Wall clock time and date at job start Tue Mar 31 2020 23:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 120.00105 * 2 1 4 4 H 1.48506 * 109.46859 * 264.67065 * 3 2 1 5 5 H 1.48494 * 109.47060 * 24.66969 * 3 2 1 6 6 H 1.48500 * 109.47105 * 144.67143 * 3 2 1 7 7 C 1.38815 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99697 * 336.25018 * 7 2 1 9 9 N 1.36937 * 120.00117 * 156.23950 * 7 2 1 10 10 C 1.47424 * 125.64984 * 162.05609 * 9 7 2 11 11 C 1.54906 * 104.83356 * 155.90964 * 10 9 7 12 12 C 1.55156 * 101.58295 * 37.00704 * 11 10 9 13 13 H 1.08996 * 110.71890 * 83.04098 * 12 11 10 14 14 C 1.53000 * 110.71755 * 206.13341 * 12 11 10 15 15 N 1.46499 * 109.47054 * 182.55919 * 14 12 11 16 16 C 1.34774 * 120.00387 * 180.02562 * 15 14 12 17 17 O 1.21700 * 119.99620 * 0.02562 * 16 15 14 18 18 C 1.46670 * 120.00346 * 179.97438 * 16 15 14 19 19 C 1.37884 * 126.22567 * 179.97438 * 18 16 15 20 20 C 1.39884 * 107.09212 * 180.02562 * 19 18 16 21 21 Br 1.89102 * 126.07274 * 179.73683 * 20 19 18 22 22 C 1.35498 * 107.85260 * 0.02562 * 20 19 18 23 23 N 1.35601 * 108.85848 * 0.02562 * 22 20 19 24 24 H 0.97006 * 125.68055 * 180.02562 * 23 22 20 25 25 C 1.47328 * 125.61546 * 342.27637 * 9 7 2 26 26 H 0.97003 * 120.00087 * 359.97438 * 1 2 3 27 27 H 1.08995 * 110.36774 * 37.06540 * 10 9 7 28 28 H 1.09003 * 110.45502 * 274.79460 * 10 9 7 29 29 H 1.08998 * 111.00138 * 278.93113 * 11 10 9 30 30 H 1.09001 * 111.03796 * 155.09853 * 11 10 9 31 31 H 1.09005 * 109.46820 * 62.56294 * 14 12 11 32 32 H 1.08992 * 109.47518 * 302.56404 * 14 12 11 33 33 H 0.97005 * 120.00164 * 359.97438 * 15 14 12 34 34 H 1.08002 * 126.45533 * 359.97438 * 19 18 16 35 35 H 1.08005 * 125.57664 * 179.97438 * 22 20 19 36 36 H 1.09003 * 110.05762 * 61.68358 * 25 9 7 37 37 H 1.09002 * 109.85042 * 300.42091 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6103 1.9814 -1.3941 5 1 1.3959 2.6825 0.5843 6 1 3.4869 1.4753 0.8096 7 6 2.0102 -1.2022 0.0005 8 1 1.5388 -2.0977 0.3776 9 7 3.2925 -1.2526 -0.4773 10 6 4.2677 -2.3252 -0.2092 11 6 5.2608 -2.2641 -1.3965 12 6 5.3570 -0.7354 -1.6438 13 1 6.0752 -0.2790 -0.9627 14 6 5.7332 -0.4450 -3.0981 15 7 5.8761 1.0008 -3.2862 16 6 6.2055 1.4937 -4.4965 17 8 6.3837 0.7377 -5.4334 18 6 6.3480 2.9413 -4.6849 19 6 6.6792 3.5813 -5.8605 20 6 6.7043 4.9532 -5.5886 21 35 7.1068 6.3261 -6.8252 22 6 6.3955 5.1232 -4.2803 23 7 6.1776 3.9078 -3.7199 24 1 5.9398 3.7464 -2.7934 25 6 3.9268 -0.2413 -1.3406 26 1 -0.4850 0.8401 0.0004 27 1 3.7685 -3.2937 -0.1817 28 1 4.7882 -2.1407 0.7306 29 1 4.8576 -2.7766 -2.2698 30 1 6.2304 -2.6765 -1.1172 31 1 4.9514 -0.8217 -3.7577 32 1 6.6764 -0.9372 -3.3347 33 1 5.7330 1.6035 -2.5397 34 1 6.8818 3.1118 -6.8117 35 1 6.3337 6.0717 -3.7674 36 1 3.9677 0.7181 -0.8248 37 1 3.3644 -0.1418 -2.2690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028668513.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:10 Heat of formation + Delta-G solvation = 15.180375 kcal Electronic energy + Delta-G solvation = -21295.437038 eV Core-core repulsion = 17926.489334 eV Total energy + Delta-G solvation = -3368.947704 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.48663 -40.51948 -39.40494 -36.19139 -34.55911 -33.33209 -32.29034 -31.21013 -30.47868 -29.57965 -27.39873 -25.56295 -23.74118 -22.11230 -21.79368 -21.25837 -21.20767 -19.93578 -19.00473 -17.84555 -17.13660 -17.02305 -16.58434 -16.06709 -15.46084 -15.34065 -15.12738 -14.97484 -14.78256 -14.28326 -14.23047 -13.84352 -13.78810 -13.49132 -13.26603 -13.02919 -12.68078 -12.41626 -12.16019 -12.08954 -11.86814 -11.62175 -11.40803 -11.24153 -11.12640 -10.78419 -10.33403 -9.95751 -9.35718 -9.09987 -8.20986 -5.46095 0.25643 0.75054 1.20773 1.31301 1.34082 1.45986 1.87459 2.14340 2.17687 2.39047 2.98499 3.28235 3.60278 3.72558 3.79562 3.84602 3.98227 4.11772 4.32985 4.43746 4.45444 4.54017 4.62071 4.76213 4.77266 4.83592 5.00752 5.08220 5.12934 5.22899 5.28906 5.42084 5.47372 5.66307 6.07278 6.18184 6.36359 6.73877 6.96752 7.51543 8.07780 8.99446 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.017830 B = 0.002741 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.974791 B =10213.990649 C =11394.724933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.048 4.048 3 Si 0.958 3.042 4 H -0.268 1.268 5 H -0.312 1.312 6 H -0.263 1.263 7 C -0.240 4.240 8 H 0.056 0.944 9 N -0.631 5.631 10 C 0.122 3.878 11 C -0.108 4.108 12 C -0.099 4.099 13 H 0.109 0.891 14 C 0.139 3.861 15 N -0.719 5.719 16 C 0.589 3.411 17 O -0.566 6.566 18 C -0.061 4.061 19 C -0.089 4.089 20 C -0.203 4.203 21 Br -0.023 7.023 22 C 0.089 3.911 23 N -0.519 5.519 24 H 0.437 0.563 25 C 0.118 3.882 26 H 0.262 0.738 27 H 0.043 0.957 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.114 0.886 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.405 0.595 34 H 0.148 0.852 35 H 0.220 0.780 36 H 0.020 0.980 37 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.821 13.589 -9.490 26.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.242 4.242 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.241 1.241 6 H -0.188 1.188 7 C -0.368 4.368 8 H 0.074 0.926 9 N -0.358 5.358 10 C -0.002 4.002 11 C -0.146 4.146 12 C -0.118 4.118 13 H 0.127 0.873 14 C 0.015 3.985 15 N -0.370 5.370 16 C 0.377 3.623 17 O -0.445 6.445 18 C -0.175 4.175 19 C -0.117 4.117 20 C -0.289 4.289 21 Br 0.061 6.939 22 C -0.052 4.052 23 N -0.116 5.116 24 H 0.278 0.722 25 C -0.007 4.007 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.132 0.868 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.241 0.759 34 H 0.166 0.834 35 H 0.236 0.764 36 H 0.037 0.963 37 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 20.835 13.469 -10.386 26.895 hybrid contribution -0.899 0.521 1.150 1.550 sum 19.936 13.990 -9.236 26.047 Atomic orbital electron populations 1.70010 1.07484 1.27331 1.55633 1.25754 0.95931 1.01400 1.01099 0.85731 0.77691 0.79479 0.78308 1.19373 1.24098 1.18823 1.18634 0.87413 0.94549 1.36248 0.92622 1.44995 1.10385 1.24292 1.56143 1.21883 0.90112 0.91265 0.96974 1.22708 1.00310 0.93533 0.98049 1.22395 0.95087 0.98456 0.95862 0.87288 1.21380 1.02262 0.79595 0.95234 1.45860 1.70508 1.09388 1.11244 1.17161 0.76363 0.86061 0.82711 1.90832 1.52889 1.59175 1.41649 1.20167 1.17800 0.88480 0.91052 1.21272 1.01054 0.91892 0.97497 1.21137 1.19051 0.93192 0.95504 1.96624 1.93897 1.45913 1.57460 1.22513 1.00035 0.90262 0.92388 1.42084 1.52114 1.05378 1.12029 0.72197 1.21885 0.93613 0.92204 0.92966 0.92956 0.93866 0.94433 0.90909 0.86819 0.92588 0.88893 0.75941 0.83378 0.76382 0.96261 0.96255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.51 13.97 21.65 0.30 -60.21 16 2 C -0.05 -2.78 5.43 84.86 0.46 -2.32 16 3 Si 0.96 44.63 24.39 68.60 1.67 46.31 16 4 H -0.27 -11.39 6.84 99.48 0.68 -10.71 16 5 H -0.31 -14.85 7.11 99.48 0.71 -14.14 16 6 H -0.26 -11.33 6.87 99.48 0.68 -10.64 16 7 C -0.24 -13.70 10.56 84.03 0.89 -12.81 16 8 H 0.06 3.48 8.06 -2.91 -0.02 3.45 16 9 N -0.63 -28.99 3.22 -691.22 -2.22 -31.21 16 10 C 0.12 4.27 7.23 86.85 0.63 4.90 16 11 C -0.11 -2.69 6.54 31.99 0.21 -2.48 16 12 C -0.10 -2.55 2.98 -9.61 -0.03 -2.57 16 13 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 14 C 0.14 3.37 5.00 86.38 0.43 3.80 16 15 N -0.72 -16.53 5.43 -467.09 -2.53 -19.07 16 16 C 0.59 15.72 7.79 86.44 0.67 16.40 16 17 O -0.57 -19.28 16.88 -4.35 -0.07 -19.35 16 18 C -0.06 -1.36 7.05 40.35 0.28 -1.08 16 19 C -0.09 -2.02 10.63 22.58 0.24 -1.78 16 20 C -0.20 -3.75 6.53 22.03 0.14 -3.61 16 21 Br -0.02 -0.38 34.08 -20.37 -0.69 -1.08 16 22 C 0.09 1.19 11.86 83.48 0.99 2.18 16 23 N -0.52 -7.63 6.00 -183.54 -1.10 -8.73 16 24 H 0.44 4.07 8.19 -92.70 -0.76 3.31 16 25 C 0.12 4.50 4.55 86.67 0.39 4.90 16 26 H 0.26 15.66 8.31 -92.71 -0.77 14.88 16 27 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 1.87 8.05 -2.39 -0.02 1.85 16 30 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.06 1.62 8.00 -2.38 -0.02 1.60 16 32 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.41 7.49 7.53 -92.70 -0.70 6.79 16 34 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 35 H 0.22 1.19 8.06 -2.91 -0.02 1.16 16 36 H 0.02 0.77 3.55 -2.39 -0.01 0.76 16 37 H 0.02 0.83 7.73 -2.39 -0.02 0.81 16 Total: -1.00 -76.56 327.17 0.27 -76.29 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -0.39 Total: 11.54 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 5.32 Total: 5.51 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -5.56 Total: -119.22 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.07 Total: -19.35 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.67 Total: 46.31 kcal Atomic # 35 Polarization: -0.38 SS G_CDS: -0.69 Total: -1.08 kcal Total: -76.56 0.27 -76.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028668513.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.471 kcal (2) G-P(sol) polarization free energy of solvation -76.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds