Wall clock time and date at job start Tue Mar 31 2020 23:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 110.91851 * 2 1 4 4 C 1.55389 * 111.18729 * 235.94285 * 2 1 3 5 5 N 1.47420 * 104.87384 * 204.98240 * 4 2 1 6 6 C 1.34777 * 125.65225 * 204.17150 * 5 4 2 7 7 O 1.21633 * 119.99997 * 359.97438 * 6 5 4 8 8 C 1.47256 * 120.00501 * 179.97438 * 6 5 4 9 9 C 1.36747 * 126.93735 * 359.68273 * 8 6 5 10 10 N 1.34729 * 108.41500 * 179.89180 * 9 8 6 11 11 H 0.96998 * 124.85725 * 180.14484 * 10 9 8 12 12 C 1.36463 * 110.28959 * 0.38572 * 10 9 8 13 13 Br 1.89100 * 125.58015 * 179.76198 * 12 10 9 14 14 C 1.34581 * 108.83974 * 359.75975 * 12 10 9 15 15 C 1.47030 * 108.70402 * 24.13065 * 5 4 2 16 16 C 1.54323 * 107.26913 * 358.94281 * 15 5 4 17 17 H 1.09000 * 110.71891 * 219.26691 * 16 15 5 18 18 N 1.46496 * 110.71892 * 96.16740 * 16 15 5 19 19 C 1.36945 * 119.99718 * 88.84340 * 18 16 15 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 16 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 16 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 H 1.09000 * 109.47547 * 296.10121 * 1 2 3 28 28 H 1.09007 * 109.47082 * 56.09362 * 1 2 3 29 29 H 1.08992 * 109.47793 * 176.09270 * 1 2 3 30 30 H 1.08999 * 110.34351 * 86.13369 * 4 2 1 31 31 H 1.09003 * 110.44641 * 323.88073 * 4 2 1 32 32 H 1.08003 * 125.79189 * 0.03775 * 9 8 6 33 33 H 1.07998 * 126.83484 * 179.97438 * 14 12 10 34 34 H 1.09002 * 109.88120 * 239.52502 * 15 5 4 35 35 H 1.08997 * 109.88097 * 118.36189 * 15 5 4 36 36 H 0.96996 * 120.00499 * 268.84070 * 18 16 15 37 37 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0916 -0.8114 -1.2003 5 7 3.4325 -1.2461 -0.7690 6 6 4.4559 -1.5642 -1.5862 7 8 4.3121 -1.5043 -2.7925 8 6 5.7482 -1.9844 -1.0189 9 6 6.0667 -2.0953 0.3064 10 7 7.3447 -2.5105 0.4036 11 1 7.8140 -2.6696 1.2375 12 6 7.8863 -2.6700 -0.8387 13 35 9.6546 -3.2314 -1.2043 14 6 6.9558 -2.3625 -1.7612 15 6 3.4690 -1.2743 0.7006 16 6 2.0860 -0.8080 1.2022 17 1 2.1891 -0.1707 2.0805 18 7 1.2267 -1.9575 1.4961 19 6 1.2429 -2.5233 2.7430 20 1 1.8894 -2.1224 3.5096 21 6 0.4283 -3.6121 3.0217 22 7 -0.3594 -4.1010 2.0873 23 14 0.4508 -4.3845 4.7224 24 1 -0.5022 -5.5226 4.7619 25 1 1.8197 -4.8736 5.0258 26 1 0.0523 -3.3707 5.7317 27 1 -0.3634 0.4521 0.9228 28 1 -0.3633 0.5733 -0.8530 29 1 -0.3634 -1.0252 -0.0700 30 1 2.1643 -0.1784 -2.0847 31 1 1.4599 -1.6760 -1.4044 32 1 5.4052 -1.8877 1.1345 33 1 7.0747 -2.3884 -2.8343 34 1 4.2427 -0.5986 1.0652 35 1 3.6663 -2.2887 1.0471 36 1 0.6462 -2.3177 0.8075 37 1 -0.9283 -4.8621 2.2819 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054920107.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:37 Heat of formation + Delta-G solvation = 17.371767 kcal Electronic energy + Delta-G solvation = -21725.510726 eV Core-core repulsion = 18356.658048 eV Total energy + Delta-G solvation = -3368.852678 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.35388 -40.71853 -38.78007 -35.65883 -34.04317 -32.85780 -32.37023 -31.98695 -29.63767 -29.29818 -27.16780 -25.82169 -24.39118 -22.48824 -21.69596 -20.67149 -20.57421 -19.33640 -18.62245 -17.46713 -17.14972 -16.45372 -16.18571 -15.82796 -15.51649 -15.21686 -15.16053 -14.62698 -14.43397 -14.10683 -13.97392 -13.55127 -13.37123 -13.18441 -12.92858 -12.83242 -12.71458 -12.27696 -12.15531 -12.05976 -11.91502 -11.59292 -11.41396 -11.33641 -11.07009 -10.85919 -10.09526 -9.57144 -9.40379 -8.96077 -7.87509 -5.15641 0.16657 0.63849 0.99307 1.53010 1.54439 1.60358 1.95954 2.38736 2.45604 2.61491 3.44427 3.52960 3.82166 3.93189 3.96371 4.01200 4.14755 4.23233 4.41823 4.47483 4.62938 4.70570 4.73715 4.77676 4.90792 4.99594 5.04885 5.23331 5.26483 5.36461 5.46600 5.53393 5.58796 5.64706 6.26791 6.33270 6.61799 7.22797 7.41196 8.16390 8.38604 9.35767 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.013670 B = 0.003157 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.806029 B = 8865.792330 C =10433.058635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.099 4.099 3 H 0.111 0.889 4 C 0.115 3.885 5 N -0.605 5.605 6 C 0.594 3.406 7 O -0.599 6.599 8 C -0.252 4.252 9 C 0.087 3.913 10 N -0.520 5.520 11 H 0.439 0.561 12 C -0.003 4.003 13 Br 0.025 6.975 14 C -0.111 4.111 15 C 0.071 3.929 16 C 0.162 3.838 17 H 0.089 0.911 18 N -0.723 5.723 19 C -0.233 4.233 20 H 0.088 0.912 21 C -0.073 4.073 22 N -0.970 5.970 23 Si 0.966 3.034 24 H -0.307 1.307 25 H -0.277 1.277 26 H -0.277 1.277 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.036 0.964 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.213 0.787 33 H 0.151 0.849 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.374 0.626 37 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.045 7.143 -1.979 21.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.119 4.119 3 H 0.129 0.871 4 C -0.008 4.008 5 N -0.336 5.336 6 C 0.386 3.614 7 O -0.482 6.482 8 C -0.263 4.263 9 C -0.052 4.052 10 N -0.119 5.119 11 H 0.280 0.720 12 C -0.190 4.190 13 Br 0.108 6.892 14 C -0.138 4.138 15 C -0.054 4.054 16 C 0.052 3.948 17 H 0.107 0.893 18 N -0.363 5.363 19 C -0.365 4.365 20 H 0.106 0.894 21 C -0.265 4.265 22 N -0.621 5.621 23 Si 0.796 3.204 24 H -0.234 1.234 25 H -0.204 1.204 26 H -0.203 1.203 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.055 0.945 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.229 0.771 33 H 0.169 0.831 34 H 0.116 0.884 35 H 0.084 0.916 36 H 0.207 0.793 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 20.826 6.869 -2.462 22.067 hybrid contribution -0.822 -1.085 0.736 1.547 sum 20.003 5.785 -1.725 20.894 Atomic orbital electron populations 1.21457 0.93609 1.01272 1.01912 1.22675 0.96594 0.99324 0.93270 0.87104 1.22310 0.82496 0.97668 0.98300 1.48268 1.11647 1.65730 1.07936 1.17364 0.82908 0.76183 0.84926 1.90702 1.84264 1.57304 1.15929 1.20296 0.94610 1.17425 0.93942 1.23191 0.85759 0.97872 0.98400 1.41622 1.10817 1.51669 1.07757 0.71979 1.21842 0.94383 1.15649 0.87141 1.96780 1.08680 1.89307 1.94418 1.21925 0.90314 1.02452 0.99133 1.23446 1.01591 1.01793 0.78543 1.21513 0.88227 0.88723 0.96358 0.89307 1.42634 1.47984 1.34216 1.11460 1.19648 1.18105 1.08660 0.90107 0.89425 1.25469 0.99993 1.00346 1.00722 1.69819 1.30366 1.27567 1.34368 0.85324 0.76995 0.77495 0.80577 1.23401 1.20362 1.20348 0.92240 0.91310 0.94467 0.90756 0.93824 0.77082 0.83137 0.88447 0.91635 0.79283 0.94415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.70 8.86 71.98 0.64 -3.07 16 2 C -0.10 -2.80 3.53 -9.23 -0.03 -2.83 16 3 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 4 C 0.11 3.76 6.37 87.03 0.55 4.32 16 5 N -0.60 -19.95 3.33 -814.87 -2.71 -22.66 16 6 C 0.59 21.51 7.84 86.61 0.68 22.19 16 7 O -0.60 -25.93 17.23 -4.13 -0.07 -26.00 16 8 C -0.25 -7.48 6.26 -19.04 -0.12 -7.60 16 9 C 0.09 1.92 10.42 83.90 0.87 2.79 16 10 N -0.52 -9.18 5.91 -189.56 -1.12 -10.30 16 11 H 0.44 4.62 8.96 -92.71 -0.83 3.79 16 12 C 0.00 -0.06 7.61 83.13 0.63 0.58 16 13 Br 0.03 0.42 34.08 -20.37 -0.69 -0.27 16 14 C -0.11 -3.02 10.91 23.65 0.26 -2.76 16 15 C 0.07 2.05 4.74 86.73 0.41 2.46 16 16 C 0.16 5.22 3.36 46.18 0.16 5.38 16 17 H 0.09 2.61 8.11 -2.39 -0.02 2.59 16 18 N -0.72 -31.79 4.56 -317.34 -1.45 -33.24 16 19 C -0.23 -11.41 9.97 84.03 0.84 -10.57 16 20 H 0.09 3.92 7.83 -2.91 -0.02 3.90 16 21 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 22 N -0.97 -56.89 13.06 21.65 0.28 -56.61 16 23 Si 0.97 43.17 29.55 68.60 2.03 45.20 16 24 H -0.31 -14.40 7.11 99.48 0.71 -13.69 16 25 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 26 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.04 1.35 6.44 -2.39 -0.02 1.34 16 30 H 0.07 2.36 8.04 -2.39 -0.02 2.34 16 31 H 0.04 1.65 8.00 -2.39 -0.02 1.63 16 32 H 0.21 3.87 4.42 -2.91 -0.01 3.86 16 33 H 0.15 4.14 8.06 -2.91 -0.02 4.11 16 34 H 0.10 2.06 6.85 -2.39 -0.02 2.04 16 35 H 0.07 2.12 6.95 -2.39 -0.02 2.10 16 36 H 0.37 18.57 6.21 -92.71 -0.58 17.99 16 37 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -68.53 327.02 1.34 -67.18 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: -0.28 Total: 29.24 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 5.36 Total: 7.47 kcal Atomic # 7 Polarization: -117.82 SS G_CDS: -4.99 Total: -122.81 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.07 Total: -26.00 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 35 Polarization: 0.42 SS G_CDS: -0.69 Total: -0.27 kcal Total: -68.53 1.34 -67.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054920107.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.555 kcal (2) G-P(sol) polarization free energy of solvation -68.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds