Wall clock time and date at job start Tue Mar 31 2020 23:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 110.00136 * 2 1 4 4 C 1.54329 * 109.87769 * 238.90591 * 2 1 3 5 5 H 1.08997 * 110.71656 * 144.23851 * 4 2 1 6 6 N 1.46499 * 110.71993 * 21.14166 * 4 2 1 7 7 C 1.36941 * 119.99848 * 157.44415 * 6 4 2 8 8 H 1.07998 * 119.99936 * 359.97438 * 7 6 4 9 9 C 1.38814 * 119.99989 * 180.02562 * 7 6 4 10 10 N 1.31615 * 120.00001 * 179.97438 * 9 7 6 11 11 Si 1.86794 * 119.99848 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.47020 * 270.00074 * 11 9 7 13 13 H 1.48497 * 109.47590 * 30.00206 * 11 9 7 14 14 H 1.48498 * 109.47036 * 150.00361 * 11 9 7 15 15 C 1.55157 * 103.10025 * 262.68753 * 4 2 1 16 16 C 1.54905 * 101.58515 * 324.58932 * 15 4 2 17 17 N 1.47318 * 109.84914 * 121.30423 * 2 1 3 18 18 C 1.34769 * 125.61650 * 300.48816 * 17 2 1 19 19 O 1.21626 * 120.00128 * 358.07724 * 18 17 2 20 20 C 1.47264 * 120.00310 * 178.07905 * 18 17 2 21 21 C 1.36748 * 126.93767 * 187.79062 * 20 18 17 22 22 N 1.34732 * 108.40868 * 179.83667 * 21 20 18 23 23 H 0.97000 * 124.85442 * 180.13470 * 22 21 20 24 24 C 1.36465 * 110.29332 * 0.44011 * 22 21 20 25 25 Br 1.89099 * 125.57955 * 179.73432 * 24 22 21 26 26 C 1.34582 * 108.83557 * 359.72814 * 24 22 21 27 27 H 1.09000 * 109.47192 * 181.09253 * 1 2 3 28 28 H 1.09002 * 109.46551 * 301.09458 * 1 2 3 29 29 H 1.08999 * 109.47038 * 61.08887 * 1 2 3 30 30 H 0.96996 * 120.00363 * 337.43351 * 6 4 2 31 31 H 0.97001 * 120.00034 * 179.97438 * 10 9 7 32 32 H 1.08993 * 111.00391 * 82.66609 * 15 4 2 33 33 H 1.09009 * 111.00034 * 206.47558 * 15 4 2 34 34 H 1.08989 * 110.36903 * 155.85145 * 16 15 4 35 35 H 1.09004 * 110.36840 * 278.17444 * 16 15 4 36 36 H 1.07999 * 125.79445 * 359.97438 * 21 20 18 37 37 H 1.08002 * 126.83152 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0548 -0.7495 -1.2428 5 1 2.9639 -0.2813 -1.6201 6 7 1.0292 -0.8025 -2.2875 7 6 1.3923 -0.9888 -3.5947 8 1 2.4348 -1.0963 -3.8554 9 6 0.4206 -1.0385 -4.5847 10 7 0.7696 -1.2171 -5.8411 11 14 -1.3825 -0.8518 -4.1338 12 1 -1.9616 -2.1886 -3.8453 13 1 -1.5054 0.0108 -2.9313 14 1 -2.1141 -0.2294 -5.2663 15 6 2.3553 -2.1701 -0.6959 16 6 2.8596 -1.8527 0.7339 17 7 2.0303 -0.7200 1.1839 18 6 1.7739 -0.3949 2.4665 19 8 1.1038 0.5872 2.7227 20 6 2.3052 -1.2288 3.5578 21 6 2.0155 -1.1213 4.8899 22 7 2.7033 -2.0714 5.5529 23 1 2.6718 -2.2108 6.5124 24 6 3.4557 -2.8053 4.6826 25 35 4.5912 -4.2429 5.1513 26 6 3.2571 -2.3386 3.4360 27 1 -0.3633 -1.0275 0.0196 28 1 -0.3632 0.5308 0.8801 29 1 -0.3633 0.4968 -0.8996 30 1 0.0929 -0.7057 -2.0534 31 1 0.0906 -1.2521 -6.5329 32 1 1.4501 -2.7765 -0.6653 33 1 3.1311 -2.6595 -1.2849 34 1 2.7138 -2.7128 1.3873 35 1 3.9113 -1.5670 0.7105 36 1 1.3470 -0.3991 5.3347 37 1 3.7089 -2.7072 2.5270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986569351.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:08 Heat of formation + Delta-G solvation = 51.383109 kcal Electronic energy + Delta-G solvation = -21708.594130 eV Core-core repulsion = 18341.216295 eV Total energy + Delta-G solvation = -3367.377836 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.55074 -39.68125 -37.37199 -34.33969 -32.21893 -32.16270 -31.19571 -30.68151 -29.25453 -28.47020 -25.50264 -24.07593 -22.88217 -21.72368 -20.95417 -19.28836 -19.05601 -18.16974 -17.86160 -16.20820 -15.81145 -15.30940 -15.01361 -14.43620 -14.25786 -14.09384 -13.76130 -13.64257 -13.27825 -12.87428 -12.64464 -12.53244 -12.07466 -11.82160 -11.49598 -11.37344 -11.34027 -11.09696 -10.93621 -10.83873 -10.52260 -10.26602 -10.03491 -9.72489 -9.52837 -9.24611 -8.94703 -8.70245 -8.33974 -7.30939 -5.80062 -3.16431 0.89969 1.50739 1.81646 2.79416 3.25781 3.36372 3.39583 3.44938 3.53187 4.56722 4.65379 4.68968 4.98416 5.00331 5.11031 5.24229 5.25907 5.46079 5.51604 5.55417 5.61710 5.74933 5.91066 5.97914 6.08321 6.15857 6.23008 6.32403 6.44232 6.55065 6.62944 6.68373 6.84307 6.89742 7.78864 7.95888 8.38985 8.41004 9.16756 9.89031 10.08137 11.37955 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.021716 B = 0.002802 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.049908 B = 9989.140408 C =10862.035822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.128 3.872 3 H 0.076 0.924 4 C 0.179 3.821 5 H 0.073 0.927 6 N -0.741 5.741 7 C -0.247 4.247 8 H 0.092 0.908 9 C 0.008 3.992 10 N -0.931 5.931 11 Si 0.878 3.122 12 H -0.283 1.283 13 H -0.275 1.275 14 H -0.290 1.290 15 C -0.154 4.154 16 C 0.087 3.913 17 N -0.602 5.602 18 C 0.603 3.397 19 O -0.553 6.553 20 C -0.217 4.217 21 C 0.096 3.904 22 N -0.540 5.540 23 H 0.421 0.579 24 C -0.006 4.006 25 Br 0.004 6.996 26 C -0.124 4.124 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.368 0.632 31 H 0.260 0.740 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.187 0.813 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.890 -5.997 27.552 29.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.025 3.975 3 H 0.094 0.906 4 C 0.067 3.933 5 H 0.091 0.909 6 N -0.386 5.386 7 C -0.377 4.377 8 H 0.110 0.890 9 C -0.188 4.188 10 N -0.579 5.579 11 Si 0.709 3.291 12 H -0.210 1.210 13 H -0.201 1.201 14 H -0.216 1.216 15 C -0.195 4.195 16 C -0.036 4.036 17 N -0.334 5.334 18 C 0.393 3.607 19 O -0.433 6.433 20 C -0.228 4.228 21 C -0.042 4.042 22 N -0.137 5.137 23 H 0.259 0.741 24 C -0.193 4.193 25 Br 0.087 6.913 26 C -0.151 4.151 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.204 0.796 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.204 0.796 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 8.066 -6.057 27.801 29.575 hybrid contribution -1.514 0.185 0.547 1.621 sum 6.552 -5.873 28.348 29.682 Atomic orbital electron populations 1.22082 0.95195 1.02208 1.02679 1.21888 0.94923 0.96100 0.84636 0.90600 1.21161 0.92970 0.92409 0.86731 0.90892 1.42973 1.03857 1.87993 1.03743 1.19073 0.95075 1.42100 0.81422 0.89024 1.24645 0.97337 1.01711 0.95111 1.69691 1.32600 1.56362 0.99218 0.86662 0.86944 0.78042 0.77499 1.20980 1.20118 1.21597 1.23533 1.01936 1.00823 0.93210 1.22812 0.94604 0.89131 0.97033 1.48375 1.50032 1.30383 1.04650 1.16849 0.79522 0.83601 0.80682 1.90760 1.41021 1.28089 1.83410 1.20394 1.06755 1.02391 0.93260 1.21967 0.97442 0.93157 0.91648 1.41599 1.35640 1.26493 1.09932 0.74132 1.21886 1.04838 1.00598 0.91934 1.96795 1.61344 1.39677 1.93474 1.22728 0.99954 0.96665 0.95716 0.92615 0.91657 0.90851 0.79608 0.92981 0.90775 0.90091 0.90023 0.91342 0.79611 0.81322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 7.94 37.16 0.30 -2.61 16 2 C 0.13 2.19 3.49 -66.78 -0.23 1.96 16 3 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 4 C 0.18 3.30 3.46 -66.09 -0.23 3.07 16 5 H 0.07 1.36 8.11 -51.93 -0.42 0.94 16 6 N -0.74 -16.92 4.78 -51.65 -0.25 -17.16 16 7 C -0.25 -6.73 10.45 -15.06 -0.16 -6.88 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 9 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 10 N -0.93 -28.75 13.97 55.49 0.78 -27.97 16 11 Si 0.88 21.82 27.73 -169.99 -4.71 17.10 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.43 6.45 56.52 0.36 -6.07 16 14 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 15 C -0.15 -2.41 6.77 -24.58 -0.17 -2.58 16 16 C 0.09 1.11 5.33 -2.53 -0.01 1.10 16 17 N -0.60 -9.14 3.09 -164.11 -0.51 -9.64 16 18 C 0.60 9.36 7.60 -12.60 -0.10 9.26 16 19 O -0.55 -10.10 15.90 5.25 0.08 -10.02 16 20 C -0.22 -2.65 6.20 -103.35 -0.64 -3.29 16 21 C 0.10 0.89 11.70 -16.82 -0.20 0.69 16 22 N -0.54 -3.91 5.91 -11.27 -0.07 -3.98 16 23 H 0.42 1.70 8.96 -40.82 -0.37 1.34 16 24 C -0.01 -0.05 7.61 -16.78 -0.13 -0.18 16 25 Br 0.00 0.03 34.08 -68.01 -2.32 -2.29 16 26 C -0.12 -1.29 9.21 -37.46 -0.35 -1.64 16 27 H 0.05 0.99 8.06 -51.93 -0.42 0.57 16 28 H 0.06 1.16 6.83 -51.93 -0.35 0.81 16 29 H 0.07 1.38 6.65 -51.93 -0.35 1.04 16 30 H 0.37 8.35 2.85 -40.82 -0.12 8.23 16 31 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 34 H 0.08 0.91 5.16 -51.94 -0.27 0.64 16 35 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 36 H 0.19 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.17 1.60 5.09 -52.49 -0.27 1.33 16 LS Contribution 320.02 15.07 4.82 4.82 Total: -1.00 -32.96 320.02 -8.44 -41.40 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -4.26 Total: 8.69 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -2.01 Total: -0.96 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: -0.05 Total: -58.76 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.10 kcal Atomic # 35 Polarization: 0.03 SS G_CDS: -2.32 Total: -2.29 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.96 -8.44 -41.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986569351.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.787 kcal (2) G-P(sol) polarization free energy of solvation -32.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds