Wall clock time and date at job start Tue Mar 31 2020 23:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 110.00450 * 2 1 4 4 C 1.54329 * 109.88114 * 121.09336 * 2 1 3 5 5 H 1.08996 * 110.87143 * 23.17220 * 4 2 1 6 6 N 1.46511 * 110.71798 * 259.97344 * 4 2 1 7 7 C 1.36936 * 119.99462 * 160.02135 * 6 4 2 8 8 H 1.07999 * 120.00620 * 0.02562 * 7 6 4 9 9 C 1.38812 * 119.99522 * 180.02562 * 7 6 4 10 10 N 1.31623 * 119.99992 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00081 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.46968 * 60.00029 * 11 9 7 13 13 H 1.48498 * 109.47056 * 299.99900 * 11 9 7 14 14 H 1.48503 * 109.47195 * 180.02562 * 11 9 7 15 15 C 1.55157 * 102.94563 * 141.61209 * 4 2 1 16 16 C 1.54916 * 101.57829 * 324.49658 * 15 4 2 17 17 N 1.47022 * 109.88588 * 238.90016 * 2 1 3 18 18 C 1.34770 * 125.64794 * 61.60882 * 17 2 1 19 19 O 1.21630 * 120.00340 * 358.04141 * 18 17 2 20 20 C 1.47264 * 120.00261 * 178.04367 * 18 17 2 21 21 C 1.36747 * 126.93975 * 187.75073 * 20 18 17 22 22 N 1.34732 * 108.40922 * 179.83444 * 21 20 18 23 23 H 0.97002 * 124.85192 * 180.13489 * 22 21 20 24 24 C 1.36461 * 110.29392 * 0.44756 * 22 21 20 25 25 Br 1.89101 * 125.58218 * 179.72929 * 24 22 21 26 26 C 1.34590 * 108.83863 * 359.72388 * 24 22 21 27 27 H 1.08993 * 109.47246 * 298.91306 * 1 2 3 28 28 H 1.09005 * 109.46698 * 58.90577 * 1 2 3 29 29 H 1.09001 * 109.47361 * 178.90351 * 1 2 3 30 30 H 0.96994 * 119.99810 * 340.02066 * 6 4 2 31 31 H 0.96996 * 119.99945 * 0.02562 * 10 9 7 32 32 H 1.09003 * 111.00206 * 82.56945 * 15 4 2 33 33 H 1.08997 * 111.00136 * 206.42860 * 15 4 2 34 34 H 1.09001 * 110.36463 * 155.84906 * 16 15 4 35 35 H 1.08991 * 110.36580 * 278.17443 * 16 15 4 36 36 H 1.07992 * 125.79274 * 0.02562 * 21 20 18 37 37 H 1.07999 * 126.83414 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 1.2428 5 1 1.3063 -1.4457 1.6212 6 7 2.4554 0.1962 2.2876 7 6 2.5573 -0.2224 3.5874 8 1 2.3428 -1.2497 3.8424 9 6 2.9364 0.6738 4.5774 10 7 3.1983 1.9257 4.2666 11 14 3.0762 0.1027 6.3505 12 1 4.0859 -0.9822 6.4429 13 1 1.7595 -0.4058 6.8120 14 1 3.4936 1.2424 7.2062 15 6 3.2876 -1.5143 0.6926 16 6 2.8145 -1.8795 -0.7366 17 7 2.0300 -0.7141 -1.1838 18 6 1.8075 -0.3622 -2.4656 19 8 1.1120 0.6028 -2.7194 20 6 2.4064 -1.1460 -3.5590 21 6 2.3990 -0.8373 -4.8912 22 7 3.0555 -1.8077 -5.5565 23 1 3.1935 -1.8258 -6.5165 24 6 3.4924 -2.7649 -4.6876 25 35 4.4554 -4.3224 -5.1596 26 6 3.1259 -2.4190 -3.4396 27 1 -0.3633 0.4968 0.8995 28 1 -0.3633 0.5308 -0.8801 29 1 -0.3634 -1.0275 -0.0197 30 1 2.6484 1.1188 2.0586 31 1 3.1261 2.2221 3.3459 32 1 4.1654 -0.8688 0.6606 33 1 3.4850 -2.4110 1.2799 34 1 3.6716 -2.0340 -1.3920 35 1 2.1886 -2.7715 -0.7126 36 1 1.9466 0.0375 -5.3343 37 1 3.3227 -2.9688 -2.5312 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986569354.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:14 Heat of formation + Delta-G solvation = 40.470092 kcal Electronic energy + Delta-G solvation = -21566.832397 eV Core-core repulsion = 18198.981337 eV Total energy + Delta-G solvation = -3367.851060 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.53672 -39.61205 -37.27035 -34.40066 -32.31477 -32.15591 -31.09822 -30.62402 -28.92587 -28.37866 -25.08010 -23.84777 -23.14995 -21.49207 -20.96341 -19.94377 -19.12327 -18.08912 -17.36061 -16.22065 -15.87528 -15.19276 -14.88975 -14.50716 -14.31846 -13.93064 -13.70044 -13.60021 -13.36514 -12.90672 -12.72594 -12.49926 -12.17726 -11.91488 -11.40353 -11.34243 -11.16237 -10.93301 -10.90592 -10.59385 -10.48673 -10.17064 -9.98508 -9.68683 -9.23445 -9.18779 -8.91607 -8.68951 -8.31011 -7.07335 -6.11906 -3.13294 0.90446 1.52185 1.82742 2.80853 3.28619 3.51728 3.54606 3.55114 3.72656 4.65642 4.66907 4.71092 4.99643 5.03584 5.14479 5.27541 5.33898 5.46393 5.53138 5.64130 5.70140 5.77321 5.93897 6.02218 6.08240 6.16972 6.28840 6.33008 6.43985 6.57353 6.60728 6.76246 6.85665 6.90062 7.78095 7.82030 8.43307 8.73280 9.18303 10.04817 10.18919 11.36111 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.019552 B = 0.002693 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.726191 B =10393.730040 C =11475.025556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.129 3.871 3 H 0.074 0.926 4 C 0.181 3.819 5 H 0.066 0.934 6 N -0.727 5.727 7 C -0.334 4.334 8 H 0.066 0.934 9 C -0.042 4.042 10 N -0.941 5.941 11 Si 1.080 2.920 12 H -0.295 1.295 13 H -0.295 1.295 14 H -0.285 1.285 15 C -0.156 4.156 16 C 0.089 3.911 17 N -0.601 5.601 18 C 0.603 3.397 19 O -0.552 6.552 20 C -0.217 4.217 21 C 0.096 3.904 22 N -0.539 5.539 23 H 0.421 0.579 24 C -0.006 4.006 25 Br 0.004 6.996 26 C -0.124 4.124 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.368 0.632 31 H 0.256 0.744 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.187 0.813 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.627 -13.749 -23.841 27.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.025 3.975 3 H 0.092 0.908 4 C 0.070 3.930 5 H 0.084 0.916 6 N -0.368 5.368 7 C -0.464 4.464 8 H 0.084 0.916 9 C -0.240 4.240 10 N -0.586 5.586 11 Si 0.911 3.089 12 H -0.222 1.222 13 H -0.222 1.222 14 H -0.211 1.211 15 C -0.197 4.197 16 C -0.035 4.035 17 N -0.333 5.333 18 C 0.393 3.607 19 O -0.432 6.432 20 C -0.228 4.228 21 C -0.042 4.042 22 N -0.137 5.137 23 H 0.259 0.741 24 C -0.192 4.192 25 Br 0.087 6.913 26 C -0.151 4.151 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.202 0.798 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.204 0.796 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.957 -13.541 -22.682 26.489 hybrid contribution -0.323 -0.073 -2.071 2.097 sum 1.634 -13.614 -24.753 28.297 Atomic orbital electron populations 1.22047 0.94803 1.01715 1.02669 1.21874 0.94511 0.96645 0.84459 0.90759 1.21190 0.93603 0.91431 0.86807 0.91645 1.42354 1.82128 1.08445 1.03912 1.20002 1.44571 0.96966 0.84894 0.91577 1.25788 0.99540 0.94460 1.04244 1.70879 1.51600 1.15844 1.20297 0.83241 0.75887 0.74810 0.74971 1.22224 1.22222 1.21063 1.23565 1.01209 1.01748 0.93192 1.22801 0.95083 0.88501 0.97066 1.48273 1.51902 1.28456 1.04682 1.16858 0.79963 0.83218 0.80700 1.90762 1.40030 1.28994 1.83448 1.20395 1.10453 0.98664 0.93252 1.21968 0.96955 0.93661 0.91597 1.41594 1.44271 1.17894 1.09894 0.74121 1.21876 1.11185 0.94266 0.91920 1.96789 1.72108 1.29029 1.93392 1.22721 1.00268 0.96426 0.95671 0.91348 0.91778 0.93013 0.79764 0.93286 0.90782 0.90525 0.90073 0.91570 0.79571 0.81392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.10 37.15 0.34 -2.32 16 2 C 0.13 2.34 3.22 -66.95 -0.22 2.12 16 3 H 0.07 1.50 7.69 -51.93 -0.40 1.10 16 4 C 0.18 3.54 3.11 -66.09 -0.21 3.34 16 5 H 0.07 1.30 7.84 -51.93 -0.41 0.89 16 6 N -0.73 -17.77 5.25 -51.64 -0.27 -18.04 16 7 C -0.33 -9.11 9.98 -15.06 -0.15 -9.26 16 8 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 9 C -0.04 -1.21 5.50 -17.43 -0.10 -1.31 16 10 N -0.94 -28.87 13.70 55.49 0.76 -28.11 16 11 Si 1.08 25.51 29.92 -169.99 -5.09 20.43 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 C -0.16 -2.61 6.77 -24.58 -0.17 -2.77 16 16 C 0.09 1.21 5.32 -2.52 -0.01 1.20 16 17 N -0.60 -9.65 3.06 -164.33 -0.50 -10.16 16 18 C 0.60 9.80 7.64 -12.60 -0.10 9.71 16 19 O -0.55 -10.52 15.90 5.25 0.08 -10.43 16 20 C -0.22 -2.77 6.20 -103.35 -0.64 -3.41 16 21 C 0.10 0.94 11.70 -16.82 -0.20 0.74 16 22 N -0.54 -4.11 5.91 -11.27 -0.07 -4.18 16 23 H 0.42 1.84 8.96 -40.82 -0.37 1.47 16 24 C -0.01 -0.05 7.61 -16.78 -0.13 -0.18 16 25 Br 0.00 0.03 34.08 -68.01 -2.32 -2.29 16 26 C -0.12 -1.36 9.22 -37.45 -0.35 -1.70 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.06 1.14 6.84 -51.93 -0.36 0.78 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.37 9.46 6.34 -40.82 -0.26 9.20 16 31 H 0.26 7.76 6.77 -40.82 -0.28 7.48 16 32 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.08 0.97 5.17 -51.93 -0.27 0.70 16 35 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 36 H 0.19 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.17 1.69 5.08 -52.49 -0.27 1.42 16 LS Contribution 325.72 15.07 4.91 4.91 Total: -1.00 -33.22 325.72 -8.75 -41.96 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -4.34 Total: 9.76 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -1.92 Total: -3.85 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: -0.08 Total: -60.49 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 14 Polarization: 25.51 SS G_CDS: -5.09 Total: 20.43 kcal Atomic # 35 Polarization: 0.03 SS G_CDS: -2.32 Total: -2.29 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.22 -8.75 -41.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986569354.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.435 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds