Wall clock time and date at job start Tue Mar 31 2020 23:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47190 * 2 1 4 4 C 1.34778 * 120.00284 * 272.19721 * 3 2 1 5 5 O 1.21694 * 120.00088 * 185.76954 * 4 3 2 6 6 C 1.46672 * 119.99914 * 5.77019 * 4 3 2 7 7 C 1.37888 * 126.22493 * 187.92585 * 6 4 3 8 8 C 1.39886 * 107.08902 * 179.84632 * 7 6 4 9 9 Br 1.89093 * 126.07171 * 180.16010 * 8 7 6 10 10 C 1.35503 * 107.85217 * 0.42149 * 8 7 6 11 11 N 1.35598 * 108.86016 * 359.73793 * 10 8 7 12 12 H 0.96993 * 125.67741 * 179.97438 * 11 10 8 13 13 C 1.46495 * 119.99815 * 92.19558 * 3 2 1 14 14 C 1.53499 * 114.20949 * 120.00527 * 13 3 2 15 15 N 1.47060 * 87.98693 * 87.51486 * 14 13 3 16 16 C 1.36943 * 136.05938 * 207.08204 * 15 14 13 17 17 H 1.07993 * 119.99642 * 355.81536 * 16 15 14 18 18 C 1.38813 * 120.00054 * 175.81798 * 16 15 14 19 19 N 1.31613 * 119.99781 * 183.74884 * 18 16 15 20 20 Si 1.86796 * 119.99877 * 3.74112 * 18 16 15 21 21 H 1.48506 * 109.47223 * 174.90676 * 20 18 16 22 22 H 1.48508 * 109.47418 * 294.90572 * 20 18 16 23 23 H 1.48500 * 109.47449 * 54.90962 * 20 18 16 24 24 C 1.47068 * 87.88517 * 27.34755 * 15 14 13 25 25 H 1.08993 * 109.47335 * 299.99661 * 1 2 3 26 26 H 1.09003 * 109.47372 * 60.00242 * 1 2 3 27 27 H 1.09007 * 109.46959 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47045 * 240.00414 * 2 1 3 29 29 H 1.08997 * 109.47355 * 120.00183 * 2 1 3 30 30 H 1.07995 * 126.45441 * 0.02562 * 7 6 4 31 31 H 1.08002 * 125.56647 * 179.75949 * 10 8 7 32 32 H 1.08993 * 113.28425 * 346.93527 * 13 3 2 33 33 H 1.09005 * 113.46393 * 332.73584 * 14 13 3 34 34 H 1.09001 * 113.47103 * 202.30178 * 14 13 3 35 35 H 0.96994 * 120.00279 * 4.99815 * 19 18 16 36 36 H 1.08999 * 113.46698 * 87.43560 * 24 15 14 37 37 H 1.09003 * 113.46426 * 217.87260 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2008 2.0315 -1.1663 5 8 2.7046 3.1392 -1.1730 6 6 1.7921 1.4041 -2.4275 7 6 2.0535 1.8781 -3.6957 8 6 1.4869 0.9719 -4.5982 9 35 1.5331 1.1024 -6.4840 10 6 0.8941 -0.0131 -3.8808 11 7 1.0726 0.2382 -2.5604 12 1 0.7471 -0.3119 -1.8308 13 6 2.3083 2.0555 1.2678 14 6 3.7645 2.5175 1.4163 15 7 3.3812 3.7694 0.7465 16 6 4.0146 4.7127 -0.0179 17 1 5.0783 4.6422 -0.1908 18 6 3.2895 5.7596 -0.5703 19 7 3.8836 6.6244 -1.3648 20 14 1.4704 5.9407 -0.1861 21 1 0.9590 7.1961 -0.7925 22 1 0.7285 4.7825 -0.7459 23 1 1.2775 5.9876 1.2856 24 6 2.0198 3.5658 1.2643 25 1 -0.3633 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.5962 2.7779 -3.9452 31 1 0.3661 -0.8601 -4.2935 32 1 1.9164 1.5267 2.1365 33 1 4.4710 1.9172 0.8430 34 1 4.0724 2.6563 2.4527 35 1 4.8090 6.4901 -1.6225 36 1 1.8678 3.9810 2.2606 37 1 1.2398 3.8587 0.5614 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950790390.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:29 Heat of formation + Delta-G solvation = 129.759861 kcal Electronic energy + Delta-G solvation = -23088.316023 eV Core-core repulsion = 19724.336858 eV Total energy + Delta-G solvation = -3363.979165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.74172 -41.19394 -38.24271 -36.99168 -34.36968 -33.18204 -31.73707 -30.78280 -29.92674 -29.16738 -26.95036 -25.41567 -24.24064 -23.12116 -21.94673 -21.08752 -20.49379 -19.36768 -18.58091 -17.48296 -17.26986 -16.33907 -16.27707 -15.79356 -15.59009 -15.35141 -15.10344 -15.03789 -14.42677 -13.98778 -13.80758 -13.72562 -13.64844 -13.16203 -13.06878 -12.77193 -12.61014 -12.40700 -12.30763 -12.10050 -11.87568 -11.20484 -11.09123 -11.01995 -10.95900 -10.36762 -9.89864 -9.52521 -9.23701 -8.69913 -8.39402 -5.12771 0.46324 0.79436 1.31496 1.38240 1.50934 1.65881 1.88659 2.26793 2.48949 2.69185 3.18332 3.46246 3.55948 3.68799 3.83909 4.03346 4.15833 4.19506 4.33118 4.42950 4.43058 4.56943 4.68251 4.73267 4.77812 4.80018 4.84891 4.87315 5.04814 5.29589 5.35316 5.38785 5.55136 5.85361 6.15877 6.33813 6.54695 6.91252 7.52603 7.63680 8.51827 9.17355 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.013579 B = 0.004874 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.438186 B = 5743.351696 C = 7129.739552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.083 3.917 3 N -0.600 5.600 4 C 0.529 3.471 5 O -0.466 6.466 6 C -0.042 4.042 7 C -0.120 4.120 8 C -0.200 4.200 9 Br -0.029 7.029 10 C 0.079 3.921 11 N -0.518 5.518 12 H 0.443 0.557 13 C 0.136 3.864 14 C 0.102 3.898 15 N -0.631 5.631 16 C -0.214 4.214 17 H 0.028 0.972 18 C -0.083 4.083 19 N -0.996 5.996 20 Si 1.129 2.871 21 H -0.325 1.325 22 H -0.290 1.290 23 H -0.269 1.269 24 C 0.073 3.927 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.113 0.887 28 H 0.080 0.920 29 H 0.124 0.876 30 H 0.113 0.887 31 H 0.229 0.771 32 H 0.160 0.840 33 H 0.027 0.973 34 H 0.071 0.929 35 H 0.234 0.766 36 H 0.068 0.932 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.686 -25.895 -0.582 28.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.039 4.039 3 N -0.335 5.335 4 C 0.315 3.685 5 O -0.335 6.335 6 C -0.156 4.156 7 C -0.148 4.148 8 C -0.286 4.286 9 Br 0.055 6.945 10 C -0.062 4.062 11 N -0.127 5.127 12 H 0.297 0.703 13 C 0.031 3.969 14 C -0.025 4.025 15 N -0.359 5.359 16 C -0.342 4.342 17 H 0.046 0.954 18 C -0.272 4.272 19 N -0.646 5.646 20 Si 0.961 3.039 21 H -0.255 1.255 22 H -0.218 1.218 23 H -0.195 1.195 24 C -0.052 4.052 25 H 0.095 0.905 26 H 0.062 0.938 27 H 0.132 0.868 28 H 0.098 0.902 29 H 0.142 0.858 30 H 0.132 0.868 31 H 0.245 0.755 32 H 0.177 0.823 33 H 0.045 0.955 34 H 0.088 0.912 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -13.609 -24.221 -1.401 27.818 hybrid contribution 2.097 -0.274 0.228 2.127 sum -11.512 -24.495 -1.173 27.091 Atomic orbital electron populations 1.22584 0.94504 1.04978 1.03195 1.22212 0.95302 0.80946 1.05397 1.47567 1.67132 1.14696 1.04095 1.18002 0.80433 0.86818 0.83201 1.91574 1.38463 1.18356 1.85118 1.20544 1.07841 0.92584 0.94659 1.21100 1.02725 0.99807 0.91146 1.21095 1.14138 1.02430 0.90907 1.96555 1.98589 1.98680 1.00713 1.22554 1.01182 1.00406 0.82044 1.43515 1.41243 1.19205 1.08775 0.70305 1.22572 0.95531 0.92187 0.86634 1.23045 0.96322 0.86623 0.96471 1.45685 1.07954 1.25469 1.56802 1.19471 0.90369 1.02518 1.21813 0.95416 1.26436 1.08190 0.94846 0.97681 1.71021 1.12889 1.40069 1.40659 0.82971 0.72705 0.72466 0.75761 1.25490 1.21828 1.19475 1.23362 0.89075 0.95348 0.97449 0.90462 0.93791 0.86810 0.90233 0.85784 0.86842 0.75508 0.82283 0.95496 0.91155 0.95696 0.91499 0.94522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.97 8.90 71.98 0.64 -1.33 16 2 C 0.08 1.19 5.63 86.38 0.49 1.68 16 3 N -0.60 -17.03 2.75 -801.35 -2.20 -19.23 16 4 C 0.53 21.01 7.13 86.44 0.62 21.62 16 5 O -0.47 -24.81 8.66 -4.33 -0.04 -24.85 16 6 C -0.04 -1.41 6.54 40.35 0.26 -1.14 16 7 C -0.12 -4.48 10.64 22.59 0.24 -4.24 16 8 C -0.20 -5.58 6.53 22.04 0.14 -5.44 16 9 Br -0.03 -0.73 34.08 -20.37 -0.69 -1.43 16 10 C 0.08 1.48 11.86 83.48 0.99 2.47 16 11 N -0.52 -10.59 4.19 -183.53 -0.77 -11.36 16 12 H 0.44 5.71 3.36 -92.71 -0.31 5.40 16 13 C 0.14 3.94 4.87 45.55 0.22 4.16 16 14 C 0.10 3.82 8.21 83.18 0.68 4.51 16 15 N -0.63 -32.06 2.07 -738.03 -1.53 -33.59 16 16 C -0.21 -13.63 9.07 84.03 0.76 -12.87 16 17 H 0.03 1.96 8.05 -2.91 -0.02 1.94 16 18 C -0.08 -5.52 4.99 84.86 0.42 -5.10 16 19 N -1.00 -72.03 13.70 21.65 0.30 -71.73 16 20 Si 1.13 62.85 23.99 68.60 1.65 64.50 16 21 H -0.32 -18.76 7.11 99.48 0.71 -18.05 16 22 H -0.29 -15.58 6.07 99.48 0.60 -14.97 16 23 H -0.27 -13.22 6.71 99.48 0.67 -12.55 16 24 C 0.07 2.99 4.97 83.27 0.41 3.40 16 25 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.04 0.64 6.34 -2.39 -0.02 0.63 16 27 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 28 H 0.08 1.08 5.32 -2.39 -0.01 1.06 16 29 H 0.12 1.00 8.05 -2.39 -0.02 0.98 16 30 H 0.11 5.11 8.06 -2.91 -0.02 5.09 16 31 H 0.23 1.86 8.06 -2.91 -0.02 1.84 16 32 H 0.16 2.68 8.10 -2.39 -0.02 2.66 16 33 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.23 17.14 8.73 -92.71 -0.81 16.33 16 36 H 0.07 2.47 8.06 -2.39 -0.02 2.45 16 37 H 0.04 1.69 3.51 -2.39 -0.01 1.68 16 Total: -1.00 -94.33 306.87 3.22 -91.11 By element: Atomic # 1 Polarization: -1.76 SS G_CDS: 0.62 Total: -1.14 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 5.88 Total: 7.72 kcal Atomic # 7 Polarization: -131.72 SS G_CDS: -4.20 Total: -135.92 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.04 Total: -24.85 kcal Atomic # 14 Polarization: 62.85 SS G_CDS: 1.65 Total: 64.50 kcal Atomic # 35 Polarization: -0.73 SS G_CDS: -0.69 Total: -1.43 kcal Total: -94.33 3.22 -91.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950790390.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.870 kcal (2) G-P(sol) polarization free energy of solvation -94.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds