Wall clock time and date at job start Tue Mar 31 2020 23:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00242 * 2 1 4 4 H 1.48502 * 109.47372 * 240.00329 * 3 2 1 5 5 H 1.48501 * 109.47099 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47368 * 119.99694 * 3 2 1 7 7 C 1.38814 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00357 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99517 * 0.02562 * 7 2 1 10 10 C 1.46509 * 119.99719 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.49382 * 324.93044 * 10 9 7 12 12 C 1.53108 * 109.51200 * 204.87036 * 10 9 7 13 13 C 1.53040 * 109.49896 * 178.68480 * 12 10 9 14 14 C 1.53191 * 109.34455 * 61.34632 * 13 12 10 15 15 N 1.46926 * 108.77088 * 305.35139 * 14 13 12 16 16 C 1.34781 * 120.62500 * 233.58154 * 15 14 13 17 17 O 1.21632 * 119.99702 * 173.79298 * 16 15 14 18 18 C 1.47257 * 120.00288 * 353.79573 * 16 15 14 19 19 C 1.36752 * 126.93732 * 151.52241 * 18 16 15 20 20 N 1.34729 * 108.41380 * 179.97438 * 19 18 16 21 21 H 0.96997 * 124.86010 * 180.02562 * 20 19 18 22 22 C 1.36467 * 110.28767 * 359.97438 * 20 19 18 23 23 Br 1.89097 * 125.57663 * 180.02562 * 22 20 19 24 24 C 1.34584 * 108.83994 * 359.75363 * 22 20 19 25 25 C 1.46924 * 118.74438 * 53.60493 * 15 14 13 26 26 H 0.96996 * 119.99802 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00540 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.50474 * 58.65501 * 12 10 9 29 29 H 1.08996 * 109.44968 * 298.67455 * 12 10 9 30 30 H 1.09001 * 109.49752 * 301.37671 * 13 12 10 31 31 H 1.09001 * 109.49698 * 181.31492 * 13 12 10 32 32 H 1.08996 * 109.58320 * 65.13020 * 14 13 12 33 33 H 1.08997 * 109.58644 * 185.41898 * 14 13 12 34 34 H 1.08004 * 125.79207 * 359.96537 * 19 18 16 35 35 H 1.08004 * 126.83217 * 180.25173 * 24 22 20 36 36 H 1.09001 * 109.58355 * 66.18046 * 25 15 14 37 37 H 1.09000 * 109.58807 * 186.60217 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9687 -3.5516 -0.5880 12 6 1.1803 -4.7546 -0.6055 13 6 1.9576 -6.0726 -0.6342 14 6 2.3201 -6.4793 0.7976 15 7 3.0395 -5.3690 1.4366 16 6 4.2432 -5.5697 2.0088 17 8 4.8796 -4.6244 2.4341 18 6 4.7880 -6.9334 2.1189 19 6 6.1075 -7.2916 2.1453 20 7 6.1825 -8.6323 2.2551 21 1 7.0080 -9.1400 2.2953 22 6 4.9308 -9.1738 2.3030 23 35 4.5344 -11.0164 2.4561 24 6 4.0247 -8.1814 2.2295 25 6 2.4217 -4.0360 1.4406 26 1 -0.4850 0.8400 -0.0004 27 1 0.3556 -2.3881 -0.0002 28 1 0.8998 -4.4761 -1.6213 29 1 0.2814 -4.8763 -0.0012 30 1 2.8692 -5.9447 -1.2179 31 1 1.3411 -6.8487 -1.0878 32 1 1.4102 -6.6955 1.3574 33 1 2.9551 -7.3649 0.7762 34 1 6.9471 -6.6146 2.0877 35 1 2.9497 -8.2836 2.2461 36 1 1.5201 -4.0530 2.0530 37 1 3.1258 -3.3081 1.8436 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999733739.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:00 Heat of formation + Delta-G solvation = 33.038838 kcal Electronic energy + Delta-G solvation = -21543.173935 eV Core-core repulsion = 18175.000632 eV Total energy + Delta-G solvation = -3368.173303 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.54504 -39.39604 -37.07574 -34.43811 -32.36638 -32.15918 -31.50105 -30.92425 -28.56506 -28.13004 -25.38815 -23.97832 -22.29352 -21.89909 -20.96247 -19.83978 -19.02556 -18.03709 -17.02972 -16.23145 -15.49352 -15.29367 -14.70257 -14.53923 -14.29628 -13.94424 -13.71369 -13.64341 -13.38293 -13.09783 -12.70161 -12.40839 -12.27323 -12.15904 -11.38127 -11.23602 -10.96922 -10.93823 -10.77623 -10.58432 -10.48318 -10.18106 -9.76210 -9.73642 -9.56353 -9.07837 -9.00664 -8.63399 -8.19653 -6.94268 -5.73894 -3.03302 0.89985 1.58584 1.86432 2.85323 3.33145 3.49461 3.52918 3.54809 3.58235 4.62951 4.70850 4.77363 5.00738 5.08718 5.20945 5.22205 5.36715 5.52825 5.56683 5.64602 5.77579 5.88303 6.00893 6.13030 6.19242 6.24544 6.29338 6.35908 6.44237 6.58675 6.85947 6.88439 6.91382 7.10725 7.76409 7.81164 8.44301 8.54810 9.56197 10.10906 10.46328 11.48467 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.029335 B = 0.002516 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.257039 B =11124.246750 C =11829.291615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.719 5.719 10 C 0.169 3.831 11 H 0.050 0.950 12 C -0.126 4.126 13 C -0.130 4.130 14 C 0.095 3.905 15 N -0.599 5.599 16 C 0.585 3.415 17 O -0.547 6.547 18 C -0.215 4.215 19 C 0.091 3.909 20 N -0.540 5.540 21 H 0.421 0.579 22 C -0.004 4.004 23 Br 0.002 6.998 24 C -0.118 4.118 25 C 0.094 3.906 26 H 0.256 0.744 27 H 0.385 0.615 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.186 0.814 35 H 0.161 0.839 36 H 0.061 0.939 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.990 -27.943 3.664 29.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.058 3.942 11 H 0.068 0.932 12 C -0.164 4.164 13 C -0.168 4.168 14 C -0.028 4.028 15 N -0.331 5.331 16 C 0.373 3.627 17 O -0.426 6.426 18 C -0.226 4.226 19 C -0.046 4.046 20 N -0.137 5.137 21 H 0.259 0.741 22 C -0.191 4.191 23 Br 0.086 6.914 24 C -0.145 4.145 25 C -0.031 4.031 26 H 0.065 0.935 27 H 0.219 0.781 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.112 0.888 34 H 0.203 0.797 35 H 0.178 0.822 36 H 0.079 0.921 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.363 -28.034 3.936 30.146 hybrid contribution 0.524 1.025 0.032 1.152 sum 10.887 -27.008 3.967 29.389 Atomic orbital electron populations 1.69652 1.05107 1.25808 1.57612 1.24738 0.95506 0.97707 1.02795 0.86267 0.78543 0.83434 0.77980 1.21251 1.21728 1.21114 1.19241 0.91090 0.84009 1.42854 0.91080 1.42374 1.05784 0.99608 1.88171 1.20502 0.94860 0.86365 0.92520 0.93168 1.21837 0.98681 0.94239 1.01690 1.21884 1.00758 0.98051 0.96139 1.22142 0.96979 0.90098 0.93540 1.48038 1.18653 1.10968 1.55443 1.17327 0.80817 0.86788 0.77756 1.90797 1.58847 1.43090 1.49855 1.20501 0.92907 0.93166 1.15976 1.21977 0.98556 0.83010 1.01075 1.41564 1.07225 1.06877 1.58073 0.74132 1.21807 0.87031 0.91466 1.18801 1.96785 1.93584 1.03427 1.97630 1.22210 0.98867 0.89281 1.04163 1.22756 0.97696 0.81635 1.00969 0.93464 0.78103 0.91542 0.92087 0.91706 0.91149 0.91721 0.88755 0.79696 0.82151 0.92089 0.89105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.24 -6.81 9.93 -15.06 -0.15 -6.96 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.72 -18.12 5.13 -53.27 -0.27 -18.40 16 10 C 0.17 3.42 2.92 -67.77 -0.20 3.23 16 11 H 0.05 1.10 8.08 -51.93 -0.42 0.68 16 12 C -0.13 -2.03 5.36 -26.65 -0.14 -2.17 16 13 C -0.13 -1.62 6.08 -26.61 -0.16 -1.79 16 14 C 0.10 1.16 5.28 -3.71 -0.02 1.14 16 15 N -0.60 -9.60 2.97 -174.10 -0.52 -10.12 16 16 C 0.58 9.78 7.63 -12.59 -0.10 9.68 16 17 O -0.55 -11.31 16.44 5.25 0.09 -11.22 16 18 C -0.21 -2.70 5.66 -103.35 -0.58 -3.29 16 19 C 0.09 0.89 11.80 -16.82 -0.20 0.69 16 20 N -0.54 -3.99 5.91 -11.26 -0.07 -4.06 16 21 H 0.42 1.78 8.96 -40.82 -0.37 1.41 16 22 C 0.00 -0.03 7.61 -16.78 -0.13 -0.16 16 23 Br 0.00 0.02 34.08 -68.01 -2.32 -2.30 16 24 C -0.12 -1.21 8.57 -37.46 -0.32 -1.53 16 25 C 0.09 1.83 6.03 -3.71 -0.02 1.80 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.39 10.18 7.80 -40.82 -0.32 9.86 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.98 4.14 -51.93 -0.21 0.77 16 34 H 0.19 1.48 8.06 -52.48 -0.42 1.06 16 35 H 0.16 1.45 6.62 -52.48 -0.35 1.10 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.09 2.06 7.00 -51.93 -0.36 1.70 16 LS Contribution 326.47 15.07 4.92 4.92 Total: -1.00 -33.62 326.47 -9.12 -42.74 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -4.53 Total: 7.94 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -2.12 Total: 0.22 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: -0.13 Total: -60.19 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Atomic # 35 Polarization: 0.02 SS G_CDS: -2.32 Total: -2.30 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.62 -9.12 -42.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999733739.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.781 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds