Wall clock time and date at job start Tue Mar 31 2020 23:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.99883 * 2 1 4 4 C 1.54323 * 109.88146 * 238.90289 * 2 1 3 5 5 H 1.09008 * 110.87343 * 336.82090 * 4 2 1 6 6 N 1.46502 * 110.72261 * 100.02481 * 4 2 1 7 7 C 1.34768 * 120.00139 * 199.97644 * 6 4 2 8 8 O 1.21697 * 120.00046 * 0.02562 * 7 6 4 9 9 C 1.46674 * 119.99967 * 179.97438 * 7 6 4 10 10 C 1.37885 * 126.22538 * 180.02562 * 9 7 6 11 11 C 1.39875 * 107.09375 * 180.02562 * 10 9 7 12 12 Br 1.89103 * 126.07409 * 179.97438 * 11 10 9 13 13 C 1.35500 * 107.85199 * 0.02562 * 11 10 9 14 14 N 1.35600 * 108.85993 * 359.97438 * 13 11 10 15 15 H 0.96994 * 125.68045 * 179.97438 * 14 13 11 16 16 C 1.55154 * 102.94319 * 218.38914 * 4 2 1 17 17 C 1.54909 * 101.58174 * 35.50223 * 16 4 2 18 18 N 1.47020 * 109.88237 * 121.09313 * 2 1 3 19 19 C 1.36934 * 125.65024 * 298.32096 * 18 2 1 20 20 H 1.07997 * 119.99927 * 0.02562 * 19 18 2 21 21 C 1.38813 * 119.99952 * 180.02562 * 19 18 2 22 22 N 1.31616 * 120.00330 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99904 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46858 * 59.99921 * 23 21 19 25 25 H 1.48501 * 109.46964 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46753 * 300.00395 * 23 21 19 27 27 H 1.09005 * 109.46953 * 181.09787 * 1 2 3 28 28 H 1.09002 * 109.46821 * 301.09836 * 1 2 3 29 29 H 1.08998 * 109.47247 * 61.09793 * 1 2 3 30 30 H 0.96997 * 119.99239 * 19.97409 * 6 4 2 31 31 H 1.08004 * 126.45646 * 359.75925 * 10 9 7 32 32 H 1.08005 * 125.57195 * 180.02562 * 13 11 10 33 33 H 1.09000 * 111.00407 * 153.57338 * 16 4 2 34 34 H 1.08998 * 111.00460 * 277.38980 * 16 4 2 35 35 H 1.09004 * 110.36980 * 81.82909 * 17 16 4 36 36 H 1.09000 * 110.36882 * 204.15074 * 17 16 4 37 37 H 0.96994 * 120.00572 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2427 5 1 1.3064 -1.4460 -1.6211 6 7 2.4554 0.1960 -2.2876 7 6 2.5558 -0.2161 -3.5668 8 8 2.3132 -1.3735 -3.8541 9 6 2.9563 0.7307 -4.6130 10 6 3.0987 0.4496 -5.9553 11 6 3.4932 1.6351 -6.5841 12 35 3.8404 1.8543 -8.4300 13 6 3.5834 2.5983 -5.6354 14 7 3.2594 2.0612 -4.4332 15 1 3.2443 2.5355 -3.5872 16 6 3.2876 -1.5143 -0.6924 17 6 2.8145 -1.8794 0.7368 18 7 2.0300 -0.7140 1.1839 19 6 1.8050 -0.3555 2.4862 20 1 1.2143 0.5202 2.7109 21 6 2.3362 -1.1177 3.5176 22 7 3.0566 -2.1847 3.2439 23 14 2.0287 -0.6291 5.2942 24 1 0.5681 -0.6308 5.5623 25 1 2.6995 -1.5984 6.1974 26 1 2.5745 0.7309 5.5350 27 1 -0.3633 -1.0275 0.0197 28 1 -0.3633 0.5308 0.8800 29 1 -0.3634 0.4967 -0.8996 30 1 2.6484 1.1186 -2.0586 31 1 2.9401 -0.5070 -6.4310 32 1 3.8663 3.6262 -5.8085 33 1 3.4851 -2.4111 -1.2796 34 1 4.1655 -0.8691 -0.6611 35 1 2.1886 -2.7715 0.7129 36 1 3.6716 -2.0338 1.3922 37 1 3.4281 -2.7171 3.9645 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088718848.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:47 Heat of formation + Delta-G solvation = 37.942766 kcal Electronic energy + Delta-G solvation = -21368.408905 eV Core-core repulsion = 18000.448253 eV Total energy + Delta-G solvation = -3367.960653 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.63179 -39.38186 -37.52487 -34.22855 -32.61733 -32.00074 -30.49199 -30.33650 -29.33063 -28.30859 -25.06300 -24.06997 -22.78917 -20.68167 -20.44463 -20.17127 -20.04164 -18.64761 -16.86619 -16.18158 -15.76777 -15.31877 -14.82994 -14.33548 -14.10244 -13.93000 -13.90634 -13.50249 -13.03772 -12.96795 -12.83150 -12.19722 -12.06549 -11.65087 -11.34227 -11.21405 -10.92051 -10.89476 -10.62771 -10.53665 -10.44769 -10.17648 -9.99164 -9.82617 -9.63029 -9.15077 -8.86448 -8.70904 -8.50779 -6.94655 -5.71237 -3.14799 1.19814 1.50325 2.12215 2.77142 3.18286 3.29295 3.35563 3.40338 3.41717 4.42407 4.58840 4.68881 4.88330 5.16031 5.35059 5.36195 5.45352 5.55146 5.60535 5.72850 6.02437 6.12690 6.14569 6.20958 6.25854 6.32387 6.44619 6.52091 6.65240 6.77749 6.88666 7.01637 7.44861 7.54809 7.55591 7.79238 8.18717 8.29180 9.14232 9.75063 10.38463 11.31933 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.039137 B = 0.002129 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.267364 B =13147.050980 C =13304.578816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 H 0.034 0.966 4 C 0.136 3.864 5 H 0.095 0.905 6 N -0.714 5.714 7 C 0.586 3.414 8 O -0.524 6.524 9 C -0.035 4.035 10 C -0.083 4.083 11 C -0.182 4.182 12 Br -0.030 7.030 13 C 0.060 3.940 14 N -0.529 5.529 15 H 0.424 0.576 16 C -0.153 4.153 17 C 0.152 3.848 18 N -0.595 5.595 19 C -0.224 4.224 20 H 0.077 0.923 21 C -0.009 4.009 22 N -0.920 5.920 23 Si 0.915 3.085 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.037 0.963 30 H 0.391 0.609 31 H 0.157 0.843 32 H 0.181 0.819 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.016 0.984 36 H 0.110 0.890 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.087 11.712 -21.473 24.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.051 0.949 4 C 0.032 3.968 5 H 0.113 0.887 6 N -0.364 5.364 7 C 0.372 3.628 8 O -0.400 6.400 9 C -0.148 4.148 10 C -0.110 4.110 11 C -0.268 4.268 12 Br 0.054 6.946 13 C -0.080 4.080 14 N -0.126 5.126 15 H 0.263 0.737 16 C -0.192 4.192 17 C 0.027 3.973 18 N -0.320 5.320 19 C -0.352 4.352 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.568 5.568 23 Si 0.745 3.255 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.212 1.212 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.224 0.776 31 H 0.175 0.825 32 H 0.198 0.802 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.034 0.966 36 H 0.127 0.873 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.066 10.872 -21.909 24.545 hybrid contribution -0.198 0.958 1.794 2.043 sum 1.868 11.830 -20.115 23.410 Atomic orbital electron populations 1.22253 0.97773 1.01613 0.99919 1.20966 0.92667 0.94616 0.86924 0.94888 1.22225 0.97865 0.90643 0.86090 0.88687 1.45972 1.69492 1.13789 1.07099 1.16930 0.77784 0.86747 0.81330 1.90864 1.50014 1.17369 1.81759 1.20615 1.14319 0.84099 0.95811 1.21187 1.00894 0.98215 0.90686 1.20991 1.17442 0.96971 0.91381 1.96617 1.95038 1.97691 1.05290 1.21863 1.03649 0.99122 0.83364 1.42076 1.51751 1.09115 1.09649 0.73738 1.23409 0.96551 0.99462 0.99828 1.21969 0.97423 0.88399 0.89467 1.44480 1.59254 1.28239 1.00006 1.18958 1.27458 1.08287 0.80472 0.90520 1.24796 1.00248 0.97315 0.98099 1.69774 1.38847 1.17792 1.30405 0.86158 0.77687 0.77424 0.84216 1.21178 1.21537 1.21188 0.92766 0.92644 0.94368 0.77562 0.82522 0.80227 0.91739 0.92047 0.96625 0.87255 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.14 37.16 0.34 -2.44 16 2 C 0.16 2.99 3.48 -66.95 -0.23 2.75 16 3 H 0.03 0.60 7.69 -51.93 -0.40 0.21 16 4 C 0.14 2.36 2.76 -66.10 -0.18 2.18 16 5 H 0.10 1.78 7.41 -51.92 -0.38 1.40 16 6 N -0.71 -9.79 5.20 -53.33 -0.28 -10.07 16 7 C 0.59 8.58 7.78 -12.86 -0.10 8.48 16 8 O -0.52 -9.68 16.61 5.19 0.09 -9.59 16 9 C -0.03 -0.40 7.06 -81.98 -0.58 -0.98 16 10 C -0.08 -0.97 10.63 -39.10 -0.42 -1.39 16 11 C -0.18 -1.80 6.53 -39.95 -0.26 -2.06 16 12 Br -0.03 -0.27 34.08 -68.01 -2.32 -2.59 16 13 C 0.06 0.45 11.86 -16.86 -0.20 0.25 16 14 N -0.53 -4.20 6.00 -9.36 -0.06 -4.26 16 15 H 0.42 2.15 8.19 -40.82 -0.33 1.81 16 16 C -0.15 -2.95 6.77 -24.58 -0.17 -3.11 16 17 C 0.15 3.62 5.89 -2.53 -0.01 3.61 16 18 N -0.59 -14.34 3.13 -162.57 -0.51 -14.85 16 19 C -0.22 -5.92 9.89 -15.06 -0.15 -6.07 16 20 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 21 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 22 N -0.92 -26.15 10.09 55.49 0.56 -25.59 16 23 Si 0.91 21.45 29.55 -169.99 -5.02 16.42 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.39 4.18 7.44 -40.82 -0.30 3.87 16 31 H 0.16 1.87 8.06 -52.48 -0.42 1.44 16 32 H 0.18 0.77 8.06 -52.48 -0.42 0.35 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.11 2.92 5.87 -51.93 -0.30 2.62 16 37 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 330.84 15.07 4.99 4.99 Total: -1.00 -31.45 330.84 -9.26 -40.71 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -4.65 Total: 3.92 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -2.06 Total: 0.90 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.28 Total: -54.76 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 35 Polarization: -0.27 SS G_CDS: -2.32 Total: -2.59 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.45 -9.26 -40.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088718848.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.650 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds