Wall clock time and date at job start Tue Mar 31 2020 23:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.00128 * 2 1 4 4 C 1.54328 * 109.88490 * 238.90192 * 2 1 3 5 5 H 1.08996 * 110.87168 * 144.34051 * 4 2 1 6 6 N 1.46504 * 110.71505 * 21.13878 * 4 2 1 7 7 C 1.36938 * 119.99415 * 160.02281 * 6 4 2 8 8 H 1.07994 * 120.00306 * 0.02562 * 7 6 4 9 9 C 1.38813 * 119.99739 * 179.97438 * 7 6 4 10 10 N 1.31625 * 119.99780 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 119.99925 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47268 * 90.00047 * 11 9 7 13 13 H 1.48498 * 109.47247 * 329.99677 * 11 9 7 14 14 H 1.48510 * 109.46903 * 209.99873 * 11 9 7 15 15 C 1.55151 * 102.94139 * 262.77490 * 4 2 1 16 16 C 1.54913 * 101.58379 * 324.49634 * 15 4 2 17 17 N 1.47024 * 109.88585 * 121.09114 * 2 1 3 18 18 C 1.34777 * 125.64904 * 300.44859 * 17 2 1 19 19 O 1.21694 * 120.00170 * 358.09133 * 18 17 2 20 20 C 1.46671 * 119.99904 * 178.09166 * 18 17 2 21 21 C 1.37884 * 126.22336 * 188.06596 * 20 18 17 22 22 C 1.39881 * 107.09245 * 179.97438 * 21 20 18 23 23 Br 1.89102 * 126.07452 * 180.02562 * 22 21 20 24 24 C 1.35508 * 107.85407 * 0.02562 * 22 21 20 25 25 N 1.35601 * 108.85189 * 359.75159 * 24 22 21 26 26 H 0.97000 * 125.67413 * 180.27937 * 25 24 22 27 27 H 1.08999 * 109.46953 * 181.09922 * 1 2 3 28 28 H 1.08998 * 109.46793 * 301.09563 * 1 2 3 29 29 H 1.09002 * 109.46890 * 61.09568 * 1 2 3 30 30 H 0.96999 * 120.00202 * 340.02142 * 6 4 2 31 31 H 0.96995 * 120.00280 * 0.02562 * 10 9 7 32 32 H 1.09002 * 111.00194 * 82.57092 * 15 4 2 33 33 H 1.08996 * 111.00544 * 206.41971 * 15 4 2 34 34 H 1.09003 * 110.36534 * 155.84884 * 16 15 4 35 35 H 1.09001 * 110.36580 * 278.16742 * 16 15 4 36 36 H 1.07999 * 126.45662 * 359.97438 * 21 20 18 37 37 H 1.07996 * 125.57348 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2427 5 1 2.9651 -0.2844 -1.6210 6 7 1.0292 -0.8027 -2.2875 7 6 1.3878 -1.0417 -3.5873 8 1 2.4265 -1.1915 -3.8421 9 6 0.4160 -1.0926 -4.5772 10 7 -0.8501 -0.9115 -4.2663 11 14 0.9050 -1.4194 -6.3501 12 1 0.8891 -2.8820 -6.6065 13 1 2.2707 -0.8891 -6.5927 14 1 -0.0562 -0.7467 -7.2607 15 6 2.3519 -2.1695 -0.6923 16 6 2.8569 -1.8497 0.7369 17 7 2.0301 -0.7140 1.1840 18 6 1.7753 -0.3844 2.4657 19 8 1.1051 0.5992 2.7195 20 6 2.3060 -1.2111 3.5549 21 6 2.0010 -1.0883 4.8939 22 6 2.7258 -2.0735 5.5727 23 35 2.7051 -2.3848 7.4378 24 6 3.4455 -2.7653 4.6563 25 7 3.1949 -2.2540 3.4256 26 1 3.5793 -2.5697 2.5929 27 1 -0.3633 -1.0275 0.0197 28 1 -0.3633 0.5308 0.8800 29 1 -0.3633 0.4967 -0.8997 30 1 0.0963 -0.6685 -2.0585 31 1 -1.1041 -0.7422 -3.3456 32 1 1.4452 -2.7736 -0.6603 33 1 3.1270 -2.6619 -1.2795 34 1 2.7088 -2.7080 1.3924 35 1 3.9092 -1.5667 0.7130 36 1 1.3291 -0.3673 5.3356 37 1 4.1067 -3.5918 4.8705 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986511034.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:53 Heat of formation + Delta-G solvation = 27.390246 kcal Electronic energy + Delta-G solvation = -21675.301674 eV Core-core repulsion = 18306.883430 eV Total energy + Delta-G solvation = -3368.418244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.65994 -40.97376 -38.95064 -36.37105 -33.93193 -33.05207 -32.32588 -31.31380 -30.72149 -29.36692 -26.84644 -25.62943 -24.86726 -22.80953 -21.84471 -21.21289 -20.62217 -19.54444 -18.94663 -17.58394 -17.18761 -17.04482 -16.29463 -16.06109 -15.57101 -15.15152 -15.01132 -14.87475 -14.55181 -14.11707 -13.89183 -13.80627 -13.78799 -13.41364 -13.35449 -12.90213 -12.64586 -12.46635 -12.08522 -12.02321 -11.85910 -11.75944 -11.36302 -11.25769 -11.10438 -10.93617 -10.08888 -9.84822 -9.33765 -9.14659 -8.37980 -5.33973 0.25881 0.76587 1.31843 1.59140 1.62107 1.70626 1.84120 2.09013 2.16079 2.72346 3.26460 3.38886 3.50901 3.69659 3.71867 3.91345 4.03465 4.12725 4.14358 4.16763 4.32685 4.38426 4.46491 4.52115 4.67229 4.77887 4.87595 5.03877 5.07484 5.10051 5.29759 5.33649 5.51042 5.62188 6.21349 6.31680 6.49337 6.89216 7.07297 7.97408 8.08919 9.13289 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.039537 B = 0.002265 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.036062 B =12358.556886 C =12741.987904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.136 3.864 3 H 0.070 0.930 4 C 0.172 3.828 5 H 0.070 0.930 6 N -0.744 5.744 7 C -0.326 4.326 8 H 0.075 0.925 9 C -0.106 4.106 10 N -0.978 5.978 11 Si 1.130 2.870 12 H -0.285 1.285 13 H -0.270 1.270 14 H -0.299 1.299 15 C -0.141 4.141 16 C 0.090 3.910 17 N -0.607 5.607 18 C 0.598 3.402 19 O -0.569 6.569 20 C -0.055 4.055 21 C -0.091 4.091 22 C -0.202 4.202 23 Br -0.023 7.023 24 C 0.090 3.910 25 N -0.520 5.520 26 H 0.437 0.563 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.367 0.633 31 H 0.243 0.757 32 H 0.056 0.944 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.144 0.856 37 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.305 -7.756 22.749 27.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.031 3.969 3 H 0.088 0.912 4 C 0.062 3.938 5 H 0.088 0.912 6 N -0.388 5.388 7 C -0.457 4.457 8 H 0.093 0.907 9 C -0.297 4.297 10 N -0.626 5.626 11 Si 0.955 3.045 12 H -0.212 1.212 13 H -0.195 1.195 14 H -0.226 1.226 15 C -0.182 4.182 16 C -0.033 4.033 17 N -0.340 5.340 18 C 0.390 3.610 19 O -0.448 6.448 20 C -0.168 4.168 21 C -0.119 4.119 22 C -0.288 4.288 23 Br 0.061 6.939 24 C -0.052 4.052 25 N -0.124 5.124 26 H 0.285 0.715 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.203 0.797 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.125 0.875 36 H 0.162 0.838 37 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 13.651 -7.541 21.792 26.798 hybrid contribution -0.203 0.486 0.813 0.969 sum 13.448 -7.055 22.605 27.233 Atomic orbital electron populations 1.21856 0.95729 1.01475 1.01515 1.21613 0.94365 0.95998 0.84892 0.91188 1.21314 0.91968 0.94204 0.86339 0.91247 1.42860 1.05215 1.86680 1.04095 1.20410 0.95058 1.44105 0.86162 0.90736 1.27162 0.93273 1.01011 1.08216 1.70975 1.17663 1.54455 1.19536 0.82589 0.74908 0.76475 0.70547 1.21167 1.19522 1.22597 1.23339 1.01739 0.98788 0.94303 1.22820 0.96131 0.88226 0.96080 1.48468 1.50523 1.30854 1.04180 1.16972 0.79683 0.83752 0.80642 1.90817 1.41777 1.28752 1.83472 1.19949 1.04697 0.97887 0.94306 1.21236 1.00714 0.99394 0.90507 1.21132 1.10058 1.05621 0.91961 1.96623 1.98701 1.95895 1.02685 1.22602 1.00553 1.00099 0.81912 1.42880 1.34288 1.24890 1.10298 0.71483 0.93226 0.92181 0.92423 0.79711 0.94685 0.92479 0.88531 0.88743 0.87502 0.83773 0.75932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.53 7.95 71.98 0.57 -4.95 16 2 C 0.14 4.58 3.47 45.34 0.16 4.74 16 3 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 4 C 0.17 6.11 3.46 46.18 0.16 6.27 16 5 H 0.07 2.44 8.12 -2.39 -0.02 2.42 16 6 N -0.74 -34.96 5.02 -317.33 -1.59 -36.55 16 7 C -0.33 -17.11 9.98 84.03 0.84 -16.27 16 8 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 9 C -0.11 -5.90 5.50 84.86 0.47 -5.43 16 10 N -0.98 -60.12 13.70 21.65 0.30 -59.82 16 11 Si 1.13 50.05 29.92 68.60 2.05 52.11 16 12 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 13 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 14 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 15 C -0.14 -3.89 6.77 31.99 0.22 -3.67 16 16 C 0.09 1.74 5.46 86.86 0.47 2.21 16 17 N -0.61 -16.85 3.08 -792.70 -2.44 -19.30 16 18 C 0.60 18.15 7.58 86.45 0.66 18.81 16 19 O -0.57 -21.74 15.87 -4.33 -0.07 -21.81 16 20 C -0.06 -1.29 6.84 40.35 0.28 -1.01 16 21 C -0.09 -2.13 10.64 22.58 0.24 -1.89 16 22 C -0.20 -3.66 6.53 22.04 0.14 -3.51 16 23 Br -0.02 -0.37 34.08 -20.37 -0.69 -1.07 16 24 C 0.09 1.09 11.86 83.48 0.99 2.08 16 25 N -0.52 -7.46 5.39 -183.54 -0.99 -8.44 16 26 H 0.44 3.96 5.21 -92.71 -0.48 3.48 16 27 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 28 H 0.06 2.28 6.82 -2.39 -0.02 2.27 16 29 H 0.06 2.36 6.67 -2.39 -0.02 2.35 16 30 H 0.37 18.36 3.76 -92.71 -0.35 18.02 16 31 H 0.24 14.94 6.77 -92.71 -0.63 14.31 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.09 1.32 5.53 -2.39 -0.01 1.30 16 35 H 0.11 1.43 8.11 -2.39 -0.02 1.41 16 36 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 37 H 0.22 0.75 8.06 -2.91 -0.02 0.73 16 Total: -1.00 -72.09 321.87 2.19 -69.90 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 0.43 Total: 27.62 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 5.19 Total: -2.64 kcal Atomic # 7 Polarization: -119.39 SS G_CDS: -4.73 Total: -124.12 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.07 Total: -21.81 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 2.05 Total: 52.11 kcal Atomic # 35 Polarization: -0.37 SS G_CDS: -0.69 Total: -1.07 kcal Total: -72.09 2.19 -69.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986511034.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.291 kcal (2) G-P(sol) polarization free energy of solvation -72.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds