Wall clock time and date at job start Tue Mar 31 2020 23:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46491 * 120.00265 * 2 1 4 4 C 1.53000 * 109.47426 * 275.88025 * 3 2 1 5 5 H 1.08999 * 112.95922 * 68.79304 * 4 3 2 6 6 C 1.53942 * 113.77001 * 297.11489 * 4 3 2 7 7 C 1.53946 * 86.29084 * 222.08861 * 6 4 3 8 8 N 1.47580 * 113.76953 * 200.61707 * 4 3 2 9 9 C 1.36934 * 134.49422 * 318.94729 * 8 4 3 10 10 H 1.07993 * 120.00006 * 5.21100 * 9 8 4 11 11 C 1.38813 * 119.99602 * 185.21791 * 9 8 4 12 12 N 1.31618 * 120.00545 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99931 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47066 * 59.99109 * 13 11 9 15 15 H 1.48499 * 109.47092 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46721 * 299.99559 * 13 11 9 17 17 C 1.34779 * 119.99248 * 180.02562 * 2 1 3 18 18 O 1.21700 * 119.99617 * 174.49688 * 17 2 1 19 19 C 1.46669 * 120.00407 * 354.77184 * 17 2 1 20 20 C 1.37891 * 126.22500 * 171.76029 * 19 17 2 21 21 C 1.39878 * 107.08871 * 179.97438 * 20 19 17 22 22 Br 1.89106 * 126.06923 * 179.97438 * 21 20 19 23 23 C 1.35505 * 107.85462 * 0.02562 * 21 20 19 24 24 N 1.35597 * 108.85829 * 359.73013 * 23 21 20 25 25 H 0.96998 * 125.67480 * 180.28580 * 24 23 21 26 26 H 1.09002 * 109.47135 * 265.71484 * 1 2 3 27 27 H 1.08998 * 109.46812 * 25.71362 * 1 2 3 28 28 H 1.09001 * 109.47495 * 145.71109 * 1 2 3 29 29 H 1.09007 * 109.47245 * 35.88561 * 3 2 1 30 30 H 1.08998 * 109.47105 * 155.87799 * 3 2 1 31 31 H 1.08998 * 113.74224 * 336.43783 * 6 4 3 32 32 H 1.09009 * 113.73627 * 107.63712 * 6 4 3 33 33 H 1.09000 * 113.76867 * 137.90852 * 7 6 4 34 34 H 1.08996 * 113.77081 * 269.19917 * 7 6 4 35 35 H 0.96997 * 120.00311 * 180.02562 * 12 11 9 36 36 H 1.07998 * 126.45051 * 359.97246 * 20 19 17 37 37 H 1.08002 * 125.57010 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.3246 1.7842 -1.4349 5 1 1.3720 2.1027 -1.8582 6 6 3.1347 0.8563 -2.3582 7 6 3.7850 2.1380 -2.9097 8 7 3.4171 2.7587 -1.6222 9 6 3.8967 3.8145 -0.8940 10 1 3.4933 4.0221 0.0860 11 6 4.9013 4.6179 -1.4156 12 7 5.3932 4.3647 -2.6098 13 14 5.5562 6.0579 -0.4219 14 1 6.1227 5.5597 0.8572 15 1 6.6168 6.7517 -1.1958 16 1 4.4497 7.0065 -0.1370 17 6 2.1388 -1.1673 -0.0005 18 8 3.3516 -1.1698 -0.1016 19 6 1.4099 -2.4349 0.1146 20 6 1.9438 -3.6979 -0.0305 21 6 0.9002 -4.6096 0.1600 22 35 1.0392 -6.4938 0.0787 23 6 -0.2281 -3.9029 0.4122 24 7 0.0698 -2.5802 0.3929 25 1 -0.5576 -1.8567 0.5474 26 1 -0.3633 -0.0768 1.0248 27 1 -0.3633 0.9259 -0.4459 28 1 -0.3634 -0.8491 -0.5789 29 1 1.6582 1.9997 0.6024 30 1 3.1915 1.1143 0.4200 31 1 3.8291 0.2056 -1.8267 32 1 2.5255 0.3224 -3.0877 33 1 4.8606 2.0532 -3.0650 34 1 3.2634 2.5610 -3.7682 35 1 6.0955 4.9259 -2.9741 36 1 2.9736 -3.9379 -0.2501 37 1 -1.2042 -4.3244 0.6018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085705270.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:52 Heat of formation + Delta-G solvation = 94.745991 kcal Electronic energy + Delta-G solvation = -21622.646464 eV Core-core repulsion = 18257.148984 eV Total energy + Delta-G solvation = -3365.497480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.76991 -39.38481 -37.56831 -35.55126 -32.56311 -32.09199 -30.36488 -29.72770 -27.99232 -27.78212 -26.73507 -23.41624 -23.11174 -21.63172 -20.50722 -20.33436 -18.96282 -17.80524 -16.73326 -16.32030 -15.91592 -15.66522 -14.76920 -14.55639 -14.29031 -13.95048 -13.68967 -13.50265 -13.21729 -12.98827 -12.89842 -12.62718 -12.33150 -11.97415 -11.38313 -11.26343 -11.01102 -10.88045 -10.66617 -10.46612 -10.40247 -9.97757 -9.81277 -9.67288 -9.49015 -9.09061 -8.76474 -8.58172 -8.39385 -6.82365 -5.72273 -3.04427 1.25142 1.55493 2.16305 2.74898 3.04818 3.33893 3.41573 3.45554 3.47147 4.40244 4.49569 4.62066 4.65504 4.92425 4.94548 5.20074 5.28669 5.35212 5.47252 5.57515 5.66495 5.86554 5.92243 6.07873 6.19699 6.33987 6.41379 6.52172 6.65801 6.77050 6.84176 6.93049 7.31596 7.38341 7.55981 7.65683 8.03202 8.20883 9.08539 9.75385 10.66371 11.45201 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.031778 B = 0.002357 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.888125 B =11877.784341 C =12167.473367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.608 5.608 3 C 0.117 3.883 4 C 0.127 3.873 5 H 0.039 0.961 6 C -0.160 4.160 7 C 0.165 3.835 8 N -0.599 5.599 9 C -0.226 4.226 10 H 0.077 0.923 11 C -0.006 4.006 12 N -0.919 5.919 13 Si 0.910 3.090 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.286 1.286 17 C 0.584 3.416 18 O -0.508 6.508 19 C -0.031 4.031 20 C -0.083 4.083 21 C -0.180 4.180 22 Br -0.032 7.032 23 C 0.051 3.949 24 N -0.537 5.537 25 H 0.426 0.574 26 H 0.056 0.944 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.041 0.959 33 H 0.066 0.934 34 H 0.025 0.975 35 H 0.254 0.746 36 H 0.157 0.843 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.699 -20.908 6.336 27.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.341 5.341 3 C -0.006 4.006 4 C 0.019 3.981 5 H 0.057 0.943 6 C -0.198 4.198 7 C 0.039 3.961 8 N -0.325 5.325 9 C -0.353 4.353 10 H 0.095 0.905 11 C -0.203 4.203 12 N -0.566 5.566 13 Si 0.740 3.260 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.213 1.213 17 C 0.371 3.629 18 O -0.382 6.382 19 C -0.144 4.144 20 C -0.110 4.110 21 C -0.266 4.266 22 Br 0.052 6.948 23 C -0.089 4.089 24 N -0.141 5.141 25 H 0.273 0.727 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.115 0.885 31 H 0.108 0.892 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.064 0.936 36 H 0.175 0.825 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -15.832 -21.080 6.328 27.112 hybrid contribution -0.316 1.684 0.505 1.786 sum -16.148 -19.396 6.832 26.147 Atomic orbital electron populations 1.22111 0.81266 1.04170 1.00894 1.47694 1.06048 1.06721 1.73663 1.21910 0.97764 0.81801 0.99107 1.22506 0.92707 0.90174 0.92732 0.94324 1.23868 0.99619 0.97702 0.98594 1.22106 0.99418 0.86465 0.88065 1.45944 1.32108 1.33671 1.20792 1.18924 1.15544 1.03314 0.97532 0.90479 1.24796 0.99657 0.99163 0.96670 1.69826 1.29881 1.40382 1.16464 0.86245 0.78347 0.82335 0.79085 1.21056 1.21573 1.21273 1.16989 0.86848 0.81630 0.77424 1.90894 1.12554 1.85965 1.48769 1.20586 0.83416 0.95492 1.14955 1.21206 0.99379 0.88803 1.01642 1.21011 0.96399 0.90794 1.18370 1.96612 1.98698 1.01308 1.98196 1.21907 0.99395 0.82707 1.04891 1.43181 1.09332 1.07894 1.53646 0.72731 0.92538 0.89230 0.91261 0.91284 0.88528 0.89211 0.94065 0.91534 0.95736 0.93605 0.82511 0.80380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.50 8.85 59.85 0.53 1.03 16 2 N -0.61 -8.33 2.76 -183.13 -0.51 -8.84 16 3 C 0.12 2.04 5.38 -4.05 -0.02 2.02 16 4 C 0.13 2.58 4.59 -66.87 -0.31 2.28 16 5 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 6 C -0.16 -3.33 7.20 -25.81 -0.19 -3.51 16 7 C 0.16 4.10 7.39 -2.97 -0.02 4.08 16 8 N -0.60 -15.53 3.57 -170.74 -0.61 -16.14 16 9 C -0.23 -6.33 10.51 -15.06 -0.16 -6.49 16 10 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 11 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 12 N -0.92 -27.89 11.52 55.49 0.64 -27.25 16 13 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 C 0.58 8.97 7.23 -12.86 -0.09 8.87 16 18 O -0.51 -9.93 14.50 5.19 0.08 -9.86 16 19 C -0.03 -0.38 6.62 -81.98 -0.54 -0.92 16 20 C -0.08 -1.03 10.64 -39.09 -0.42 -1.44 16 21 C -0.18 -1.83 6.53 -39.94 -0.26 -2.09 16 22 Br -0.03 -0.30 34.08 -68.01 -2.32 -2.62 16 23 C 0.05 0.39 11.86 -16.86 -0.20 0.19 16 24 N -0.54 -4.38 5.04 -9.36 -0.05 -4.43 16 25 H 0.43 2.29 4.98 -40.82 -0.20 2.09 16 26 H 0.06 0.33 7.56 -51.93 -0.39 -0.06 16 27 H 0.09 0.72 8.04 -51.93 -0.42 0.30 16 28 H 0.07 0.47 5.48 -51.93 -0.28 0.19 16 29 H 0.07 1.10 8.12 -51.93 -0.42 0.67 16 30 H 0.10 2.00 7.33 -51.93 -0.38 1.62 16 31 H 0.09 2.01 6.22 -51.93 -0.32 1.69 16 32 H 0.04 0.77 8.14 -51.92 -0.42 0.34 16 33 H 0.07 1.83 7.40 -51.93 -0.38 1.44 16 34 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.16 2.00 8.06 -52.49 -0.42 1.58 16 37 H 0.18 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 326.47 15.07 4.92 4.92 Total: -1.00 -34.26 326.47 -9.11 -43.37 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -4.47 Total: -0.24 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -1.77 Total: 3.73 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.52 Total: -56.66 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 35 Polarization: -0.30 SS G_CDS: -2.32 Total: -2.62 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.26 -9.11 -43.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085705270.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.120 kcal (2) G-P(sol) polarization free energy of solvation -34.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds