Wall clock time and date at job start Tue Mar 31 2020 23:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46491 * 120.00265 * 2 1 4 4 C 1.53000 * 109.47426 * 275.88025 * 3 2 1 5 5 H 1.08999 * 112.95922 * 68.79304 * 4 3 2 6 6 C 1.53942 * 113.77001 * 297.11489 * 4 3 2 7 7 C 1.53946 * 86.29084 * 222.08861 * 6 4 3 8 8 N 1.47580 * 113.76953 * 200.61707 * 4 3 2 9 9 C 1.36934 * 134.49422 * 318.94729 * 8 4 3 10 10 H 1.07993 * 120.00006 * 5.21100 * 9 8 4 11 11 C 1.38813 * 119.99602 * 185.21791 * 9 8 4 12 12 N 1.31618 * 120.00545 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99931 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47066 * 59.99109 * 13 11 9 15 15 H 1.48499 * 109.47092 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46721 * 299.99559 * 13 11 9 17 17 C 1.34779 * 119.99248 * 180.02562 * 2 1 3 18 18 O 1.21700 * 119.99617 * 174.49688 * 17 2 1 19 19 C 1.46669 * 120.00407 * 354.77184 * 17 2 1 20 20 C 1.37891 * 126.22500 * 171.76029 * 19 17 2 21 21 C 1.39878 * 107.08871 * 179.97438 * 20 19 17 22 22 Br 1.89106 * 126.06923 * 179.97438 * 21 20 19 23 23 C 1.35505 * 107.85462 * 0.02562 * 21 20 19 24 24 N 1.35597 * 108.85829 * 359.73013 * 23 21 20 25 25 H 0.96998 * 125.67480 * 180.28580 * 24 23 21 26 26 H 1.09002 * 109.47135 * 265.71484 * 1 2 3 27 27 H 1.08998 * 109.46812 * 25.71362 * 1 2 3 28 28 H 1.09001 * 109.47495 * 145.71109 * 1 2 3 29 29 H 1.09007 * 109.47245 * 35.88561 * 3 2 1 30 30 H 1.08998 * 109.47105 * 155.87799 * 3 2 1 31 31 H 1.08998 * 113.74224 * 336.43783 * 6 4 3 32 32 H 1.09009 * 113.73627 * 107.63712 * 6 4 3 33 33 H 1.09000 * 113.76867 * 137.90852 * 7 6 4 34 34 H 1.08996 * 113.77081 * 269.19917 * 7 6 4 35 35 H 0.96997 * 120.00311 * 180.02562 * 12 11 9 36 36 H 1.07998 * 126.45051 * 359.97246 * 20 19 17 37 37 H 1.08002 * 125.57010 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.3246 1.7842 -1.4349 5 1 1.3720 2.1027 -1.8582 6 6 3.1347 0.8563 -2.3582 7 6 3.7850 2.1380 -2.9097 8 7 3.4171 2.7587 -1.6222 9 6 3.8967 3.8145 -0.8940 10 1 3.4933 4.0221 0.0860 11 6 4.9013 4.6179 -1.4156 12 7 5.3932 4.3647 -2.6098 13 14 5.5562 6.0579 -0.4219 14 1 6.1227 5.5597 0.8572 15 1 6.6168 6.7517 -1.1958 16 1 4.4497 7.0065 -0.1370 17 6 2.1388 -1.1673 -0.0005 18 8 3.3516 -1.1698 -0.1016 19 6 1.4099 -2.4349 0.1146 20 6 1.9438 -3.6979 -0.0305 21 6 0.9002 -4.6096 0.1600 22 35 1.0392 -6.4938 0.0787 23 6 -0.2281 -3.9029 0.4122 24 7 0.0698 -2.5802 0.3929 25 1 -0.5576 -1.8567 0.5474 26 1 -0.3633 -0.0768 1.0248 27 1 -0.3633 0.9259 -0.4459 28 1 -0.3634 -0.8491 -0.5789 29 1 1.6582 1.9997 0.6024 30 1 3.1915 1.1143 0.4200 31 1 3.8291 0.2056 -1.8267 32 1 2.5255 0.3224 -3.0877 33 1 4.8606 2.0532 -3.0650 34 1 3.2634 2.5610 -3.7682 35 1 6.0955 4.9259 -2.9741 36 1 2.9736 -3.9379 -0.2501 37 1 -1.2042 -4.3244 0.6018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085705270.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:51 Heat of formation + Delta-G solvation = 72.147107 kcal Electronic energy + Delta-G solvation = -21623.626426 eV Core-core repulsion = 18257.148984 eV Total energy + Delta-G solvation = -3366.477441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.60230 -40.64651 -39.24142 -36.72698 -34.25675 -33.28785 -31.21275 -30.82380 -29.84565 -28.97651 -27.72035 -25.32438 -24.65965 -22.78036 -21.46550 -21.13308 -20.81015 -18.82058 -18.58597 -17.50412 -17.19326 -16.74113 -16.57454 -15.90259 -15.63469 -15.07975 -14.85197 -14.82633 -14.26774 -14.16230 -13.90066 -13.73552 -13.68911 -13.35276 -13.02045 -12.89944 -12.57600 -12.50279 -12.31900 -12.00361 -11.83929 -11.61607 -11.30729 -11.22925 -11.02625 -10.84207 -9.96743 -9.71363 -9.26800 -8.88794 -7.89124 -5.22312 0.35629 0.83387 1.38619 1.43958 1.48608 1.54119 1.75687 2.16617 2.32169 2.49850 3.30245 3.40389 3.55114 3.90957 4.01130 4.06446 4.17088 4.19553 4.27335 4.42116 4.49351 4.57220 4.72167 4.74129 4.83456 4.85507 5.02068 5.07211 5.20877 5.34924 5.39205 5.52142 5.58204 5.74685 5.94104 6.29443 6.36576 6.91537 7.07803 7.62510 8.59095 9.28989 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.031778 B = 0.002357 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.888125 B =11877.784341 C =12167.473367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.604 5.604 3 C 0.131 3.869 4 C 0.136 3.864 5 H 0.064 0.936 6 C -0.136 4.136 7 C 0.159 3.841 8 N -0.628 5.628 9 C -0.229 4.229 10 H 0.090 0.910 11 C -0.073 4.073 12 N -0.958 5.958 13 Si 0.979 3.021 14 H -0.278 1.278 15 H -0.297 1.297 16 H -0.272 1.272 17 C 0.579 3.421 18 O -0.566 6.566 19 C -0.050 4.050 20 C -0.098 4.098 21 C -0.204 4.204 22 Br -0.028 7.028 23 C 0.088 3.912 24 N -0.517 5.517 25 H 0.442 0.558 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.027 0.973 34 H 0.021 0.979 35 H 0.247 0.753 36 H 0.137 0.863 37 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.565 -21.638 7.874 30.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.336 5.336 3 C 0.007 3.993 4 C 0.029 3.971 5 H 0.081 0.919 6 C -0.174 4.174 7 C 0.033 3.967 8 N -0.354 5.354 9 C -0.358 4.358 10 H 0.107 0.893 11 C -0.266 4.266 12 N -0.607 5.607 13 Si 0.807 3.193 14 H -0.204 1.204 15 H -0.224 1.224 16 H -0.198 1.198 17 C 0.369 3.631 18 O -0.444 6.444 19 C -0.164 4.164 20 C -0.126 4.126 21 C -0.289 4.289 22 Br 0.056 6.944 23 C -0.053 4.053 24 N -0.122 5.122 25 H 0.292 0.708 26 H 0.109 0.891 27 H 0.118 0.882 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.038 0.962 35 H 0.056 0.944 36 H 0.155 0.845 37 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -19.796 -21.812 7.896 30.496 hybrid contribution 0.792 1.765 0.029 1.935 sum -19.004 -20.047 7.925 28.737 Atomic orbital electron populations 1.22513 0.77462 1.05697 1.03672 1.47667 1.08231 1.04781 1.72900 1.21450 0.96959 0.83942 0.96935 1.22675 0.92025 0.87836 0.94565 0.91897 1.23573 0.99174 0.95973 0.98716 1.22023 0.97389 0.88979 0.88263 1.46270 1.34234 1.33986 1.20956 1.19400 1.15070 1.03150 0.98140 0.89279 1.25696 1.00583 1.02315 0.97963 1.70036 1.30708 1.41581 1.18406 0.85148 0.77645 0.79070 0.77458 1.20401 1.22377 1.19752 1.17426 0.86409 0.82856 0.76403 1.90866 1.15177 1.86872 1.51531 1.19964 0.85163 0.93669 1.17592 1.21229 0.99389 0.89937 1.02008 1.21134 0.96700 0.91122 1.19935 1.96615 1.98768 1.00754 1.98252 1.22585 1.00157 0.81855 1.00713 1.43095 1.07843 1.08778 1.52513 0.70842 0.89112 0.88189 0.89320 0.89061 0.92535 0.91148 0.91234 0.95415 0.96159 0.94435 0.84461 0.75862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.59 8.85 127.77 1.13 1.73 16 2 N -0.60 -15.36 2.76 -851.51 -2.35 -17.72 16 3 C 0.13 4.44 5.38 86.38 0.46 4.91 16 4 C 0.14 5.40 4.59 45.09 0.21 5.60 16 5 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 6 C -0.14 -5.73 7.20 31.25 0.23 -5.51 16 7 C 0.16 8.22 7.39 86.48 0.64 8.86 16 8 N -0.63 -33.07 3.57 -694.11 -2.48 -35.55 16 9 C -0.23 -13.01 10.51 84.03 0.88 -12.13 16 10 H 0.09 4.69 7.83 -2.91 -0.02 4.67 16 11 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 12 N -0.96 -60.43 11.52 21.65 0.25 -60.18 16 13 Si 0.98 46.79 29.55 68.60 2.03 48.81 16 14 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 15 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 17 C 0.58 17.58 7.23 86.44 0.62 18.20 16 18 O -0.57 -23.20 14.50 -4.35 -0.06 -23.27 16 19 C -0.05 -1.15 6.62 40.35 0.27 -0.88 16 20 C -0.10 -2.37 10.64 22.58 0.24 -2.13 16 21 C -0.20 -3.69 6.53 22.03 0.14 -3.54 16 22 Br -0.03 -0.47 34.08 -20.37 -0.69 -1.16 16 23 C 0.09 0.96 11.86 83.48 0.99 1.95 16 24 N -0.52 -6.34 5.04 -183.54 -0.93 -7.26 16 25 H 0.44 2.42 4.98 -92.71 -0.46 1.96 16 26 H 0.09 0.57 7.56 -2.39 -0.02 0.55 16 27 H 0.10 1.11 8.04 -2.39 -0.02 1.09 16 28 H 0.09 0.77 5.48 -2.39 -0.01 0.76 16 29 H 0.09 2.68 8.12 -2.38 -0.02 2.66 16 30 H 0.06 2.40 7.33 -2.39 -0.02 2.38 16 31 H 0.07 3.29 6.22 -2.39 -0.01 3.27 16 32 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 33 H 0.03 1.62 7.40 -2.39 -0.02 1.60 16 34 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 36 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 37 H 0.22 0.42 8.06 -2.91 -0.02 0.40 16 Total: -1.00 -79.92 326.47 2.68 -77.24 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: 0.64 Total: 5.85 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 6.28 Total: 13.24 kcal Atomic # 7 Polarization: -115.21 SS G_CDS: -5.51 Total: -120.71 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.06 Total: -23.27 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.81 kcal Atomic # 35 Polarization: -0.47 SS G_CDS: -0.69 Total: -1.16 kcal Total: -79.92 2.68 -77.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085705270.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.385 kcal (2) G-P(sol) polarization free energy of solvation -79.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds