Wall clock time and date at job start Tue Mar 31 2020 23:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00029 * 2 1 4 4 H 1.48494 * 109.47479 * 240.00137 * 3 2 1 5 5 H 1.48498 * 109.46993 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47367 * 119.99665 * 3 2 1 7 7 C 1.38810 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00171 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00059 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00129 * 179.97438 * 9 7 2 11 11 C 1.53773 * 113.61450 * 154.99723 * 10 9 7 12 12 C 1.53778 * 87.08314 * 89.11565 * 11 10 9 13 13 C 1.53005 * 113.61626 * 139.98007 * 12 11 10 14 14 N 1.46502 * 109.46831 * 176.53457 * 13 12 11 15 15 C 1.34777 * 119.99568 * 180.02562 * 14 13 12 16 16 O 1.21698 * 120.00038 * 359.97438 * 15 14 13 17 17 C 1.46676 * 120.00148 * 179.97438 * 15 14 13 18 18 C 1.37879 * 126.22725 * 179.97438 * 17 15 14 19 19 C 1.39884 * 107.09039 * 179.74116 * 18 17 15 20 20 Br 1.89100 * 126.07154 * 180.23137 * 19 18 17 21 21 C 1.35501 * 107.85269 * 0.22794 * 19 18 17 22 22 N 1.35601 * 108.85791 * 0.02562 * 21 19 18 23 23 H 0.97003 * 125.67274 * 179.97438 * 22 21 19 24 24 C 1.53786 * 87.17195 * 25.39256 * 12 11 10 25 25 H 0.96998 * 120.00452 * 359.97438 * 1 2 3 26 26 H 0.97002 * 119.99380 * 359.97438 * 9 7 2 27 27 H 1.09002 * 112.84961 * 23.80332 * 10 9 7 28 28 H 1.09001 * 113.61870 * 334.56641 * 11 10 9 29 29 H 1.09001 * 113.61862 * 203.66368 * 11 10 9 30 30 H 1.08998 * 113.61754 * 270.80363 * 12 11 10 31 31 H 1.08993 * 109.46986 * 56.53201 * 13 12 11 32 32 H 1.09003 * 109.47017 * 296.53238 * 13 12 11 33 33 H 0.96997 * 120.00661 * 359.97438 * 14 13 12 34 34 H 1.08002 * 126.45722 * 0.02562 * 18 17 15 35 35 H 1.08003 * 125.57198 * 180.02562 * 21 19 18 36 36 H 1.08995 * 113.61490 * 89.15457 * 24 12 11 37 37 H 1.09001 * 113.61392 * 220.06741 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.2603 -4.8287 0.5961 12 6 0.7205 -5.0791 -0.8219 13 6 0.6196 -6.5617 -1.1865 14 7 0.0211 -6.6978 -2.5167 15 6 -0.1676 -7.9217 -3.0486 16 8 0.1595 -8.9136 -2.4241 17 6 -0.7674 -8.0581 -4.3802 18 6 -1.0174 -9.2404 -5.0440 19 6 -1.5976 -8.9074 -6.2725 20 35 -2.1600 -10.1256 -7.6050 21 6 -1.6850 -7.5568 -6.3381 22 7 -1.1803 -7.0289 -5.1956 23 1 -1.1233 -6.0835 -4.9862 24 6 1.9979 -4.4015 -1.3456 25 1 -0.4851 0.8400 0.0004 26 1 0.3556 -2.3880 0.0005 27 1 3.0656 -3.5638 0.4059 28 1 0.4939 -4.5190 1.3066 29 1 1.8871 -5.6366 0.9736 30 1 -0.1910 -4.5251 -1.0464 31 1 -0.0031 -7.0744 -0.4536 32 1 1.6160 -7.0037 -1.1894 33 1 -0.2400 -5.9072 -3.0144 34 1 -0.8092 -10.2363 -4.6817 35 1 -2.0904 -6.9928 -7.1652 36 1 2.8267 -5.0923 -1.4998 37 1 1.8261 -3.7472 -2.2002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091127644.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:53 Heat of formation + Delta-G solvation = 16.672798 kcal Electronic energy + Delta-G solvation = -20473.255535 eV Core-core repulsion = 17104.372548 eV Total energy + Delta-G solvation = -3368.882988 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.44815 -40.61322 -39.66783 -36.10996 -35.03733 -33.26645 -32.12438 -31.18995 -30.17280 -28.35881 -26.44728 -25.75185 -24.07086 -22.95192 -21.39310 -21.18451 -20.35265 -19.57391 -19.24083 -17.17788 -17.00200 -16.65424 -16.62728 -15.89572 -15.62858 -15.30769 -15.08625 -14.79855 -14.66799 -14.48300 -13.84469 -13.76989 -13.70176 -13.29648 -12.93944 -12.92801 -12.63850 -12.20807 -12.08859 -12.06390 -11.67840 -11.49635 -11.30573 -11.12183 -10.93914 -10.79597 -10.25773 -9.92209 -9.32360 -9.00352 -7.96108 -5.24084 0.29332 0.78109 1.34142 1.48103 1.49993 1.56090 1.92768 2.20143 2.20704 2.55315 3.36542 3.66355 3.73305 3.76895 3.90052 4.01887 4.13269 4.15514 4.31520 4.38109 4.50279 4.71601 4.75993 4.80469 4.93073 4.98892 5.09679 5.19551 5.30990 5.33374 5.43024 5.50790 5.53367 5.65062 6.23954 6.27689 6.43770 7.02575 7.33020 8.10160 8.32390 9.26812 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.022145 B = 0.001904 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.073076 B =14703.492662 C =15684.380674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.971 3.029 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.280 1.280 7 C -0.243 4.243 8 H 0.076 0.924 9 N -0.719 5.719 10 C 0.143 3.857 11 C -0.135 4.135 12 C -0.102 4.102 13 C 0.140 3.860 14 N -0.713 5.713 15 C 0.587 3.413 16 O -0.571 6.571 17 C -0.059 4.059 18 C -0.092 4.092 19 C -0.204 4.204 20 Br -0.025 7.025 21 C 0.089 3.911 22 N -0.515 5.515 23 H 0.438 0.562 24 C -0.153 4.153 25 H 0.251 0.749 26 H 0.375 0.625 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.408 0.592 34 H 0.147 0.853 35 H 0.219 0.781 36 H 0.091 0.909 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.850 -19.330 -16.429 25.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.800 3.200 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.206 1.206 7 C -0.375 4.375 8 H 0.093 0.907 9 N -0.357 5.357 10 C 0.033 3.967 11 C -0.174 4.174 12 C -0.120 4.120 13 C 0.017 3.983 14 N -0.364 5.364 15 C 0.375 3.625 16 O -0.451 6.451 17 C -0.173 4.173 18 C -0.120 4.120 19 C -0.290 4.290 20 Br 0.059 6.941 21 C -0.052 4.052 22 N -0.113 5.113 23 H 0.280 0.720 24 C -0.193 4.193 25 H 0.060 0.940 26 H 0.207 0.793 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.124 0.876 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.243 0.757 34 H 0.164 0.836 35 H 0.235 0.765 36 H 0.109 0.891 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.617 -20.141 -16.317 26.328 hybrid contribution -0.054 2.001 0.295 2.023 sum -4.670 -18.139 -16.021 24.648 Atomic orbital electron populations 1.69787 1.06490 1.26141 1.59450 1.25518 0.96368 1.00959 1.03768 0.85250 0.77222 0.79363 0.78156 1.20394 1.22289 1.20584 1.19622 0.91499 0.85213 1.41138 0.90651 1.42284 1.05311 1.00498 1.87637 1.21423 0.95054 0.84921 0.95321 1.23349 1.00000 0.98679 0.95415 1.22497 0.98430 0.93452 0.97650 1.21377 0.98465 0.95816 0.82677 1.45821 1.63125 1.07532 1.19884 1.17187 0.77788 0.83420 0.84060 1.90831 1.53286 1.38594 1.62343 1.20151 1.13971 0.88859 0.94285 1.21259 1.00025 0.97686 0.93022 1.21137 1.15919 0.94231 0.97682 1.96626 1.89572 1.58836 1.49075 1.22493 0.99118 0.92538 0.91092 1.42065 1.45968 1.09399 1.13830 0.71983 1.23740 0.97271 0.99187 0.99146 0.94009 0.79311 0.92318 0.92340 0.87643 0.89801 0.91494 0.91020 0.75666 0.83560 0.76486 0.89100 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.04 13.06 21.65 0.28 -56.75 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 3 Si 0.97 44.62 29.55 68.60 2.03 46.65 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.24 -12.94 9.97 84.03 0.84 -12.11 16 8 H 0.08 3.87 7.83 -2.91 -0.02 3.84 16 9 N -0.72 -34.10 5.31 -320.18 -1.70 -35.80 16 10 C 0.14 5.16 4.57 45.58 0.21 5.37 16 11 C -0.14 -3.86 7.39 31.12 0.23 -3.63 16 12 C -0.10 -2.62 3.62 -10.26 -0.04 -2.66 16 13 C 0.14 3.20 5.50 86.38 0.47 3.68 16 14 N -0.71 -14.75 5.55 -467.07 -2.59 -17.35 16 15 C 0.59 14.48 7.79 86.45 0.67 15.16 16 16 O -0.57 -18.54 16.88 -4.34 -0.07 -18.62 16 17 C -0.06 -1.19 7.05 40.35 0.28 -0.90 16 18 C -0.09 -1.94 10.63 22.58 0.24 -1.70 16 19 C -0.20 -3.46 6.53 22.04 0.14 -3.32 16 20 Br -0.02 -0.39 34.08 -20.37 -0.69 -1.08 16 21 C 0.09 1.03 11.86 83.48 0.99 2.02 16 22 N -0.52 -6.41 6.00 -183.54 -1.10 -7.51 16 23 H 0.44 3.00 8.19 -92.71 -0.76 2.24 16 24 C -0.15 -4.47 7.44 31.18 0.23 -4.23 16 25 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 26 H 0.37 18.99 7.90 -92.71 -0.73 18.26 16 27 H 0.06 2.15 8.10 -2.39 -0.02 2.13 16 28 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.11 2.47 8.10 -2.39 -0.02 2.45 16 30 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 1.68 7.88 -2.39 -0.02 1.66 16 33 H 0.41 6.51 7.60 -92.71 -0.70 5.81 16 34 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 35 H 0.22 0.87 8.06 -2.91 -0.02 0.85 16 36 H 0.09 2.29 7.92 -2.39 -0.02 2.27 16 37 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -68.86 340.11 -0.18 -69.03 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: -1.07 Total: 27.38 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: 4.74 Total: -5.95 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -5.11 Total: -117.41 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.07 Total: -18.62 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 35 Polarization: -0.39 SS G_CDS: -0.69 Total: -1.08 kcal Total: -68.86 -0.18 -69.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091127644.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.706 kcal (2) G-P(sol) polarization free energy of solvation -68.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds