -10.99532 -10.89766 -10.51856 -9.67063 -9.59406 -9.09901 -8.41022 -6.52294 0.78777 0.85979 1.28947 1.34152 1.34766 1.40392 1.48338 2.08688 2.26172 2.27339 2.55601 2.91309 3.30966 3.45513 3.53828 3.84981 3.90682 4.09260 4.37902 4.45298 4.51087 4.72010 4.76294 4.77376 4.78834 4.83241 4.88929 4.90679 4.98370 5.10388 5.21770 5.24172 5.25214 5.87907 6.00051 6.24774 6.36458 6.51317 6.96763 7.11636 7.12628 8.75744 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.025019 B = 0.002799 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.876196 B =10001.760984 C =10572.831292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.088 3.912 3 C -0.297 4.297 4 C 0.277 3.723 5 N -0.621 5.621 6 C 0.536 3.464 7 O -0.510 6.510 8 C -0.146 4.146 9 C -0.114 4.114 10 C -0.112 4.112 11 C -0.096 4.096 12 H 0.177 0.823 13 Br -0.119 7.119 14 N -0.356 5.356 15 N -0.342 5.342 16 C 0.242 3.758 17 C -0.551 4.551 18 H 0.022 0.978 19 C 0.022 3.978 20 N -0.938 5.938 21 Si 0.951 3.049 22 H -0.250 1.250 23 H -0.278 1.278 24 H -0.244 1.244 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.106 0.894 28 H 0.167 0.833 29 H 0.421 0.579 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.160 0.840 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.481 21.738 9.609 26.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.042 4.042 3 C -0.327 4.327 4 C 0.023 3.977 5 N -0.272 5.272 6 C 0.322 3.678 7 O -0.383 6.383 8 C -0.150 4.150 9 C -0.171 4.171 10 C -0.151 4.151 11 C -0.192 4.192 12 H 0.195 0.805 13 Br -0.038 7.038 14 N -0.187 5.187 15 N -0.125 5.125 16 C 0.122 3.878 17 C -0.589 4.589 18 H 0.041 0.959 19 C -0.178 4.178 20 N -0.576 5.576 21 Si 0.772 3.228 22 H -0.174 1.174 23 H -0.203 1.203 24 H -0.168 1.168 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.125 0.875 28 H 0.184 0.816 29 H 0.259 0.741 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.123 0.877 33 H 0.113 0.887 34 H 0.177 0.823 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.686 21.056 9.500 25.452 hybrid contribution 0.006 -0.589 -0.204 0.623 sum 10.692 20.467 9.297 24.893 Atomic orbital electron populations 1.20496 0.85310 1.04669 1.03729 1.21747 0.96654 0.86490 0.99317 1.21455 0.90009 0.99951 1.21310 1.19312 0.88851 0.89176 1.00350 1.42673 1.06758 1.05142 1.72661 1.20289 0.91113 0.80924 0.75443 1.90869 1.27508 1.72765 1.47161 1.21631 0.95876 0.91285 1.06252 1.21504 0.93976 1.01621 1.00032 1.23698 1.05451 0.96242 0.89661 1.25965 0.91984 0.94368 1.06897 0.80535 1.97431 1.19923 1.87279 1.99120 1.77164 0.99698 1.10057 1.31774 1.48418 1.01902 1.07020 1.55138 1.19764 0.96404 0.74636 0.97012 1.21249 1.47775 0.98729 0.91142 0.95910 1.25838 0.93698 0.99192 0.99081 1.70033 1.46901 1.19016 1.21639 0.85675 0.80490 0.77693 0.78959 1.17443 1.20292 1.16784 0.90514 0.90326 0.87521 0.81596 0.74080 0.90576 0.91312 0.87742 0.88673 0.82259 0.93253 0.91048 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.75 10.11 71.24 0.72 -2.03 16 2 C 0.09 3.66 6.92 41.38 0.29 3.94 16 3 C -0.30 -12.10 9.52 22.11 0.21 -11.89 16 4 C 0.28 11.17 8.11 133.33 1.08 12.25 16 5 N -0.62 -18.52 5.35 -307.51 -1.64 -20.17 16 6 C 0.54 14.41 7.36 87.66 0.64 15.05 16 7 O -0.51 -16.83 10.31 -3.08 -0.03 -16.86 16 8 C -0.15 -2.32 2.62 -52.90 -0.14 -2.46 16 9 C -0.11 -1.05 9.79 71.98 0.70 -0.35 16 10 C -0.11 -1.37 9.70 30.62 0.30 -1.07 16 11 C -0.10 -1.39 6.69 30.60 0.20 -1.18 16 12 H 0.18 1.38 8.14 -2.39 -0.02 1.36 16 13 Br -0.12 -2.80 30.65 -20.37 -0.62 -3.42 16 14 N -0.36 -16.45 12.59 -54.45 -0.69 -17.13 16 15 N -0.34 -16.10 3.59 -338.45 -1.22 -17.31 16 16 C 0.24 11.62 5.06 85.63 0.43 12.06 16 17 C -0.55 -31.87 9.94 25.60 0.25 -31.61 16 18 H 0.02 1.53 8.06 -2.91 -0.02 1.51 16 19 C 0.02 1.22 5.47 84.65 0.46 1.68 16 20 N -0.94 -57.26 13.96 21.45 0.30 -56.96 16 21 Si 0.95 40.88 27.47 68.60 1.88 42.76 16 22 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.24 -9.71 6.54 99.48 0.65 -9.05 16 25 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.08 2.43 7.07 -2.39 -0.02 2.41 16 27 H 0.11 2.77 8.14 -2.39 -0.02 2.76 16 28 H 0.17 6.59 5.92 -2.91 -0.02 6.58 16 29 H 0.42 10.02 7.12 -92.70 -0.66 9.36 16 30 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.69 6.38 -2.39 -0.02 0.67 16 32 H 0.10 0.36 7.90 -2.38 -0.02 0.34 16 33 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.16 0.69 8.05 -2.39 -0.02 0.67 16 35 H 0.05 2.35 7.20 -2.39 -0.02 2.34 16 36 H 0.07 3.04 6.47 -2.39 -0.02 3.02 16 37 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -77.24 329.14 3.54 -73.70 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 0.39 Total: 21.02 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 5.16 Total: -5.62 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -3.25 Total: -111.57 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.03 Total: -16.86 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 1.88 Total: 42.76 kcal Atomic # 35 Polarization: -2.80 SS G_CDS: -0.62 Total: -3.42 kcal Total: -77.24 3.54 -73.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907190465.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.352 kcal (2) G-P(sol) polarization free energy of solvation -77.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds