Wall clock time and date at job start Tue Mar 31 2020 23:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34783 * 119.99965 * 2 1 4 4 O 1.21631 * 119.99885 * 178.43560 * 3 2 1 5 5 C 1.47250 * 120.00063 * 358.44202 * 3 2 1 6 6 C 1.36752 * 126.93666 * 196.43978 * 5 3 2 7 7 N 1.34736 * 108.40808 * 179.97438 * 6 5 3 8 8 H 0.97010 * 124.84867 * 179.97438 * 7 6 5 9 9 C 1.36453 * 110.29699 * 359.97438 * 7 6 5 10 10 Br 1.89096 * 125.58265 * 180.02562 * 9 7 6 11 11 C 1.34581 * 108.84011 * 359.75200 * 9 7 6 12 12 C 1.46496 * 120.00173 * 180.02562 * 2 1 3 13 13 H 1.09000 * 110.78334 * 176.76283 * 12 2 1 14 14 C 1.55162 * 110.71515 * 299.99738 * 12 2 1 15 15 C 1.54914 * 101.61669 * 153.84410 * 14 12 2 16 16 N 1.47465 * 104.81046 * 323.04570 * 15 14 12 17 17 C 1.36938 * 125.62630 * 204.04545 * 16 15 14 18 18 H 1.08001 * 119.99781 * 159.05728 * 17 16 15 19 19 C 1.38810 * 120.00310 * 339.05511 * 17 16 15 20 20 N 1.31620 * 119.99960 * 351.91472 * 19 17 16 21 21 Si 1.86800 * 120.00259 * 171.91825 * 19 17 16 22 22 H 1.48505 * 109.47002 * 94.95423 * 21 19 17 23 23 H 1.48500 * 109.47130 * 214.95809 * 21 19 17 24 24 H 1.48497 * 109.46861 * 334.95905 * 21 19 17 25 25 C 1.47021 * 108.72493 * 24.06736 * 16 15 14 26 26 H 1.08995 * 109.47260 * 276.23624 * 1 2 3 27 27 H 1.09006 * 109.46744 * 36.23706 * 1 2 3 28 28 H 1.09002 * 109.46982 * 156.23455 * 1 2 3 29 29 H 1.07993 * 125.79796 * 359.97438 * 6 5 3 30 30 H 1.08007 * 126.84033 * 180.26599 * 11 9 7 31 31 H 1.08994 * 111.00543 * 271.94021 * 14 12 2 32 32 H 1.08997 * 111.00812 * 35.75654 * 14 12 2 33 33 H 1.09003 * 110.36454 * 81.84967 * 15 14 12 34 34 H 1.08992 * 110.36854 * 204.16666 * 15 14 12 35 35 H 0.96998 * 120.00582 * 179.97438 * 20 19 17 36 36 H 1.08997 * 109.88249 * 239.55591 * 25 16 15 37 37 H 1.09002 * 109.88587 * 118.39455 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3549 1.1674 0.0288 5 6 1.4031 2.4422 -0.0347 6 6 1.9074 3.6739 -0.3490 7 7 0.9105 4.5762 -0.2641 8 1 1.0059 5.5258 -0.4384 9 6 -0.2525 3.9636 0.1021 10 35 -1.9190 4.8230 0.3474 11 6 -0.0208 2.6467 0.2542 12 6 2.1975 -1.2687 -0.0006 13 1 3.2720 -1.0948 -0.0580 14 6 1.8436 -2.1074 1.2560 15 6 2.1164 -3.5481 0.7563 16 7 1.6777 -3.5483 -0.6516 17 6 1.2890 -4.6500 -1.3658 18 1 0.6778 -4.5332 -2.2486 19 6 1.6805 -5.9169 -0.9554 20 7 2.5520 -6.0521 0.0217 21 14 0.9706 -7.4300 -1.7897 22 1 1.8908 -7.8800 -2.8649 23 1 0.8085 -8.5162 -0.7901 24 1 -0.3518 -7.0966 -2.3773 25 6 1.7273 -2.1702 -1.1615 26 1 -0.3633 0.1116 1.0215 27 1 -0.3633 0.8290 -0.6075 28 1 -0.3633 -0.9405 -0.4142 29 1 2.9310 3.8871 -0.6194 30 1 -0.7394 1.8909 0.5353 31 1 2.4958 -1.8535 2.0915 32 1 0.7958 -1.9802 1.5282 33 1 3.1800 -3.7774 0.8220 34 1 1.5362 -4.2666 1.3353 35 1 2.8253 -6.9374 0.3088 36 1 0.7357 -1.8615 -1.4924 37 1 2.4332 -2.1065 -1.9896 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033268881.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:23 Heat of formation + Delta-G solvation = 38.232480 kcal Electronic energy + Delta-G solvation = -21547.196940 eV Core-core repulsion = 18179.248850 eV Total energy + Delta-G solvation = -3367.948090 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.33723 -40.67633 -38.77972 -36.24817 -34.18920 -32.80917 -32.33048 -30.94978 -29.38003 -29.13423 -27.84165 -26.43838 -24.05915 -22.17836 -21.83736 -21.10528 -19.96457 -19.19846 -18.88559 -17.68804 -16.86193 -16.63332 -16.41060 -15.78964 -15.45080 -15.33183 -15.11074 -14.56275 -14.39233 -14.12677 -13.98821 -13.80603 -13.42650 -13.34325 -12.76205 -12.70072 -12.49431 -12.37254 -12.18593 -11.98841 -11.98078 -11.85121 -11.56144 -11.50306 -10.92020 -10.69005 -9.97302 -9.65310 -9.28146 -8.78317 -7.89390 -5.31325 0.25063 0.70010 1.05143 1.47950 1.49333 1.59413 1.93848 2.33731 2.44904 2.51509 3.31279 3.65262 3.79581 3.91154 4.01862 4.04866 4.24219 4.29946 4.31670 4.44628 4.59357 4.66896 4.69435 4.81217 4.84386 5.00789 5.04414 5.13229 5.37108 5.40315 5.52957 5.58763 5.66872 5.71259 6.21364 6.30412 6.51644 7.05951 7.23855 7.72196 8.43151 9.22741 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.023995 B = 0.002482 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.609764 B =11280.591227 C =12009.403432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.594 5.594 3 C 0.585 3.415 4 O -0.595 6.595 5 C -0.252 4.252 6 C 0.113 3.887 7 N -0.522 5.522 8 H 0.438 0.562 9 C -0.006 4.006 10 Br 0.020 6.980 11 C -0.130 4.130 12 C 0.143 3.857 13 H 0.083 0.917 14 C -0.131 4.131 15 C 0.182 3.818 16 N -0.617 5.617 17 C -0.250 4.250 18 H 0.077 0.923 19 C -0.057 4.057 20 N -0.945 5.945 21 Si 0.980 3.020 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.265 1.265 25 C 0.129 3.871 26 H 0.077 0.923 27 H 0.102 0.898 28 H 0.071 0.929 29 H 0.203 0.797 30 H 0.179 0.821 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.003 0.997 34 H 0.028 0.972 35 H 0.250 0.750 36 H 0.048 0.952 37 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.913 28.498 1.521 30.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.323 5.323 3 C 0.377 3.623 4 O -0.478 6.478 5 C -0.263 4.263 6 C -0.027 4.027 7 N -0.120 5.120 8 H 0.279 0.721 9 C -0.193 4.193 10 Br 0.103 6.897 11 C -0.157 4.157 12 C 0.039 3.961 13 H 0.101 0.899 14 C -0.170 4.170 15 C 0.056 3.944 16 N -0.344 5.344 17 C -0.379 4.379 18 H 0.095 0.905 19 C -0.252 4.252 20 N -0.591 5.591 21 Si 0.807 3.193 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.189 1.189 25 C 0.003 3.997 26 H 0.095 0.905 27 H 0.120 0.880 28 H 0.089 0.911 29 H 0.220 0.780 30 H 0.196 0.804 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.021 0.979 34 H 0.047 0.953 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -10.947 28.773 1.609 30.827 hybrid contribution 0.595 -1.119 -0.471 1.352 sum -10.352 27.654 1.138 29.550 Atomic orbital electron populations 1.22555 0.77902 1.04417 1.03112 1.47586 1.08089 1.04419 1.72255 1.17807 0.86050 0.83572 0.74871 1.90740 1.15272 1.87992 1.53783 1.20176 0.94807 0.92732 1.18559 1.22201 0.94517 0.87150 0.98830 1.41592 1.06086 1.11411 1.52885 0.72075 1.22007 0.87834 0.93750 1.15740 1.96824 1.17519 1.78895 1.96423 1.22814 0.94661 0.94256 1.03944 1.21726 0.96482 0.82510 0.95421 0.89860 1.23132 1.02213 0.95058 0.96621 1.21088 0.96046 0.92611 0.84621 1.44632 1.78400 1.02454 1.08879 1.19340 1.25003 0.84733 1.08863 0.90489 1.25880 0.98467 1.00873 0.99963 1.70140 1.34849 1.22237 1.31918 0.85062 0.78318 0.78628 0.77266 1.21380 1.21794 1.18911 1.21657 0.98358 0.85185 0.94541 0.90505 0.87993 0.91063 0.78008 0.80399 0.90511 0.89900 0.97886 0.95338 0.94084 0.93404 0.97192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.42 7.51 127.77 0.96 2.38 16 2 N -0.59 -18.44 2.89 -820.01 -2.37 -20.80 16 3 C 0.58 18.52 7.66 86.61 0.66 19.18 16 4 O -0.60 -23.29 16.33 -4.13 -0.07 -23.36 16 5 C -0.25 -5.78 5.98 -19.04 -0.11 -5.90 16 6 C 0.11 1.88 11.73 83.90 0.98 2.86 16 7 N -0.52 -6.04 5.90 -189.57 -1.12 -7.16 16 8 H 0.44 2.11 8.96 -92.70 -0.83 1.28 16 9 C -0.01 -0.09 7.61 83.14 0.63 0.55 16 10 Br 0.02 0.24 34.08 -20.37 -0.69 -0.46 16 11 C -0.13 -2.35 8.71 23.65 0.21 -2.14 16 12 C 0.14 5.51 3.35 46.18 0.15 5.67 16 13 H 0.08 3.58 7.01 -2.39 -0.02 3.57 16 14 C -0.13 -5.03 6.65 31.99 0.21 -4.82 16 15 C 0.18 9.15 5.35 86.85 0.46 9.61 16 16 N -0.62 -32.52 3.38 -691.88 -2.34 -34.86 16 17 C -0.25 -14.21 10.18 84.03 0.86 -13.36 16 18 H 0.08 4.19 7.84 -2.91 -0.02 4.16 16 19 C -0.06 -3.29 5.39 84.86 0.46 -2.83 16 20 N -0.94 -57.59 11.13 21.65 0.24 -57.35 16 21 Si 0.98 45.68 29.56 68.60 2.03 47.70 16 22 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 25 C 0.13 5.62 6.76 86.73 0.59 6.20 16 26 H 0.08 1.47 7.50 -2.39 -0.02 1.46 16 27 H 0.10 1.93 5.07 -2.38 -0.01 1.91 16 28 H 0.07 1.84 6.18 -2.39 -0.01 1.82 16 29 H 0.20 2.62 8.06 -2.91 -0.02 2.59 16 30 H 0.18 2.74 5.08 -2.91 -0.01 2.72 16 31 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.08 2.87 7.34 -2.39 -0.02 2.85 16 33 H 0.00 0.17 7.83 -2.39 -0.02 0.16 16 34 H 0.03 1.55 7.65 -2.39 -0.02 1.53 16 35 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 36 H 0.05 1.92 6.02 -2.39 -0.01 1.91 16 37 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -74.09 320.62 2.04 -72.05 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: 0.29 Total: 6.82 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: 6.06 Total: 17.41 kcal Atomic # 7 Polarization: -114.59 SS G_CDS: -5.58 Total: -120.17 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.07 Total: -23.36 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Atomic # 35 Polarization: 0.24 SS G_CDS: -0.69 Total: -0.46 kcal Total: -74.09 2.04 -72.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033268881.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.283 kcal (2) G-P(sol) polarization free energy of solvation -74.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds