Wall clock time and date at job start Tue Mar 31 2020 23:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.99883 * 2 1 4 4 C 1.54323 * 109.88146 * 238.90289 * 2 1 3 5 5 H 1.09008 * 110.87343 * 336.82090 * 4 2 1 6 6 N 1.46502 * 110.72261 * 100.02481 * 4 2 1 7 7 C 1.34768 * 120.00139 * 199.97644 * 6 4 2 8 8 O 1.21697 * 120.00046 * 0.02562 * 7 6 4 9 9 C 1.46674 * 119.99967 * 179.97438 * 7 6 4 10 10 C 1.37885 * 126.22538 * 180.02562 * 9 7 6 11 11 C 1.39875 * 107.09375 * 180.02562 * 10 9 7 12 12 Br 1.89103 * 126.07409 * 179.97438 * 11 10 9 13 13 C 1.35500 * 107.85199 * 0.02562 * 11 10 9 14 14 N 1.35600 * 108.85993 * 359.97438 * 13 11 10 15 15 H 0.96994 * 125.68045 * 179.97438 * 14 13 11 16 16 C 1.55154 * 102.94319 * 218.38914 * 4 2 1 17 17 C 1.54909 * 101.58174 * 35.50223 * 16 4 2 18 18 N 1.47020 * 109.88237 * 121.09313 * 2 1 3 19 19 C 1.36934 * 125.65024 * 298.32096 * 18 2 1 20 20 H 1.07997 * 119.99927 * 0.02562 * 19 18 2 21 21 C 1.38813 * 119.99952 * 180.02562 * 19 18 2 22 22 N 1.31616 * 120.00330 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99904 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46858 * 59.99921 * 23 21 19 25 25 H 1.48501 * 109.46964 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46753 * 300.00395 * 23 21 19 27 27 H 1.09005 * 109.46953 * 181.09787 * 1 2 3 28 28 H 1.09002 * 109.46821 * 301.09836 * 1 2 3 29 29 H 1.08998 * 109.47247 * 61.09793 * 1 2 3 30 30 H 0.96997 * 119.99239 * 19.97409 * 6 4 2 31 31 H 1.08004 * 126.45646 * 359.75925 * 10 9 7 32 32 H 1.08005 * 125.57195 * 180.02562 * 13 11 10 33 33 H 1.09000 * 111.00407 * 153.57338 * 16 4 2 34 34 H 1.08998 * 111.00460 * 277.38980 * 16 4 2 35 35 H 1.09004 * 110.36980 * 81.82909 * 17 16 4 36 36 H 1.09000 * 110.36882 * 204.15074 * 17 16 4 37 37 H 0.96994 * 120.00572 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2427 5 1 1.3064 -1.4460 -1.6211 6 7 2.4554 0.1960 -2.2876 7 6 2.5558 -0.2161 -3.5668 8 8 2.3132 -1.3735 -3.8541 9 6 2.9563 0.7307 -4.6130 10 6 3.0987 0.4496 -5.9553 11 6 3.4932 1.6351 -6.5841 12 35 3.8404 1.8543 -8.4300 13 6 3.5834 2.5983 -5.6354 14 7 3.2594 2.0612 -4.4332 15 1 3.2443 2.5355 -3.5872 16 6 3.2876 -1.5143 -0.6924 17 6 2.8145 -1.8794 0.7368 18 7 2.0300 -0.7140 1.1839 19 6 1.8050 -0.3555 2.4862 20 1 1.2143 0.5202 2.7109 21 6 2.3362 -1.1177 3.5176 22 7 3.0566 -2.1847 3.2439 23 14 2.0287 -0.6291 5.2942 24 1 0.5681 -0.6308 5.5623 25 1 2.6995 -1.5984 6.1974 26 1 2.5745 0.7309 5.5350 27 1 -0.3633 -1.0275 0.0197 28 1 -0.3633 0.5308 0.8800 29 1 -0.3634 0.4967 -0.8996 30 1 2.6484 1.1186 -2.0586 31 1 2.9401 -0.5070 -6.4310 32 1 3.8663 3.6262 -5.8085 33 1 3.4851 -2.4111 -1.2796 34 1 4.1655 -0.8691 -0.6611 35 1 2.1886 -2.7715 0.7129 36 1 3.6716 -2.0338 1.3922 37 1 3.4281 -2.7171 3.9645 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088718848.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:47 Heat of formation + Delta-G solvation = 17.106776 kcal Electronic energy + Delta-G solvation = -21369.312422 eV Core-core repulsion = 18000.448253 eV Total energy + Delta-G solvation = -3368.864169 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.43853 -40.66233 -39.05339 -35.72228 -34.00420 -33.13401 -32.09096 -31.20646 -30.69216 -29.50801 -26.60877 -25.85721 -23.90127 -22.11328 -21.66064 -21.26964 -21.12751 -19.78450 -18.71120 -17.54313 -16.85229 -16.62433 -16.33058 -15.78610 -15.53552 -15.12088 -14.91975 -14.77992 -14.38513 -14.02067 -13.82209 -13.74357 -13.68022 -13.25956 -12.95394 -12.72860 -12.61616 -12.26688 -12.14680 -12.04420 -12.02456 -11.58583 -11.49469 -11.31906 -11.07687 -10.72732 -10.20466 -9.89698 -9.29756 -8.90976 -7.74995 -5.20328 0.32104 0.80798 1.37342 1.48504 1.51130 1.57365 1.89117 2.19357 2.22900 2.52081 3.35545 3.53147 3.80409 3.80994 3.92911 4.05463 4.17131 4.18363 4.47394 4.51657 4.60083 4.65071 4.79758 4.83461 4.91814 5.01724 5.08889 5.32030 5.33349 5.47293 5.50628 5.58696 5.59392 5.79645 6.28973 6.30069 6.48260 7.07372 7.10530 7.78444 8.41745 9.26735 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.039137 B = 0.002129 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.267364 B =13147.050980 C =13304.578816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.153 3.847 3 H 0.056 0.944 4 C 0.153 3.847 5 H 0.081 0.919 6 N -0.700 5.700 7 C 0.590 3.410 8 O -0.570 6.570 9 C -0.055 4.055 10 C -0.092 4.092 11 C -0.205 4.205 12 Br -0.025 7.025 13 C 0.094 3.906 14 N -0.513 5.513 15 H 0.440 0.560 16 C -0.139 4.139 17 C 0.157 3.843 18 N -0.613 5.613 19 C -0.227 4.227 20 H 0.087 0.913 21 C -0.069 4.069 22 N -0.951 5.951 23 Si 0.978 3.022 24 H -0.280 1.280 25 H -0.299 1.299 26 H -0.274 1.274 27 H 0.035 0.965 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.410 0.590 31 H 0.144 0.856 32 H 0.222 0.778 33 H 0.064 0.936 34 H 0.070 0.930 35 H -0.015 1.015 36 H 0.078 0.922 37 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.024 15.009 -22.487 27.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.046 3.954 3 H 0.073 0.927 4 C 0.048 3.952 5 H 0.100 0.900 6 N -0.351 5.351 7 C 0.378 3.622 8 O -0.449 6.449 9 C -0.169 4.169 10 C -0.120 4.120 11 C -0.291 4.291 12 Br 0.058 6.942 13 C -0.048 4.048 14 N -0.110 5.110 15 H 0.282 0.718 16 C -0.178 4.178 17 C 0.032 3.968 18 N -0.339 5.339 19 C -0.356 4.356 20 H 0.105 0.895 21 C -0.261 4.261 22 N -0.601 5.601 23 Si 0.807 3.193 24 H -0.206 1.206 25 H -0.225 1.225 26 H -0.200 1.200 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.246 0.754 31 H 0.161 0.839 32 H 0.239 0.761 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.003 0.997 36 H 0.096 0.904 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.989 14.242 -22.928 27.064 hybrid contribution -0.175 -0.011 1.986 1.994 sum 1.814 14.231 -20.942 25.385 Atomic orbital electron populations 1.22143 0.96477 1.00804 1.01304 1.21177 0.93533 0.95101 0.85577 0.92655 1.21769 0.96309 0.90758 0.86372 0.90047 1.45659 1.69244 1.14061 1.06118 1.17240 0.76678 0.86598 0.81673 1.90844 1.52060 1.19537 1.82449 1.20008 1.16853 0.85361 0.94689 1.21250 1.00953 0.98651 0.91173 1.21121 1.18764 0.96931 0.92242 1.96623 1.95024 1.97561 1.04962 1.22506 0.99997 1.00113 0.82174 1.42022 1.50619 1.07658 1.10729 0.71817 1.23200 0.97626 1.00026 0.96984 1.21672 0.95757 0.87851 0.91555 1.44710 1.59733 1.28550 1.00858 1.19352 1.26452 1.08140 0.81674 0.89546 1.25615 1.00829 0.97713 1.01954 1.70029 1.40267 1.18989 1.30832 0.85154 0.77493 0.77135 0.79544 1.20634 1.22499 1.20018 0.94628 0.93238 0.90988 0.75370 0.83861 0.76107 0.91698 0.91129 0.99714 0.90444 0.94446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.01 9.14 71.98 0.66 -4.35 16 2 C 0.15 5.60 3.48 45.34 0.16 5.76 16 3 H 0.06 1.83 7.69 -2.39 -0.02 1.81 16 4 C 0.15 5.20 2.76 46.18 0.13 5.33 16 5 H 0.08 3.05 7.41 -2.38 -0.02 3.03 16 6 N -0.70 -17.73 5.20 -440.87 -2.29 -20.02 16 7 C 0.59 16.56 7.78 86.45 0.67 17.24 16 8 O -0.57 -21.15 16.61 -4.34 -0.07 -21.22 16 9 C -0.06 -1.19 7.06 40.35 0.28 -0.90 16 10 C -0.09 -2.06 10.63 22.58 0.24 -1.82 16 11 C -0.21 -3.54 6.53 22.03 0.14 -3.39 16 12 Br -0.03 -0.41 34.08 -20.37 -0.69 -1.10 16 13 C 0.09 1.03 11.86 83.48 0.99 2.02 16 14 N -0.51 -6.22 6.00 -183.54 -1.10 -7.32 16 15 H 0.44 2.47 8.19 -92.71 -0.76 1.71 16 16 C -0.14 -5.37 6.77 31.99 0.22 -5.16 16 17 C 0.16 7.73 5.89 86.85 0.51 8.24 16 18 N -0.61 -29.65 3.13 -668.25 -2.09 -31.74 16 19 C -0.23 -12.00 9.89 84.03 0.83 -11.17 16 20 H 0.09 4.29 7.83 -2.91 -0.02 4.27 16 21 C -0.07 -3.78 5.49 84.86 0.47 -3.32 16 22 N -0.95 -55.89 10.09 21.65 0.22 -55.67 16 23 Si 0.98 44.37 29.55 68.60 2.03 46.40 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 25 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.05 1.72 8.04 -2.39 -0.02 1.70 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.93 16 30 H 0.41 7.35 7.44 -92.71 -0.69 6.66 16 31 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 32 H 0.22 0.58 8.06 -2.91 -0.02 0.56 16 33 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 35 H -0.02 -0.82 8.14 -2.39 -0.02 -0.84 16 36 H 0.08 4.33 5.87 -2.39 -0.01 4.32 16 37 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -70.73 330.84 0.96 -69.76 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -0.33 Total: 12.45 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 5.30 Total: 8.46 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -5.26 Total: -114.76 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.07 Total: -21.22 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 35 Polarization: -0.41 SS G_CDS: -0.69 Total: -1.10 kcal Total: -70.73 0.96 -69.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088718848.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.871 kcal (2) G-P(sol) polarization free energy of solvation -70.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds