Wall clock time and date at job start Tue Mar 31 2020 23:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 110.91331 * 2 1 4 4 C 1.54908 * 111.00368 * 236.09952 * 2 1 3 5 5 N 1.47425 * 104.92961 * 204.85960 * 4 2 1 6 6 C 1.34774 * 125.65138 * 204.15299 * 5 4 2 7 7 O 1.21698 * 119.99829 * 0.02562 * 6 5 4 8 8 C 1.46672 * 120.00193 * 179.97438 * 6 5 4 9 9 C 1.37881 * 126.22462 * 180.02562 * 8 6 5 10 10 C 1.39881 * 107.09165 * 180.02562 * 9 8 6 11 11 Br 1.89104 * 126.07407 * 180.02562 * 10 9 8 12 12 C 1.35502 * 107.85356 * 359.97438 * 10 9 8 13 13 N 1.35604 * 108.85645 * 359.73553 * 12 10 9 14 14 H 0.96998 * 125.67689 * 180.28257 * 13 12 10 15 15 C 1.47290 * 108.55742 * 24.15407 * 5 4 2 16 16 C 1.54325 * 107.30599 * 358.92448 * 15 5 4 17 17 H 1.08994 * 110.87038 * 96.25177 * 16 15 5 18 18 N 1.46497 * 110.72131 * 219.45483 * 16 15 5 19 19 C 1.36940 * 120.00145 * 268.52531 * 18 16 15 20 20 H 1.08003 * 119.99723 * 359.97438 * 19 18 16 21 21 C 1.38807 * 120.00230 * 180.02562 * 19 18 16 22 22 N 1.31618 * 120.00088 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00129 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46995 * 59.99830 * 23 21 19 25 25 H 1.48501 * 109.47185 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47389 * 300.00088 * 23 21 19 27 27 H 1.09001 * 109.47276 * 182.45105 * 1 2 3 28 28 H 1.09003 * 109.46690 * 302.44645 * 1 2 3 29 29 H 1.08998 * 109.47248 * 62.44806 * 1 2 3 30 30 H 1.09002 * 110.36632 * 323.75356 * 4 2 1 31 31 H 1.08995 * 110.36781 * 85.96593 * 4 2 1 32 32 H 1.08001 * 126.45639 * 0.02562 * 9 8 6 33 33 H 1.08000 * 125.57367 * 179.97438 * 12 10 9 34 34 H 1.09004 * 109.85762 * 239.50064 * 15 5 4 35 35 H 1.08995 * 110.00297 * 118.43011 * 15 5 4 36 36 H 0.96996 * 120.00123 * 88.52155 * 18 16 15 37 37 H 0.97000 * 120.00075 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4280 -1.2430 -0.7761 6 6 4.4473 -1.5601 -1.5988 7 8 4.2981 -1.4966 -2.8049 8 6 5.7368 -1.9805 -1.0405 9 6 6.8601 -2.3316 -1.7589 10 6 7.8541 -2.6625 -0.8319 11 35 9.6143 -3.2213 -1.2386 12 6 7.3319 -2.5104 0.4092 13 7 6.0476 -2.0903 0.2959 14 1 5.4471 -1.9012 1.0337 15 6 3.4675 -1.2741 0.6959 16 6 2.0862 -0.8079 1.2022 17 1 1.4452 -1.6613 1.4229 18 7 2.2287 0.0496 2.3814 19 6 2.2001 -0.5002 3.6353 20 1 2.0721 -1.5659 3.7548 21 6 2.3346 0.3124 4.7526 22 7 2.4901 1.6112 4.6070 23 14 2.2949 -0.4375 6.4631 24 1 3.4003 -1.4199 6.5986 25 1 2.4588 0.6345 7.4775 26 1 0.9946 -1.1235 6.6728 27 1 -0.3634 -1.0267 0.0439 28 1 -0.3633 0.5514 0.8673 29 1 -0.3633 0.4753 -0.9111 30 1 1.4518 -1.6704 -1.4024 31 1 2.1541 -0.1725 -2.0842 32 1 6.9548 -2.3481 -2.8346 33 1 7.8545 -2.6903 1.3370 34 1 4.2427 -0.5997 1.0599 35 1 3.6662 -2.2883 1.0423 36 1 2.3433 1.0068 2.2741 37 1 2.5837 2.1790 5.3878 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054874529.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:31 Heat of formation + Delta-G solvation = 30.367029 kcal Electronic energy + Delta-G solvation = -21607.922578 eV Core-core repulsion = 18239.633417 eV Total energy + Delta-G solvation = -3368.289161 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.52955 -39.49772 -37.60339 -34.28296 -32.96028 -32.06995 -30.91274 -30.18485 -28.95535 -27.80160 -26.25795 -24.31305 -22.74511 -21.11818 -20.51919 -20.18587 -20.02929 -17.65566 -17.32223 -16.27397 -16.11324 -15.31548 -14.97800 -14.41977 -14.00455 -13.99860 -13.73677 -13.30341 -13.21029 -12.90164 -12.82759 -12.76534 -12.49840 -12.23760 -11.71296 -11.28660 -11.17201 -11.15329 -10.88855 -10.75119 -10.43415 -10.32940 -10.18196 -10.05584 -9.87060 -9.17271 -8.98274 -8.62973 -8.30807 -7.28571 -6.00945 -3.33642 1.37419 1.68187 2.29907 2.88057 3.22756 3.27966 3.33878 3.35279 3.35626 4.36171 4.50464 4.84470 4.88234 4.91886 5.07649 5.09150 5.35300 5.42248 5.48218 5.51521 5.65680 5.71567 5.77133 5.86354 5.97711 6.01917 6.16024 6.26084 6.28734 6.36714 6.47987 6.60138 6.66989 7.15365 7.46056 7.54805 8.14404 8.16820 9.28016 9.79851 10.14830 11.20255 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.012158 B = 0.003253 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.437276 B = 8605.128108 C =10645.113275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.085 0.915 4 C 0.115 3.885 5 N -0.613 5.613 6 C 0.601 3.399 7 O -0.538 6.538 8 C -0.035 4.035 9 C -0.085 4.085 10 C -0.184 4.184 11 Br -0.034 7.034 12 C 0.061 3.939 13 N -0.527 5.527 14 H 0.430 0.570 15 C 0.057 3.943 16 C 0.180 3.820 17 H 0.073 0.927 18 N -0.709 5.709 19 C -0.259 4.259 20 H 0.072 0.928 21 C -0.003 4.003 22 N -0.926 5.926 23 Si 0.908 3.092 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.284 1.284 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.155 0.845 33 H 0.180 0.820 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.388 0.612 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.632 -8.377 -10.392 15.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.103 0.897 4 C -0.007 4.007 5 N -0.346 5.346 6 C 0.391 3.609 7 O -0.415 6.415 8 C -0.149 4.149 9 C -0.112 4.112 10 C -0.270 4.270 11 Br 0.050 6.950 12 C -0.080 4.080 13 N -0.128 5.128 14 H 0.276 0.724 15 C -0.069 4.069 16 C 0.067 3.933 17 H 0.091 0.909 18 N -0.349 5.349 19 C -0.390 4.390 20 H 0.090 0.910 21 C -0.200 4.200 22 N -0.572 5.572 23 Si 0.738 3.262 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.210 1.210 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.173 0.827 33 H 0.198 0.802 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.223 0.777 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.048 -8.571 -10.907 16.561 hybrid contribution -0.388 0.123 1.581 1.633 sum 8.660 -8.448 -9.325 15.275 Atomic orbital electron populations 1.21594 0.93570 1.01931 1.01931 1.22673 0.96597 0.99830 0.94357 0.89704 1.22300 0.82051 0.98356 0.98037 1.48465 1.12410 1.66119 1.07585 1.16635 0.81360 0.77415 0.85533 1.90824 1.82364 1.54870 1.13460 1.20394 0.96569 1.14915 0.82989 1.21104 0.89626 1.01056 0.99430 1.20944 0.93594 1.17377 0.95052 1.96582 1.13770 1.89838 1.94799 1.21964 0.85075 1.02158 0.98813 1.42945 1.12057 1.49765 1.08068 0.72397 1.23627 1.04575 1.00507 0.78235 1.21218 0.90801 0.94139 0.87098 0.90894 1.42379 1.86183 1.06273 1.00056 1.19192 1.44001 0.92618 0.83139 0.90960 1.24779 1.01791 0.95397 0.98070 1.69644 1.55128 1.02882 1.29548 0.86273 0.77991 0.77904 0.83987 1.21122 1.21532 1.21011 0.92722 0.91326 0.93018 0.91301 0.90538 0.82709 0.80241 0.90859 0.92243 0.77747 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 9.29 37.16 0.35 -1.37 16 2 C -0.11 -1.66 3.27 -88.47 -0.29 -1.95 16 3 H 0.08 1.32 8.01 -51.92 -0.42 0.90 16 4 C 0.12 1.60 6.37 -2.53 -0.02 1.59 16 5 N -0.61 -9.29 3.34 -171.84 -0.57 -9.86 16 6 C 0.60 9.85 7.82 -12.86 -0.10 9.75 16 7 O -0.54 -10.11 17.14 5.19 0.09 -10.02 16 8 C -0.03 -0.51 6.89 -81.98 -0.57 -1.07 16 9 C -0.08 -1.18 10.63 -39.10 -0.42 -1.59 16 10 C -0.18 -2.28 6.53 -39.94 -0.26 -2.54 16 11 Br -0.03 -0.36 34.08 -68.01 -2.32 -2.68 16 12 C 0.06 0.69 11.86 -16.86 -0.20 0.49 16 13 N -0.53 -6.67 5.63 -9.36 -0.05 -6.72 16 14 H 0.43 5.25 4.93 -40.82 -0.20 5.05 16 15 C 0.06 0.87 4.88 -2.92 -0.01 0.85 16 16 C 0.18 3.03 3.09 -66.10 -0.20 2.82 16 17 H 0.07 1.23 7.96 -51.93 -0.41 0.82 16 18 N -0.71 -15.28 5.15 -51.66 -0.27 -15.54 16 19 C -0.26 -6.31 9.96 -15.06 -0.15 -6.46 16 20 H 0.07 1.69 7.83 -52.48 -0.41 1.28 16 21 C 0.00 -0.08 5.50 -17.43 -0.10 -0.17 16 22 N -0.93 -25.59 13.06 55.49 0.72 -24.87 16 23 Si 0.91 20.47 29.55 -169.99 -5.02 15.45 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H 0.05 0.66 8.11 -51.93 -0.42 0.24 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.89 8.04 -51.93 -0.42 0.47 16 31 H 0.08 1.07 8.03 -51.93 -0.42 0.65 16 32 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 33 H 0.18 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.07 1.18 6.96 -51.93 -0.36 0.82 16 35 H 0.06 0.83 7.26 -51.93 -0.38 0.46 16 36 H 0.39 9.11 7.76 -40.82 -0.32 8.80 16 37 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 330.95 15.07 4.99 4.99 Total: -1.00 -28.42 330.95 -8.98 -37.39 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -4.58 Total: 11.51 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -1.97 Total: 0.36 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -0.17 Total: -56.99 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 35 Polarization: -0.36 SS G_CDS: -2.32 Total: -2.68 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.42 -8.98 -37.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054874529.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.762 kcal (2) G-P(sol) polarization free energy of solvation -28.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds