Wall clock time and date at job start Tue Mar 31 2020 23:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 110.00136 * 2 1 4 4 C 1.54329 * 109.87769 * 238.90591 * 2 1 3 5 5 H 1.08997 * 110.71656 * 144.23851 * 4 2 1 6 6 N 1.46499 * 110.71993 * 21.14166 * 4 2 1 7 7 C 1.36941 * 119.99848 * 157.44415 * 6 4 2 8 8 H 1.07998 * 119.99936 * 359.97438 * 7 6 4 9 9 C 1.38814 * 119.99989 * 180.02562 * 7 6 4 10 10 N 1.31615 * 120.00001 * 179.97438 * 9 7 6 11 11 Si 1.86794 * 119.99848 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.47020 * 270.00074 * 11 9 7 13 13 H 1.48497 * 109.47590 * 30.00206 * 11 9 7 14 14 H 1.48498 * 109.47036 * 150.00361 * 11 9 7 15 15 C 1.55157 * 103.10025 * 262.68753 * 4 2 1 16 16 C 1.54905 * 101.58515 * 324.58932 * 15 4 2 17 17 N 1.47318 * 109.84914 * 121.30423 * 2 1 3 18 18 C 1.34769 * 125.61650 * 300.48816 * 17 2 1 19 19 O 1.21626 * 120.00128 * 358.07724 * 18 17 2 20 20 C 1.47264 * 120.00310 * 178.07905 * 18 17 2 21 21 C 1.36748 * 126.93767 * 187.79062 * 20 18 17 22 22 N 1.34732 * 108.40868 * 179.83667 * 21 20 18 23 23 H 0.97000 * 124.85442 * 180.13470 * 22 21 20 24 24 C 1.36465 * 110.29332 * 0.44011 * 22 21 20 25 25 Br 1.89099 * 125.57955 * 179.73432 * 24 22 21 26 26 C 1.34582 * 108.83557 * 359.72814 * 24 22 21 27 27 H 1.09000 * 109.47192 * 181.09253 * 1 2 3 28 28 H 1.09002 * 109.46551 * 301.09458 * 1 2 3 29 29 H 1.08999 * 109.47038 * 61.08887 * 1 2 3 30 30 H 0.96996 * 120.00363 * 337.43351 * 6 4 2 31 31 H 0.97001 * 120.00034 * 179.97438 * 10 9 7 32 32 H 1.08993 * 111.00391 * 82.66609 * 15 4 2 33 33 H 1.09009 * 111.00034 * 206.47558 * 15 4 2 34 34 H 1.08989 * 110.36903 * 155.85145 * 16 15 4 35 35 H 1.09004 * 110.36840 * 278.17444 * 16 15 4 36 36 H 1.07999 * 125.79445 * 359.97438 * 21 20 18 37 37 H 1.08002 * 126.83152 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0548 -0.7495 -1.2428 5 1 2.9639 -0.2813 -1.6201 6 7 1.0292 -0.8025 -2.2875 7 6 1.3923 -0.9888 -3.5947 8 1 2.4348 -1.0963 -3.8554 9 6 0.4206 -1.0385 -4.5847 10 7 0.7696 -1.2171 -5.8411 11 14 -1.3825 -0.8518 -4.1338 12 1 -1.9616 -2.1886 -3.8453 13 1 -1.5054 0.0108 -2.9313 14 1 -2.1141 -0.2294 -5.2663 15 6 2.3553 -2.1701 -0.6959 16 6 2.8596 -1.8527 0.7339 17 7 2.0303 -0.7200 1.1839 18 6 1.7739 -0.3949 2.4665 19 8 1.1038 0.5872 2.7227 20 6 2.3052 -1.2288 3.5578 21 6 2.0155 -1.1213 4.8899 22 7 2.7033 -2.0714 5.5529 23 1 2.6718 -2.2108 6.5124 24 6 3.4557 -2.8053 4.6826 25 35 4.5912 -4.2429 5.1513 26 6 3.2571 -2.3386 3.4360 27 1 -0.3633 -1.0275 0.0196 28 1 -0.3632 0.5308 0.8801 29 1 -0.3633 0.4968 -0.8996 30 1 0.0929 -0.7057 -2.0534 31 1 0.0906 -1.2521 -6.5329 32 1 1.4501 -2.7765 -0.6653 33 1 3.1311 -2.6595 -1.2849 34 1 2.7138 -2.7128 1.3873 35 1 3.9113 -1.5670 0.7105 36 1 1.3470 -0.3991 5.3347 37 1 3.7089 -2.7072 2.5270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986569351.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:07 Heat of formation + Delta-G solvation = 29.232444 kcal Electronic energy + Delta-G solvation = -21709.554655 eV Core-core repulsion = 18341.216295 eV Total energy + Delta-G solvation = -3368.338360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.32401 -40.89465 -38.70962 -36.03598 -33.80952 -32.82152 -32.57497 -31.90737 -30.72432 -29.24190 -26.96255 -25.48367 -24.45607 -22.85116 -21.78238 -20.64105 -19.97338 -19.85934 -19.13909 -17.35004 -17.14955 -16.53020 -16.34862 -15.85173 -15.54055 -15.15717 -15.03899 -14.71614 -14.61462 -14.32987 -13.92926 -13.72293 -13.39512 -13.20441 -13.09561 -12.96225 -12.79333 -12.40120 -12.19607 -12.00282 -11.87444 -11.70149 -11.57871 -11.48045 -10.95493 -10.87725 -10.02838 -9.67930 -9.31458 -9.28367 -8.00562 -5.33730 0.23930 0.68895 1.03574 1.38646 1.39796 1.46733 1.92550 2.35444 2.47749 2.48925 3.29071 3.56897 3.58118 3.83977 4.00415 4.03184 4.16500 4.25255 4.35480 4.37329 4.42873 4.54005 4.62750 4.68619 4.82365 4.90984 5.04705 5.16877 5.25482 5.32955 5.39181 5.48274 5.63703 5.80366 6.23580 6.29506 6.63640 7.08650 7.24501 7.84187 8.02749 9.20642 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.021716 B = 0.002802 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.049908 B = 9989.140408 C =10862.035822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.134 3.866 3 H 0.070 0.930 4 C 0.169 3.831 5 H 0.069 0.931 6 N -0.745 5.745 7 C -0.225 4.225 8 H 0.066 0.934 9 C -0.058 4.058 10 N -0.981 5.981 11 Si 0.939 3.061 12 H -0.278 1.278 13 H -0.254 1.254 14 H -0.296 1.296 15 C -0.146 4.146 16 C 0.096 3.904 17 N -0.604 5.604 18 C 0.600 3.400 19 O -0.589 6.589 20 C -0.252 4.252 21 C 0.115 3.885 22 N -0.522 5.522 23 H 0.438 0.562 24 C -0.005 4.005 25 Br 0.020 6.980 26 C -0.133 4.133 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.369 0.631 31 H 0.257 0.743 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.205 0.795 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.091 -6.883 30.672 32.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.029 3.971 3 H 0.088 0.912 4 C 0.060 3.940 5 H 0.087 0.913 6 N -0.391 5.391 7 C -0.356 4.356 8 H 0.084 0.916 9 C -0.250 4.250 10 N -0.632 5.632 11 Si 0.767 3.233 12 H -0.204 1.204 13 H -0.179 1.179 14 H -0.223 1.223 15 C -0.187 4.187 16 C -0.025 4.025 17 N -0.336 5.336 18 C 0.393 3.607 19 O -0.472 6.472 20 C -0.263 4.263 21 C -0.026 4.026 22 N -0.120 5.120 23 H 0.279 0.721 24 C -0.193 4.193 25 Br 0.103 6.897 26 C -0.160 4.160 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.206 0.794 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.123 0.877 35 H 0.108 0.892 36 H 0.222 0.778 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 8.306 -6.971 31.013 32.854 hybrid contribution -1.437 0.436 -0.304 1.532 sum 6.870 -6.535 30.709 32.139 Atomic orbital electron populations 1.21978 0.95607 1.01897 1.01873 1.21642 0.94529 0.95886 0.85026 0.91205 1.21350 0.91757 0.94592 0.86313 0.91284 1.42961 1.04920 1.88135 1.03047 1.19055 0.93835 1.39477 0.83270 0.91621 1.25360 1.01746 1.02879 0.95030 1.69853 1.33837 1.59035 1.00432 0.85659 0.81577 0.78400 0.77632 1.20431 1.17915 1.22284 1.23372 1.01868 0.98378 0.95056 1.22910 0.95140 0.89275 0.95218 1.48387 1.50323 1.30684 1.04213 1.17331 0.78859 0.83447 0.81079 1.90731 1.42800 1.29771 1.83894 1.20198 1.09032 1.03707 0.93339 1.22214 0.96558 0.92898 0.90898 1.41599 1.34317 1.25312 1.10766 0.72062 1.21988 1.04697 1.00757 0.91839 1.96829 1.60821 1.38796 1.93275 1.22766 0.99989 0.96475 0.96727 0.92640 0.91821 0.92112 0.79406 0.93388 0.91729 0.89520 0.87694 0.89210 0.77828 0.80722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.42 7.94 71.98 0.57 -4.85 16 2 C 0.13 4.48 3.49 45.29 0.16 4.64 16 3 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 4 C 0.17 6.16 3.46 46.18 0.16 6.32 16 5 H 0.07 2.57 8.11 -2.39 -0.02 2.55 16 6 N -0.75 -33.81 4.78 -317.32 -1.52 -35.33 16 7 C -0.23 -12.44 10.45 84.03 0.88 -11.56 16 8 H 0.07 3.91 8.06 -2.91 -0.02 3.88 16 9 C -0.06 -3.40 5.50 84.86 0.47 -2.94 16 10 N -0.98 -62.13 13.97 21.65 0.30 -61.83 16 11 Si 0.94 45.32 27.73 68.60 1.90 47.23 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 13 H -0.25 -11.23 6.45 99.48 0.64 -10.59 16 14 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 15 C -0.15 -4.36 6.77 31.98 0.22 -4.15 16 16 C 0.10 2.24 5.33 86.85 0.46 2.71 16 17 N -0.60 -17.46 3.09 -791.37 -2.44 -19.91 16 18 C 0.60 17.79 7.60 86.62 0.66 18.45 16 19 O -0.59 -21.11 15.90 -4.11 -0.07 -21.18 16 20 C -0.25 -5.57 6.20 -19.04 -0.12 -5.69 16 21 C 0.11 1.79 11.70 83.90 0.98 2.78 16 22 N -0.52 -5.82 5.91 -189.56 -1.12 -6.94 16 23 H 0.44 1.93 8.96 -92.71 -0.83 1.10 16 24 C -0.01 -0.08 7.61 83.13 0.63 0.55 16 25 Br 0.02 0.24 34.08 -20.37 -0.69 -0.46 16 26 C -0.13 -2.40 9.21 23.65 0.22 -2.18 16 27 H 0.05 1.90 8.06 -2.39 -0.02 1.89 16 28 H 0.06 2.24 6.83 -2.39 -0.02 2.22 16 29 H 0.06 2.25 6.65 -2.39 -0.02 2.23 16 30 H 0.37 16.46 2.85 -92.71 -0.26 16.19 16 31 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 32 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 34 H 0.11 2.02 5.16 -2.39 -0.01 2.01 16 35 H 0.09 1.76 8.08 -2.38 -0.02 1.74 16 36 H 0.21 2.39 8.06 -2.91 -0.02 2.36 16 37 H 0.18 2.77 5.09 -2.91 -0.01 2.75 16 Total: -1.00 -72.06 320.02 1.62 -70.45 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: -0.03 Total: 23.88 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 5.29 Total: 4.09 kcal Atomic # 7 Polarization: -119.23 SS G_CDS: -4.78 Total: -124.00 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.07 Total: -21.18 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.90 Total: 47.23 kcal Atomic # 35 Polarization: 0.24 SS G_CDS: -0.69 Total: -0.46 kcal Total: -72.06 1.62 -70.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986569351.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.678 kcal (2) G-P(sol) polarization free energy of solvation -72.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds