Wall clock time and date at job start Tue Mar 31 2020 23:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.77964 * 2 1 4 4 C 1.54327 * 110.71785 * 123.23203 * 2 1 3 5 5 N 1.47031 * 107.26816 * 140.55937 * 4 2 1 6 6 C 1.34778 * 125.64368 * 181.09401 * 5 4 2 7 7 O 1.21691 * 120.00599 * 358.12220 * 6 5 4 8 8 C 1.46672 * 119.99719 * 178.12282 * 6 5 4 9 9 C 1.37884 * 126.22866 * 188.05392 * 8 6 5 10 10 C 1.39878 * 107.09315 * 180.02562 * 9 8 6 11 11 Br 1.89100 * 126.07130 * 180.02562 * 10 9 8 12 12 C 1.35498 * 107.85443 * 359.97438 * 10 9 8 13 13 N 1.35603 * 108.85758 * 359.73576 * 12 10 9 14 14 H 0.97003 * 125.67803 * 180.28571 * 13 12 10 15 15 C 1.47415 * 108.70461 * 1.05885 * 5 4 2 16 16 C 1.54912 * 104.83351 * 335.87117 * 15 5 4 17 17 H 1.09005 * 111.00440 * 155.11853 * 16 15 5 18 18 N 1.46498 * 111.00404 * 278.93454 * 16 15 5 19 19 C 1.36931 * 120.00095 * 273.54065 * 18 16 15 20 20 H 1.08000 * 119.99916 * 0.02562 * 19 18 16 21 21 C 1.38814 * 120.00096 * 180.02562 * 19 18 16 22 22 N 1.31625 * 119.99644 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00172 * 180.28219 * 21 19 18 24 24 H 1.48504 * 109.47300 * 179.72755 * 23 21 19 25 25 H 1.48508 * 109.46755 * 299.72174 * 23 21 19 26 26 H 1.48500 * 109.47602 * 59.72161 * 23 21 19 27 27 H 1.09005 * 109.46690 * 183.24023 * 1 2 3 28 28 H 1.08998 * 109.47463 * 303.24154 * 1 2 3 29 29 H 1.09000 * 109.47019 * 63.24818 * 1 2 3 30 30 H 1.08995 * 109.88452 * 21.14337 * 4 2 1 31 31 H 1.09004 * 110.01293 * 260.04260 * 4 2 1 32 32 H 1.08000 * 126.44985 * 0.02562 * 9 8 6 33 33 H 1.07999 * 125.57123 * 179.97438 * 12 10 9 34 34 H 1.08997 * 110.37148 * 217.03481 * 15 5 4 35 35 H 1.09004 * 110.36733 * 94.70782 * 15 5 4 36 36 H 0.96998 * 119.99870 * 93.54868 * 18 16 15 37 37 H 0.97005 * 119.99490 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0759 -0.7911 1.2074 5 7 3.2445 -1.5506 0.7392 6 6 3.9915 -2.3844 1.4898 7 8 3.7378 -2.5323 2.6707 8 6 5.1102 -3.1137 0.8831 9 6 5.8557 -4.1071 1.4819 10 6 6.8129 -4.5212 0.5497 11 35 8.1174 -5.8643 0.8152 12 6 6.6387 -3.7898 -0.5775 13 7 5.6028 -2.9351 -0.3897 14 1 5.2667 -2.3014 -1.0427 15 6 3.4633 -1.2498 -0.6873 16 6 2.0790 -0.7956 -1.2137 17 1 2.1850 -0.1525 -2.0874 18 7 1.2272 -1.9490 -1.5143 19 6 1.2984 -2.5512 -2.7420 20 1 1.9827 -2.1761 -3.4886 21 6 0.4909 -3.6437 -3.0270 22 7 -0.3435 -4.1005 -2.1173 23 14 0.5936 -4.4701 -4.6991 24 1 -0.3594 -5.6080 -4.7482 25 1 0.2474 -3.4885 -5.7584 26 1 1.9741 -4.9706 -4.9200 27 1 -0.3633 -1.0261 0.0581 28 1 -0.3634 0.5633 0.8595 29 1 -0.3633 0.4626 -0.9177 30 1 1.3129 -1.4757 1.5777 31 1 2.3735 -0.1041 1.9997 32 1 5.7251 -4.4928 2.4822 33 1 7.2261 -3.8764 -1.4796 34 1 3.7961 -2.1427 -1.2166 35 1 4.1932 -0.4478 -0.7982 36 1 0.6128 -2.2860 -0.8436 37 1 -0.9075 -4.8642 -2.3163 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054874520.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:21 Heat of formation + Delta-G solvation = 20.115988 kcal Electronic energy + Delta-G solvation = -22046.166284 eV Core-core repulsion = 18677.432604 eV Total energy + Delta-G solvation = -3368.733680 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.57293 -40.72787 -38.96089 -35.73389 -34.20456 -33.14890 -32.28132 -31.21688 -29.95351 -29.46228 -27.32821 -25.90494 -24.35825 -22.49731 -21.56314 -21.19622 -20.70356 -19.45798 -18.61955 -17.53498 -17.24302 -16.67108 -16.24351 -15.89320 -15.56607 -15.16046 -15.02308 -14.59289 -14.39022 -14.04109 -13.88128 -13.78607 -13.60159 -13.44679 -13.03743 -12.91938 -12.78068 -12.30757 -12.21564 -12.08199 -11.99452 -11.51108 -11.44907 -11.32750 -11.13430 -10.97200 -10.02904 -9.76681 -9.30128 -8.98358 -7.93746 -5.22197 0.31422 0.75798 1.34299 1.48371 1.49523 1.55780 1.78077 2.17765 2.24824 2.55775 3.34730 3.39375 3.71401 3.79429 3.87769 3.99984 4.07161 4.13524 4.34202 4.42591 4.54077 4.60291 4.65995 4.77181 4.78081 4.91017 4.95569 5.12163 5.17325 5.30790 5.35188 5.52070 5.56766 5.57852 6.24071 6.26695 6.39115 6.96553 7.34675 8.09974 8.31277 9.29415 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.011411 B = 0.003895 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.270067 B = 7186.232088 C = 8990.191495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.096 4.096 3 H 0.124 0.876 4 C 0.114 3.886 5 N -0.602 5.602 6 C 0.593 3.407 7 O -0.579 6.579 8 C -0.054 4.054 9 C -0.097 4.097 10 C -0.199 4.199 11 Br -0.020 7.020 12 C 0.080 3.920 13 N -0.519 5.519 14 H 0.435 0.565 15 C 0.057 3.943 16 C 0.162 3.838 17 H 0.094 0.906 18 N -0.722 5.722 19 C -0.236 4.236 20 H 0.088 0.912 21 C -0.072 4.072 22 N -0.970 5.970 23 Si 0.965 3.035 24 H -0.307 1.307 25 H -0.275 1.275 26 H -0.278 1.278 27 H 0.031 0.969 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.146 0.854 33 H 0.220 0.780 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.373 0.627 37 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.896 6.219 1.944 18.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.116 4.116 3 H 0.142 0.858 4 C -0.008 4.008 5 N -0.333 5.333 6 C 0.384 3.616 7 O -0.461 6.461 8 C -0.168 4.168 9 C -0.125 4.125 10 C -0.284 4.284 11 Br 0.063 6.937 12 C -0.062 4.062 13 N -0.122 5.122 14 H 0.283 0.717 15 C -0.069 4.069 16 C 0.051 3.949 17 H 0.112 0.888 18 N -0.361 5.361 19 C -0.368 4.368 20 H 0.106 0.894 21 C -0.265 4.265 22 N -0.620 5.620 23 Si 0.795 3.205 24 H -0.234 1.234 25 H -0.201 1.201 26 H -0.204 1.204 27 H 0.050 0.950 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.164 0.836 33 H 0.236 0.764 34 H 0.087 0.913 35 H 0.124 0.876 36 H 0.206 0.794 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 17.177 5.742 2.405 18.270 hybrid contribution -1.094 -0.728 -0.654 1.468 sum 16.083 5.014 1.751 16.937 Atomic orbital electron populations 1.21539 0.93860 1.01001 1.02154 1.22503 0.96671 0.99861 0.92528 0.85831 1.22080 0.86633 0.94137 0.97928 1.48297 1.29555 1.43434 1.12027 1.16936 0.81231 0.78330 0.85104 1.90776 1.72092 1.66625 1.16568 1.20130 1.02456 1.06345 0.87859 1.21210 0.94946 0.96326 0.99988 1.21082 1.03671 1.05194 0.98499 1.96575 1.50807 1.48944 1.97334 1.22563 0.91798 0.91709 1.00105 1.42949 1.25578 1.31547 1.12089 0.71715 1.23716 1.02427 1.00916 0.79821 1.21675 0.88043 0.88810 0.96326 0.88830 1.42587 1.45773 1.33718 1.14024 1.19613 1.17064 1.08248 0.91848 0.89412 1.25494 0.99652 1.00415 1.00920 1.69824 1.28692 1.27978 1.35505 0.85339 0.76980 0.77682 0.80493 1.23390 1.20062 1.20412 0.95028 0.91037 0.92079 0.94093 0.90223 0.83639 0.76381 0.91344 0.87586 0.79386 0.94396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.62 8.71 71.98 0.63 -2.99 16 2 C -0.10 -2.48 3.42 -9.61 -0.03 -2.51 16 3 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 4 C 0.11 3.47 6.46 86.73 0.56 4.03 16 5 N -0.60 -19.41 3.33 -816.49 -2.72 -22.13 16 6 C 0.59 21.87 7.81 86.45 0.68 22.55 16 7 O -0.58 -25.14 17.22 -4.32 -0.07 -25.21 16 8 C -0.05 -1.73 6.84 40.35 0.28 -1.45 16 9 C -0.10 -3.00 10.64 22.58 0.24 -2.76 16 10 C -0.20 -5.11 6.53 22.03 0.14 -4.96 16 11 Br -0.02 -0.45 34.08 -20.37 -0.69 -1.14 16 12 C 0.08 1.69 11.86 83.48 0.99 2.68 16 13 N -0.52 -12.60 5.39 -183.54 -0.99 -13.59 16 14 H 0.44 8.85 5.21 -92.71 -0.48 8.37 16 15 C 0.06 1.52 5.15 86.86 0.45 1.97 16 16 C 0.16 4.97 3.44 46.38 0.16 5.13 16 17 H 0.09 2.56 8.13 -2.38 -0.02 2.54 16 18 N -0.72 -31.49 4.74 -316.37 -1.50 -32.99 16 19 C -0.24 -11.52 9.98 84.03 0.84 -10.68 16 20 H 0.09 3.90 7.83 -2.91 -0.02 3.88 16 21 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 22 N -0.97 -57.52 13.06 21.65 0.28 -57.24 16 23 Si 0.97 43.54 29.55 68.60 2.03 45.57 16 24 H -0.31 -14.57 7.11 99.48 0.71 -13.86 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 27 H 0.03 1.14 6.35 -2.38 -0.02 1.12 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.71 16 30 H 0.04 1.48 7.76 -2.39 -0.02 1.46 16 31 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.15 4.61 8.06 -2.91 -0.02 4.58 16 33 H 0.22 2.74 8.06 -2.91 -0.02 2.72 16 34 H 0.07 2.01 5.53 -2.39 -0.01 2.00 16 35 H 0.11 1.95 8.11 -2.39 -0.02 1.93 16 36 H 0.37 18.68 6.08 -92.71 -0.56 18.12 16 37 H 0.25 14.56 8.31 -92.70 -0.77 13.79 16 Total: -1.00 -68.93 327.05 1.80 -67.13 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: 0.07 Total: 32.01 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 5.39 Total: 7.59 kcal Atomic # 7 Polarization: -121.02 SS G_CDS: -4.92 Total: -125.94 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.07 Total: -25.21 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 35 Polarization: -0.45 SS G_CDS: -0.69 Total: -1.14 kcal Total: -68.93 1.80 -67.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054874520.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.248 kcal (2) G-P(sol) polarization free energy of solvation -68.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds