Wall clock time and date at job start Tue Mar 31 2020 23:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 119.99735 * 2 1 4 4 O 1.21630 * 119.99976 * 179.31812 * 3 2 1 5 5 C 1.47264 * 120.00057 * 359.31865 * 3 2 1 6 6 C 1.36750 * 126.93000 * 190.35139 * 5 3 2 7 7 N 1.34737 * 108.40293 * 179.83624 * 6 5 3 8 8 H 0.97002 * 124.85654 * 180.20692 * 7 6 5 9 9 C 1.36459 * 110.29481 * 0.44609 * 7 6 5 10 10 Br 1.89101 * 125.58115 * 179.72855 * 9 7 6 11 11 C 1.34582 * 108.83718 * 359.72833 * 9 7 6 12 12 C 1.46497 * 120.00181 * 179.97438 * 2 1 3 13 13 C 1.53780 * 113.61191 * 60.00193 * 12 2 1 14 14 C 1.53788 * 87.08058 * 220.01894 * 13 12 2 15 15 N 1.46504 * 113.61222 * 139.98280 * 14 13 12 16 16 C 1.36931 * 119.99753 * 154.72297 * 15 14 13 17 17 H 1.08000 * 120.00024 * 0.02562 * 16 15 14 18 18 C 1.38816 * 120.00151 * 179.97438 * 16 15 14 19 19 N 1.31619 * 119.99716 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00266 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46842 * 60.00167 * 20 18 16 22 22 H 1.48495 * 109.46869 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46591 * 300.00542 * 20 18 16 24 24 C 1.53778 * 87.08139 * 25.43567 * 14 13 12 25 25 H 1.08997 * 109.47279 * 276.64962 * 1 2 3 26 26 H 1.09004 * 109.47147 * 36.65234 * 1 2 3 27 27 H 1.09004 * 109.46939 * 156.64958 * 1 2 3 28 28 H 1.07995 * 125.80419 * 0.02562 * 6 5 3 29 29 H 1.08004 * 126.83426 * 179.97438 * 11 9 7 30 30 H 1.09001 * 112.91036 * 191.25621 * 12 2 1 31 31 H 1.08998 * 113.61303 * 105.47316 * 13 12 2 32 32 H 1.08994 * 113.61560 * 334.56595 * 13 12 2 33 33 H 1.09000 * 113.60883 * 270.80093 * 14 13 12 34 34 H 0.96994 * 119.99804 * 335.00029 * 15 14 13 35 35 H 0.96998 * 119.99739 * 179.97438 * 19 18 16 36 36 H 1.08997 * 113.61565 * 89.11085 * 24 14 13 37 37 H 1.09003 * 113.61163 * 220.02570 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3550 1.1673 0.0125 5 6 1.4025 2.4425 -0.0152 6 6 1.9250 3.6906 -0.2136 7 7 0.9202 4.5864 -0.1560 8 1 1.0243 5.5443 -0.2682 9 6 -0.2642 3.9541 0.0881 10 35 -1.9473 4.7988 0.2605 11 6 -0.0384 2.6310 0.1860 12 6 2.1975 -1.2687 0.0006 13 6 1.8954 -2.1549 -1.2193 14 6 1.9130 -3.3526 -0.2548 15 7 0.8717 -4.3450 -0.5326 16 6 1.0480 -5.6479 -0.1497 17 1 1.9545 -5.9437 0.3574 18 6 0.0612 -6.5882 -0.4124 19 7 -1.0437 -6.2275 -1.0300 20 14 0.3014 -8.3653 0.1105 21 1 0.4741 -8.4286 1.5841 22 1 -0.8879 -9.1623 -0.2837 23 1 1.5094 -8.9177 -0.5536 24 6 1.5373 -2.3608 0.8587 25 1 -0.3634 0.1190 1.0207 26 1 -0.3634 0.8245 -0.6135 27 1 -0.3633 -0.9435 -0.4073 28 1 2.9656 3.9192 -0.3900 29 1 -0.7719 1.8612 0.3754 30 1 3.2625 -1.1437 0.1965 31 1 2.6998 -2.1746 -1.9546 32 1 0.9184 -1.9670 -1.6643 33 1 2.8999 -3.7981 -0.1300 34 1 0.0592 -4.0800 -0.9913 35 1 -1.7331 -6.8846 -1.2139 36 1 0.4624 -2.2291 0.9818 37 1 2.0528 -2.5467 1.8010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999131720.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:22 Heat of formation + Delta-G solvation = 47.283058 kcal Electronic energy + Delta-G solvation = -21106.567721 eV Core-core repulsion = 17739.012094 eV Total energy + Delta-G solvation = -3367.555627 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.36004 -40.91509 -39.08343 -36.20583 -34.93345 -32.82414 -32.44434 -31.56838 -29.37438 -28.04416 -26.66230 -26.32910 -24.93483 -22.53840 -21.86295 -20.38791 -19.98840 -19.18596 -19.00775 -17.72749 -16.95857 -16.51064 -16.34820 -15.95071 -15.40722 -15.30994 -15.15762 -14.89482 -14.39299 -14.15411 -14.02179 -13.50443 -13.41093 -13.19598 -13.10423 -12.73763 -12.34513 -12.25141 -12.11882 -12.00674 -11.94196 -11.65323 -11.56019 -11.37798 -10.87659 -10.82322 -9.99829 -9.62213 -9.28293 -8.96350 -7.92372 -5.20441 0.23854 0.68354 1.02812 1.49967 1.52385 1.58349 2.00710 2.35157 2.45325 2.59497 3.39217 3.68607 3.85075 3.89414 3.99042 4.01989 4.24008 4.26264 4.31490 4.33933 4.42759 4.65645 4.74426 4.79877 4.88065 4.91719 4.98104 5.13787 5.17334 5.38629 5.47092 5.52834 5.57455 5.76121 6.29205 6.29714 6.53187 7.24809 7.36331 8.11472 8.35860 9.30602 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.020180 B = 0.002345 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.193914 B =11935.823320 C =13111.140255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.593 5.593 3 C 0.584 3.416 4 O -0.593 6.593 5 C -0.256 4.256 6 C 0.115 3.885 7 N -0.522 5.522 8 H 0.438 0.562 9 C -0.007 4.007 10 Br 0.018 6.982 11 C -0.137 4.137 12 C 0.132 3.868 13 C -0.150 4.150 14 C 0.153 3.847 15 N -0.722 5.722 16 C -0.245 4.245 17 H 0.076 0.924 18 C -0.074 4.074 19 N -0.968 5.968 20 Si 0.971 3.029 21 H -0.278 1.278 22 H -0.296 1.296 23 H -0.279 1.279 24 C -0.161 4.161 25 H 0.071 0.929 26 H 0.102 0.898 27 H 0.069 0.931 28 H 0.205 0.795 29 H 0.180 0.820 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.375 0.625 35 H 0.251 0.749 36 H 0.080 0.920 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.735 29.919 2.321 30.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.322 5.322 3 C 0.376 3.624 4 O -0.476 6.476 5 C -0.266 4.266 6 C -0.026 4.026 7 N -0.120 5.120 8 H 0.279 0.721 9 C -0.194 4.194 10 Br 0.102 6.898 11 C -0.163 4.163 12 C 0.028 3.972 13 C -0.190 4.190 14 C 0.043 3.957 15 N -0.360 5.360 16 C -0.377 4.377 17 H 0.094 0.906 18 C -0.266 4.266 19 N -0.619 5.619 20 Si 0.800 3.200 21 H -0.205 1.205 22 H -0.222 1.222 23 H -0.205 1.205 24 C -0.203 4.203 25 H 0.089 0.911 26 H 0.120 0.880 27 H 0.088 0.912 28 H 0.222 0.778 29 H 0.197 0.803 30 H 0.127 0.873 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.208 0.792 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.719 30.198 2.445 30.306 hybrid contribution 0.007 -0.932 -0.059 0.934 sum -0.712 29.266 2.387 29.372 Atomic orbital electron populations 1.22572 0.78470 1.04306 1.02839 1.47625 1.07718 1.04972 1.71856 1.17752 0.86094 0.83595 0.74958 1.90722 1.14904 1.88050 1.53952 1.20270 0.94023 0.92795 1.19504 1.22239 0.94561 0.87193 0.98576 1.41610 1.04617 1.10826 1.54943 0.72093 1.22031 0.86960 0.93421 1.17004 1.96829 1.16053 1.79625 1.97320 1.22967 0.94926 0.94301 1.04103 1.22268 0.97043 0.80896 0.97002 1.23781 1.02024 0.95881 0.97349 1.21626 0.92480 0.87326 0.94272 1.42483 1.19211 1.05257 1.69051 1.19659 1.01688 0.86479 1.29867 0.90597 1.25529 0.96712 1.02141 1.02217 1.69795 1.08918 1.34636 1.48515 0.85249 0.76517 0.80175 0.78041 1.20462 1.22223 1.20530 1.24104 1.01058 0.96064 0.99036 0.91080 0.87963 0.91217 0.77793 0.80347 0.87321 0.91266 0.90143 0.90378 0.79236 0.94011 0.90106 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.36 7.46 127.77 0.95 2.32 16 2 N -0.59 -16.72 3.08 -823.68 -2.54 -19.25 16 3 C 0.58 17.10 7.67 86.62 0.66 17.76 16 4 O -0.59 -21.04 16.41 -4.13 -0.07 -21.11 16 5 C -0.26 -5.62 6.06 -19.04 -0.12 -5.73 16 6 C 0.11 1.79 11.71 83.90 0.98 2.77 16 7 N -0.52 -5.87 5.91 -189.56 -1.12 -6.99 16 8 H 0.44 1.97 8.96 -92.71 -0.83 1.14 16 9 C -0.01 -0.10 7.61 83.14 0.63 0.53 16 10 Br 0.02 0.23 34.08 -20.37 -0.69 -0.46 16 11 C -0.14 -2.48 8.78 23.64 0.21 -2.27 16 12 C 0.13 4.16 4.21 45.52 0.19 4.35 16 13 C -0.15 -5.07 7.35 31.12 0.23 -4.84 16 14 C 0.15 6.04 4.48 45.52 0.20 6.25 16 15 N -0.72 -35.97 5.40 -320.43 -1.73 -37.70 16 16 C -0.25 -13.51 9.97 84.04 0.84 -12.67 16 17 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 18 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 19 N -0.97 -58.56 13.06 21.65 0.28 -58.27 16 20 Si 0.97 45.91 29.55 68.60 2.03 47.93 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 24 C -0.16 -5.51 7.27 31.12 0.23 -5.29 16 25 H 0.07 1.43 7.63 -2.39 -0.02 1.42 16 26 H 0.10 1.94 4.85 -2.39 -0.01 1.93 16 27 H 0.07 1.76 6.09 -2.39 -0.01 1.74 16 28 H 0.21 2.36 8.06 -2.91 -0.02 2.34 16 29 H 0.18 2.89 4.84 -2.91 -0.01 2.87 16 30 H 0.11 3.59 7.23 -2.39 -0.02 3.58 16 31 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.08 2.74 7.00 -2.39 -0.02 2.72 16 33 H 0.08 3.07 8.10 -2.39 -0.02 3.05 16 34 H 0.38 19.86 7.92 -92.71 -0.73 19.13 16 35 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 36 H 0.08 2.83 6.57 -2.39 -0.02 2.81 16 37 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -69.99 326.55 1.21 -68.78 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: -0.43 Total: 27.63 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 5.48 Total: -0.55 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -5.11 Total: -122.22 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.07 Total: -21.11 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Atomic # 35 Polarization: 0.23 SS G_CDS: -0.69 Total: -0.46 kcal Total: -69.99 1.21 -68.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999131720.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.060 kcal (2) G-P(sol) polarization free energy of solvation -69.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds