Wall clock time and date at job start Tue Mar 31 2020 23:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46505 * 119.99570 * 2 1 4 4 C 1.52995 * 109.47086 * 264.43102 * 3 2 1 5 5 H 1.08998 * 112.96773 * 293.60519 * 4 3 2 6 6 C 1.53948 * 113.77082 * 65.28913 * 4 3 2 7 7 C 1.53944 * 86.29056 * 137.90321 * 6 4 3 8 8 N 1.47582 * 113.76908 * 161.92843 * 4 3 2 9 9 C 1.36944 * 134.48999 * 41.07241 * 8 4 3 10 10 H 1.07997 * 119.99693 * 336.76684 * 9 8 4 11 11 C 1.38812 * 120.00062 * 156.77576 * 9 8 4 12 12 N 1.31611 * 119.99992 * 172.48690 * 11 9 8 13 13 Si 1.86797 * 119.99819 * 352.48472 * 11 9 8 14 14 H 1.48506 * 109.47185 * 84.55795 * 13 11 9 15 15 H 1.48505 * 109.47064 * 204.55680 * 13 11 9 16 16 H 1.48496 * 109.47347 * 324.55665 * 13 11 9 17 17 C 1.34777 * 120.00416 * 180.02562 * 2 1 3 18 18 O 1.21688 * 120.00101 * 178.92620 * 17 2 1 19 19 C 1.46669 * 119.99531 * 358.92169 * 17 2 1 20 20 C 1.37887 * 126.22235 * 170.83647 * 19 17 2 21 21 C 1.39882 * 107.09016 * 180.02562 * 20 19 17 22 22 Br 1.89108 * 126.06838 * 180.02562 * 21 20 19 23 23 C 1.35497 * 107.85658 * 0.02562 * 21 20 19 24 24 N 1.35607 * 108.85525 * 359.97438 * 23 21 20 25 25 H 0.97001 * 125.67600 * 179.73619 * 24 23 21 26 26 H 1.08997 * 109.47104 * 263.52434 * 1 2 3 27 27 H 1.09004 * 109.47407 * 23.52934 * 1 2 3 28 28 H 1.09000 * 109.47140 * 143.52779 * 1 2 3 29 29 H 1.08999 * 109.47442 * 24.43463 * 3 2 1 30 30 H 1.09007 * 109.46657 * 144.43492 * 3 2 1 31 31 H 1.09000 * 113.74121 * 252.25391 * 6 4 3 32 32 H 1.09004 * 113.74154 * 23.45179 * 6 4 3 33 33 H 1.09007 * 113.76356 * 90.69960 * 7 6 4 34 34 H 1.09002 * 113.76774 * 221.97825 * 7 6 4 35 35 H 0.97000 * 120.00271 * 179.97438 * 12 11 9 36 36 H 1.08000 * 126.45524 * 0.02794 * 20 19 17 37 37 H 1.07993 * 125.57541 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.5736 1.6405 -1.4356 5 1 3.2927 0.9516 -1.8788 6 6 1.3618 1.9377 -2.3375 7 6 2.1853 3.1174 -2.8852 8 7 2.9279 3.0627 -1.6085 9 6 3.6526 3.9667 -0.8785 10 1 3.7901 3.8178 0.1823 11 6 4.2102 5.0746 -1.5019 12 7 4.7787 6.0182 -0.7818 13 14 4.1536 5.2260 -3.3629 14 1 2.8537 5.8159 -3.7723 15 1 5.2613 6.1021 -3.8221 16 1 4.3009 3.8806 -3.9737 17 6 2.1389 -1.1672 -0.0005 18 8 3.3557 -1.1672 -0.0203 19 6 1.4058 -2.4372 0.0228 20 6 1.9465 -3.6935 -0.1519 21 6 0.8951 -4.6109 -0.0541 22 35 1.0388 -6.4900 -0.2111 23 6 -0.2445 -3.9141 0.1731 24 7 0.0527 -2.5919 0.2222 25 1 -0.5832 -1.8742 0.3689 26 1 -0.3633 -0.1159 1.0211 27 1 -0.3634 0.9422 -0.4103 28 1 -0.3633 -0.8264 -0.6109 29 1 1.5688 2.0513 0.4251 30 1 3.1031 1.1655 0.5978 31 1 1.1633 1.1607 -3.0758 32 1 0.4700 2.2402 -1.7887 33 1 2.7913 2.8637 -3.7552 34 1 1.6068 4.0311 -3.0217 35 1 5.1686 6.7922 -1.2174 36 1 2.9861 -3.9256 -0.3306 37 1 -1.2287 -4.3416 0.2951 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085705271.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:54 Heat of formation + Delta-G solvation = 76.275718 kcal Electronic energy + Delta-G solvation = -21573.274021 eV Core-core repulsion = 18206.975610 eV Total energy + Delta-G solvation = -3366.298411 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.63453 -40.70994 -39.53752 -36.76950 -34.43252 -33.33424 -31.26062 -31.01907 -30.29554 -29.09940 -27.73371 -25.30263 -24.75791 -22.82909 -21.70212 -21.15143 -20.91949 -18.96988 -18.57258 -17.53833 -17.28470 -17.04046 -16.80308 -15.92627 -15.54548 -15.06829 -15.01370 -14.84098 -14.62141 -14.28394 -14.00351 -13.83594 -13.75562 -13.71043 -13.40232 -13.12314 -12.71278 -12.50972 -12.04991 -12.00064 -11.84014 -11.74059 -11.36229 -11.28422 -11.08016 -10.95513 -10.02333 -9.76110 -9.29173 -9.03473 -8.17023 -5.52383 0.32594 0.82476 1.27332 1.35246 1.37076 1.41846 1.70755 2.13566 2.28604 2.39739 2.99657 3.14176 3.48015 3.69282 3.97461 4.03971 4.11125 4.18114 4.19919 4.36250 4.43403 4.53671 4.60498 4.67408 4.71775 4.82609 4.86569 4.91005 4.98849 5.15108 5.34208 5.44993 5.51182 5.57832 6.15643 6.25820 6.33745 6.51928 7.00636 7.42502 8.26071 9.04192 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.032511 B = 0.002352 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.041342 B =11902.862953 C =12003.759525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.600 5.600 3 C 0.136 3.864 4 C 0.124 3.876 5 H 0.030 0.970 6 C -0.108 4.108 7 C 0.083 3.917 8 N -0.641 5.641 9 C -0.218 4.218 10 H 0.062 0.938 11 C -0.046 4.046 12 N -0.970 5.970 13 Si 0.950 3.050 14 H -0.266 1.266 15 H -0.308 1.308 16 H -0.260 1.260 17 C 0.578 3.422 18 O -0.576 6.576 19 C -0.051 4.051 20 C -0.097 4.097 21 C -0.204 4.204 22 Br -0.027 7.027 23 C 0.089 3.911 24 N -0.517 5.517 25 H 0.443 0.557 26 H 0.089 0.911 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.042 0.958 34 H 0.058 0.942 35 H 0.261 0.739 36 H 0.137 0.863 37 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.036 -26.064 0.577 33.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.332 5.332 3 C 0.012 3.988 4 C 0.018 3.982 5 H 0.048 0.952 6 C -0.146 4.146 7 C -0.041 4.041 8 N -0.370 5.370 9 C -0.346 4.346 10 H 0.080 0.920 11 C -0.239 4.239 12 N -0.618 5.618 13 Si 0.778 3.222 14 H -0.192 1.192 15 H -0.236 1.236 16 H -0.185 1.185 17 C 0.369 3.631 18 O -0.456 6.456 19 C -0.164 4.164 20 C -0.125 4.125 21 C -0.289 4.289 22 Br 0.056 6.944 23 C -0.052 4.052 24 N -0.123 5.123 25 H 0.294 0.706 26 H 0.107 0.893 27 H 0.124 0.876 28 H 0.111 0.889 29 H 0.116 0.884 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.126 0.874 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.155 0.845 37 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -20.277 -26.215 0.666 33.148 hybrid contribution 0.996 1.344 -0.569 1.767 sum -19.281 -24.871 0.097 31.469 Atomic orbital electron populations 1.22633 0.77212 1.06123 1.03700 1.47691 1.08375 1.04590 1.72511 1.21333 0.96546 0.84245 0.96698 1.22689 0.94814 0.85504 0.95243 0.95248 1.23411 0.96459 0.96557 0.98182 1.23076 0.92844 0.98956 0.89193 1.46742 1.60638 1.06466 1.23144 1.18639 1.24319 1.00561 0.91075 0.92008 1.25798 0.98160 0.97679 1.02264 1.69868 1.43944 1.11320 1.36630 0.85771 0.77197 0.77655 0.81528 1.19196 1.23619 1.18492 1.17480 0.86380 0.83018 0.76267 1.90863 1.15083 1.87213 1.52413 1.19900 0.84583 0.93609 1.18332 1.21231 0.99355 0.89953 1.02001 1.21136 0.96281 0.91256 1.20207 1.96621 1.98752 1.01254 1.97745 1.22607 1.00175 0.81975 1.00434 1.43215 1.06854 1.08948 1.53297 0.70637 0.89322 0.87606 0.88912 0.88426 0.93793 0.89324 0.87350 0.94034 0.92340 0.92997 0.84470 0.75807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 8.57 127.77 1.09 1.60 16 2 N -0.60 -14.75 2.78 -851.52 -2.36 -17.12 16 3 C 0.14 4.57 5.22 86.38 0.45 5.02 16 4 C 0.12 4.75 4.53 45.09 0.20 4.96 16 5 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 6 C -0.11 -3.12 7.32 31.25 0.23 -2.89 16 7 C 0.08 3.26 5.81 86.44 0.50 3.76 16 8 N -0.64 -30.55 3.29 -690.93 -2.28 -32.83 16 9 C -0.22 -12.70 10.97 84.03 0.92 -11.78 16 10 H 0.06 3.92 8.06 -2.91 -0.02 3.90 16 11 C -0.05 -2.75 5.50 84.86 0.47 -2.29 16 12 N -0.97 -62.75 13.97 21.65 0.30 -62.45 16 13 Si 0.95 47.63 25.24 68.60 1.73 49.36 16 14 H -0.27 -12.39 7.03 99.48 0.70 -11.69 16 15 H -0.31 -15.73 7.11 99.48 0.71 -15.03 16 16 H -0.26 -12.50 5.76 99.48 0.57 -11.93 16 17 C 0.58 17.18 7.60 86.44 0.66 17.84 16 18 O -0.58 -23.51 16.58 -4.31 -0.07 -23.59 16 19 C -0.05 -1.12 6.65 40.35 0.27 -0.85 16 20 C -0.10 -2.27 10.65 22.58 0.24 -2.03 16 21 C -0.20 -3.51 6.53 22.03 0.14 -3.37 16 22 Br -0.03 -0.44 34.08 -20.37 -0.69 -1.14 16 23 C 0.09 0.90 11.86 83.48 0.99 1.89 16 24 N -0.52 -5.85 5.07 -183.55 -0.93 -6.78 16 25 H 0.44 2.01 4.89 -92.71 -0.45 1.55 16 26 H 0.09 0.55 7.69 -2.39 -0.02 0.53 16 27 H 0.11 1.00 6.67 -2.38 -0.02 0.99 16 28 H 0.09 0.62 5.27 -2.39 -0.01 0.61 16 29 H 0.10 3.07 8.03 -2.39 -0.02 3.05 16 30 H 0.04 1.81 7.61 -2.38 -0.02 1.79 16 31 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.11 2.49 6.93 -2.38 -0.02 2.47 16 33 H 0.04 1.68 6.36 -2.38 -0.02 1.66 16 34 H 0.06 2.27 7.35 -2.39 -0.02 2.25 16 35 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 36 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 37 H 0.23 0.24 8.06 -2.91 -0.02 0.21 16 Total: -1.00 -82.47 321.68 2.38 -80.09 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: 0.51 Total: 2.59 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 6.17 Total: 11.87 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -5.27 Total: -119.18 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.07 Total: -23.59 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 1.73 Total: 49.36 kcal Atomic # 35 Polarization: -0.44 SS G_CDS: -0.69 Total: -1.14 kcal Total: -82.47 2.38 -80.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085705271.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.363 kcal (2) G-P(sol) polarization free energy of solvation -82.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds