Wall clock time and date at job start Tue Mar 31 2020 23:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 120.00105 * 2 1 4 4 H 1.48506 * 109.46859 * 264.67065 * 3 2 1 5 5 H 1.48494 * 109.47060 * 24.66969 * 3 2 1 6 6 H 1.48500 * 109.47105 * 144.67143 * 3 2 1 7 7 C 1.38815 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99697 * 336.25018 * 7 2 1 9 9 N 1.36937 * 120.00117 * 156.23950 * 7 2 1 10 10 C 1.47424 * 125.64984 * 162.05609 * 9 7 2 11 11 C 1.54906 * 104.83356 * 155.90964 * 10 9 7 12 12 C 1.55156 * 101.58295 * 37.00704 * 11 10 9 13 13 H 1.08996 * 110.71890 * 83.04098 * 12 11 10 14 14 C 1.53000 * 110.71755 * 206.13341 * 12 11 10 15 15 N 1.46499 * 109.47054 * 182.55919 * 14 12 11 16 16 C 1.34774 * 120.00387 * 180.02562 * 15 14 12 17 17 O 1.21700 * 119.99620 * 0.02562 * 16 15 14 18 18 C 1.46670 * 120.00346 * 179.97438 * 16 15 14 19 19 C 1.37884 * 126.22567 * 179.97438 * 18 16 15 20 20 C 1.39884 * 107.09212 * 180.02562 * 19 18 16 21 21 Br 1.89102 * 126.07274 * 179.73683 * 20 19 18 22 22 C 1.35498 * 107.85260 * 0.02562 * 20 19 18 23 23 N 1.35601 * 108.85848 * 0.02562 * 22 20 19 24 24 H 0.97006 * 125.68055 * 180.02562 * 23 22 20 25 25 C 1.47328 * 125.61546 * 342.27637 * 9 7 2 26 26 H 0.97003 * 120.00087 * 359.97438 * 1 2 3 27 27 H 1.08995 * 110.36774 * 37.06540 * 10 9 7 28 28 H 1.09003 * 110.45502 * 274.79460 * 10 9 7 29 29 H 1.08998 * 111.00138 * 278.93113 * 11 10 9 30 30 H 1.09001 * 111.03796 * 155.09853 * 11 10 9 31 31 H 1.09005 * 109.46820 * 62.56294 * 14 12 11 32 32 H 1.08992 * 109.47518 * 302.56404 * 14 12 11 33 33 H 0.97005 * 120.00164 * 359.97438 * 15 14 12 34 34 H 1.08002 * 126.45533 * 359.97438 * 19 18 16 35 35 H 1.08005 * 125.57664 * 179.97438 * 22 20 19 36 36 H 1.09003 * 110.05762 * 61.68358 * 25 9 7 37 37 H 1.09002 * 109.85042 * 300.42091 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6103 1.9814 -1.3941 5 1 1.3959 2.6825 0.5843 6 1 3.4869 1.4753 0.8096 7 6 2.0102 -1.2022 0.0005 8 1 1.5388 -2.0977 0.3776 9 7 3.2925 -1.2526 -0.4773 10 6 4.2677 -2.3252 -0.2092 11 6 5.2608 -2.2641 -1.3965 12 6 5.3570 -0.7354 -1.6438 13 1 6.0752 -0.2790 -0.9627 14 6 5.7332 -0.4450 -3.0981 15 7 5.8761 1.0008 -3.2862 16 6 6.2055 1.4937 -4.4965 17 8 6.3837 0.7377 -5.4334 18 6 6.3480 2.9413 -4.6849 19 6 6.6792 3.5813 -5.8605 20 6 6.7043 4.9532 -5.5886 21 35 7.1068 6.3261 -6.8252 22 6 6.3955 5.1232 -4.2803 23 7 6.1776 3.9078 -3.7199 24 1 5.9398 3.7464 -2.7934 25 6 3.9268 -0.2413 -1.3406 26 1 -0.4850 0.8401 0.0004 27 1 3.7685 -3.2937 -0.1817 28 1 4.7882 -2.1407 0.7306 29 1 4.8576 -2.7766 -2.2698 30 1 6.2304 -2.6765 -1.1172 31 1 4.9514 -0.8217 -3.7577 32 1 6.6764 -0.9372 -3.3347 33 1 5.7330 1.6035 -2.5397 34 1 6.8818 3.1118 -6.8117 35 1 6.3337 6.0717 -3.7674 36 1 3.9677 0.7181 -0.8248 37 1 3.3644 -0.1418 -2.2690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028668513.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:11 Heat of formation + Delta-G solvation = 39.764542 kcal Electronic energy + Delta-G solvation = -21294.370988 eV Core-core repulsion = 17926.489334 eV Total energy + Delta-G solvation = -3367.881654 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.68647 -39.41591 -38.01251 -34.92032 -32.82413 -32.42734 -30.75314 -30.34796 -29.27304 -28.48933 -25.90151 -24.02555 -22.67713 -20.74397 -20.55353 -20.37575 -20.22457 -18.96083 -17.04987 -16.39826 -16.14067 -15.83761 -15.49355 -14.64287 -14.34938 -14.23554 -13.89262 -13.60481 -13.34743 -13.07986 -13.00060 -12.86944 -12.58481 -12.06887 -11.69093 -11.41654 -11.36615 -11.06924 -10.83672 -10.68975 -10.49864 -10.34184 -10.17191 -9.97599 -9.46125 -9.27024 -9.14659 -8.72906 -8.58753 -7.16214 -6.03524 -3.31865 1.12148 1.47431 2.07733 2.71725 3.01496 3.16325 3.17186 3.30660 3.37562 4.43763 4.51906 4.59427 4.72070 4.84840 4.91745 4.95528 5.14172 5.26889 5.35904 5.51585 5.55384 5.70345 5.76961 5.91551 5.98072 6.07725 6.17068 6.17781 6.28284 6.36082 6.50081 6.62415 6.70172 6.83895 7.29864 7.62008 7.98405 8.23060 8.74831 9.60068 10.08747 11.13209 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.017830 B = 0.002741 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.974791 B =10213.990649 C =11394.724933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.020 3.980 3 Si 0.886 3.114 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.281 1.281 7 C -0.243 4.243 8 H 0.094 0.906 9 N -0.610 5.610 10 C 0.132 3.868 11 C -0.121 4.121 12 C -0.117 4.117 13 H 0.080 0.920 14 C 0.133 3.867 15 N -0.726 5.726 16 C 0.588 3.412 17 O -0.526 6.526 18 C -0.040 4.040 19 C -0.079 4.079 20 C -0.183 4.183 21 Br -0.028 7.028 22 C 0.064 3.936 23 N -0.530 5.530 24 H 0.424 0.576 25 C 0.124 3.876 26 H 0.263 0.737 27 H 0.051 0.949 28 H 0.025 0.975 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.395 0.605 34 H 0.158 0.842 35 H 0.182 0.818 36 H 0.021 0.979 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.860 11.826 -9.859 23.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.178 4.178 3 Si 0.719 3.281 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.112 0.888 9 N -0.337 5.337 10 C 0.007 3.993 11 C -0.160 4.160 12 C -0.137 4.137 13 H 0.098 0.902 14 C 0.010 3.990 15 N -0.376 5.376 16 C 0.375 3.625 17 O -0.402 6.402 18 C -0.154 4.154 19 C -0.106 4.106 20 C -0.269 4.269 21 Br 0.056 6.944 22 C -0.076 4.076 23 N -0.126 5.126 24 H 0.263 0.737 25 C -0.001 4.001 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.043 0.957 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.228 0.772 34 H 0.176 0.824 35 H 0.199 0.801 36 H 0.039 0.961 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 17.824 11.725 -10.783 23.906 hybrid contribution 0.058 1.149 1.271 1.714 sum 17.883 12.874 -9.512 24.000 Atomic orbital electron populations 1.69852 1.05500 1.26583 1.52880 1.24969 0.95144 0.97320 1.00391 0.86873 0.78979 0.85136 0.77151 1.21618 1.23180 1.20779 1.18690 0.85227 0.95704 1.37332 0.88842 1.44857 1.10911 1.22201 1.55695 1.21620 0.90132 0.93124 0.94452 1.22731 0.99580 0.93601 1.00055 1.22474 0.98217 0.98317 0.94650 0.90201 1.21490 1.02013 0.78977 0.96555 1.45946 1.71074 1.09461 1.11150 1.16930 0.77149 0.85374 0.83053 1.90859 1.50897 1.57989 1.40419 1.20512 1.15731 0.89047 0.90092 1.21182 1.01004 0.90813 0.97600 1.20996 1.17831 0.93673 0.94351 1.96622 1.93871 1.46629 1.57308 1.21911 1.03200 0.89410 0.93050 1.42105 1.52844 1.05870 1.11818 0.73712 1.21763 0.90770 0.92754 0.94780 0.92664 0.93035 0.95734 0.90753 0.91119 0.90510 0.90878 0.77190 0.82436 0.80094 0.96140 0.93895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.56 13.97 55.49 0.78 -26.78 16 2 C 0.02 0.58 5.43 -17.43 -0.09 0.49 16 3 Si 0.89 21.66 24.39 -169.99 -4.15 17.52 16 4 H -0.29 -6.66 6.84 56.52 0.39 -6.27 16 5 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.28 -6.66 6.87 56.52 0.39 -6.27 16 7 C -0.24 -6.75 10.56 -15.06 -0.16 -6.91 16 8 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 9 N -0.61 -14.20 3.22 -169.83 -0.55 -14.74 16 10 C 0.13 2.43 7.23 -2.53 -0.02 2.42 16 11 C -0.12 -1.73 6.54 -24.58 -0.16 -1.89 16 12 C -0.12 -1.73 2.98 -88.79 -0.26 -1.99 16 13 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 14 C 0.13 1.80 5.00 -4.04 -0.02 1.78 16 15 N -0.73 -9.30 5.43 -61.62 -0.33 -9.63 16 16 C 0.59 8.28 7.79 -12.86 -0.10 8.18 16 17 O -0.53 -9.05 16.88 5.19 0.09 -8.96 16 18 C -0.04 -0.48 7.05 -81.98 -0.58 -1.06 16 19 C -0.08 -0.93 10.63 -39.10 -0.42 -1.35 16 20 C -0.18 -1.88 6.53 -39.94 -0.26 -2.14 16 21 Br -0.03 -0.26 34.08 -68.01 -2.32 -2.58 16 22 C 0.06 0.54 11.86 -16.86 -0.20 0.34 16 23 N -0.53 -4.77 6.00 -9.36 -0.06 -4.82 16 24 H 0.42 2.83 8.19 -40.82 -0.33 2.49 16 25 C 0.12 2.51 4.55 -2.90 -0.01 2.49 16 26 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 1.05 8.05 -51.93 -0.42 0.64 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 1.16 8.00 -51.93 -0.42 0.75 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.39 4.35 7.53 -40.82 -0.31 4.05 16 34 H 0.16 1.84 8.06 -52.49 -0.42 1.41 16 35 H 0.18 0.95 8.06 -52.48 -0.42 0.53 16 36 H 0.02 0.45 3.55 -51.93 -0.18 0.26 16 37 H 0.04 0.94 7.73 -51.93 -0.40 0.54 16 LS Contribution 327.17 15.07 4.93 4.93 Total: -1.00 -33.61 327.17 -8.50 -42.11 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -4.61 Total: 2.60 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -2.29 Total: 0.35 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.16 Total: -55.98 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.15 Total: 17.52 kcal Atomic # 35 Polarization: -0.26 SS G_CDS: -2.32 Total: -2.58 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.61 -8.50 -42.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028668513.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.877 kcal (2) G-P(sol) polarization free energy of solvation -33.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds