Wall clock time and date at job start Tue Mar 31 2020 23:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 119.99864 * 2 1 4 4 C 1.50692 * 109.47352 * 275.00255 * 3 2 1 5 5 H 1.07997 * 120.00184 * 359.97438 * 4 3 2 6 6 C 1.37882 * 120.00230 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00097 * 179.97438 * 6 4 3 8 8 Si 1.86795 * 119.99612 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.47470 * 90.00468 * 8 6 4 10 10 H 1.48503 * 109.47136 * 210.00059 * 8 6 4 11 11 H 1.48501 * 109.47399 * 330.00057 * 8 6 4 12 12 S 1.65599 * 120.00138 * 180.02562 * 2 1 3 13 13 O 1.42106 * 106.40227 * 156.45811 * 12 2 1 14 14 O 1.42100 * 106.40324 * 23.54325 * 12 2 1 15 15 C 1.76199 * 107.21905 * 270.00156 * 12 2 1 16 16 C 1.38217 * 119.98794 * 269.72569 * 15 12 2 17 17 C 1.38434 * 119.97486 * 179.70762 * 16 15 12 18 18 F 1.35099 * 120.02609 * 180.29864 * 17 16 15 19 19 C 1.38482 * 119.94546 * 0.54444 * 17 16 15 20 20 C 1.38174 * 119.97774 * 359.75005 * 19 17 16 21 21 C 1.50702 * 119.98839 * 180.02562 * 20 19 17 22 22 F 1.39905 * 109.46738 * 269.97673 * 21 20 19 23 23 F 1.39897 * 109.47022 * 29.97558 * 21 20 19 24 24 F 1.39898 * 109.47031 * 149.98246 * 21 20 19 25 25 C 1.38220 * 119.98739 * 90.00053 * 15 12 2 26 26 H 1.08996 * 109.47167 * 269.99576 * 1 2 3 27 27 H 1.09002 * 109.47465 * 30.00110 * 1 2 3 28 28 H 1.09005 * 109.46555 * 149.99757 * 1 2 3 29 29 H 1.09000 * 109.46580 * 35.00117 * 3 2 1 30 30 H 1.08998 * 109.46806 * 154.99595 * 3 2 1 31 31 H 0.97003 * 119.99938 * 180.02562 * 7 6 4 32 32 H 1.07997 * 120.01181 * 0.02562 * 16 15 12 33 33 H 1.08003 * 120.01142 * 179.77724 * 19 17 16 34 34 H 1.08006 * 119.97248 * 359.97438 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7658 -1.4153 5 1 1.9289 1.1936 -2.2331 6 6 3.0006 2.9505 -1.6663 7 7 3.1266 3.3839 -2.9015 8 14 3.7147 3.9397 -0.2519 9 1 5.1116 3.5042 0.0013 10 1 3.7018 5.3831 -0.6011 11 1 2.8983 3.7185 0.9687 12 16 2.2930 -1.4341 -0.0006 13 8 3.5760 -1.1565 -0.5450 14 8 1.4114 -2.4063 -0.5456 15 6 2.5538 -1.8866 1.6822 16 6 3.6955 -1.4702 2.3406 17 6 3.8972 -1.8207 3.6645 18 9 5.0099 -1.4092 4.3108 19 6 2.9600 -2.5979 4.3243 20 6 1.8223 -3.0181 3.6623 21 6 0.8019 -3.8634 4.3803 22 9 1.1159 -5.2164 4.2123 23 9 0.8112 -3.5482 5.7433 24 9 -0.4684 -3.6104 3.8516 25 6 1.6193 -2.6626 2.3417 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3632 -0.8900 -0.5139 29 1 1.6500 2.0042 0.5895 30 1 3.1857 1.1177 0.4344 31 1 3.5907 4.2172 -3.0781 32 1 4.4275 -0.8672 1.8239 33 1 3.1180 -2.8750 5.3561 34 1 0.7294 -2.9909 1.8252 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189949154.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:12 Heat of formation + Delta-G solvation = -229.352365 kcal Electronic energy + Delta-G solvation = -28027.446894 eV Core-core repulsion = 23166.757051 eV Total energy + Delta-G solvation = -4860.689844 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.050 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.54953 -49.33812 -48.06273 -47.99695 -39.63005 -36.98363 -35.84605 -35.49597 -32.71449 -32.48143 -31.35188 -28.52481 -26.68489 -25.36040 -23.94386 -22.77406 -22.03197 -19.80620 -18.87620 -18.86149 -18.22493 -17.23510 -17.13064 -16.96804 -16.80078 -16.65256 -16.04865 -15.99696 -15.49301 -14.88320 -14.78855 -14.43671 -14.40472 -14.17634 -14.14621 -13.95525 -13.69620 -13.32630 -13.17733 -13.15777 -12.73245 -12.64580 -12.46849 -12.25982 -11.93657 -11.70995 -11.48434 -11.38219 -11.00217 -10.80953 -10.58010 -10.34082 -10.12328 -9.63696 -9.44286 -8.67591 -8.30971 -6.16107 -4.16778 0.02449 0.35934 0.62506 2.16113 2.53151 3.18351 3.20693 3.25443 3.27861 3.37653 3.43673 3.82838 3.97330 4.01548 4.25225 4.30618 4.32162 4.49765 4.61270 4.80595 5.12004 5.18089 5.28727 5.37809 5.40528 5.48405 5.81044 6.05681 6.10510 6.33203 6.57095 6.89271 7.14845 7.46272 8.39071 8.88453 9.41898 10.97143 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.015877 B = 0.003966 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.081740 B = 7057.496854 C = 7779.421216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.975 5.975 3 C 0.223 3.777 4 C -0.536 4.536 5 H 0.080 0.920 6 C 0.076 3.924 7 N -0.891 5.891 8 Si 0.868 3.132 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.264 1.264 12 S 2.685 3.315 13 O -0.927 6.927 14 O -0.958 6.958 15 C -0.650 4.650 16 C -0.020 4.020 17 C 0.084 3.916 18 F -0.125 7.125 19 C -0.061 4.061 20 C -0.181 4.181 21 C 0.515 3.485 22 F -0.172 7.172 23 F -0.174 7.174 24 F -0.170 7.170 25 C 0.016 3.984 26 H 0.043 0.957 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.038 0.962 30 H 0.030 0.970 31 H 0.266 0.734 32 H 0.167 0.833 33 H 0.155 0.845 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.788 -12.369 16.807 21.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.816 5.816 3 C 0.100 3.900 4 C -0.575 4.575 5 H 0.099 0.901 6 C -0.127 4.127 7 N -0.529 5.529 8 Si 0.695 3.305 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.189 1.189 12 S 2.769 3.231 13 O -0.917 6.917 14 O -0.949 6.949 15 C -0.731 4.731 16 C -0.039 4.039 17 C 0.064 3.936 18 F -0.103 7.103 19 C -0.080 4.080 20 C -0.183 4.183 21 C 0.461 3.539 22 F -0.153 7.153 23 F -0.155 7.155 24 F -0.151 7.151 25 C -0.003 4.003 26 H 0.062 0.938 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.184 0.816 33 H 0.173 0.827 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.432 -12.688 16.079 20.768 hybrid contribution 0.495 0.677 1.757 1.947 sum -2.937 -12.010 17.836 21.703 Atomic orbital electron populations 1.21516 0.78864 1.04565 1.00768 1.57092 1.14768 1.21580 1.88163 1.19567 0.90902 0.80380 0.99103 1.21321 1.37301 1.07237 0.91594 0.90148 1.24846 0.95271 0.97115 0.95497 1.69881 1.42170 1.22013 1.18845 0.86981 0.80481 0.80010 0.83049 1.19655 1.20808 1.18910 1.02597 0.74181 0.73079 0.73266 1.93644 1.39926 1.84001 1.74120 1.93543 1.66209 1.59877 1.75234 1.31840 1.01548 1.10377 1.29337 1.21293 0.95888 0.94344 0.92402 1.17447 0.85233 0.99748 0.91212 1.91578 1.49206 1.88481 1.81035 1.21088 0.91530 0.94249 1.01087 1.19854 0.97136 1.05019 0.96336 1.18025 0.80467 0.78510 0.76944 1.93256 1.92741 1.34087 1.95192 1.93207 1.96504 1.92691 1.33143 1.93231 1.41802 1.93942 1.86101 1.20793 0.97556 0.90194 0.91797 0.93799 0.89447 0.90769 0.94383 0.95208 0.92372 0.81568 0.82702 0.82220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.31 10.68 59.85 0.64 1.95 16 2 N -0.98 -17.81 3.17 -123.06 -0.39 -18.20 16 3 C 0.22 4.83 4.15 -5.20 -0.02 4.81 16 4 C -0.54 -14.38 9.94 -34.44 -0.34 -14.72 16 5 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 6 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 7 N -0.89 -26.40 13.96 55.43 0.77 -25.63 16 8 Si 0.87 20.02 27.47 -169.99 -4.67 15.35 16 9 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.26 -5.61 6.54 56.52 0.37 -5.24 16 12 S 2.68 46.88 5.65 -107.50 -0.61 46.27 16 13 O -0.93 -19.44 16.25 -57.17 -0.93 -20.37 16 14 O -0.96 -17.32 15.88 -57.17 -0.91 -18.23 16 15 C -0.65 -8.92 5.97 -39.60 -0.24 -9.16 16 16 C -0.02 -0.26 9.50 -39.52 -0.38 -0.63 16 17 C 0.08 0.96 7.30 -39.42 -0.29 0.67 16 18 F -0.12 -1.44 17.27 2.25 0.04 -1.40 16 19 C -0.06 -0.60 9.38 -39.52 -0.37 -0.97 16 20 C -0.18 -1.92 5.45 -104.63 -0.57 -2.49 16 21 C 0.51 5.06 3.36 36.01 0.12 5.18 16 22 F -0.17 -1.74 17.30 2.25 0.04 -1.70 16 23 F -0.17 -1.64 16.46 2.25 0.04 -1.60 16 24 F -0.17 -1.73 16.46 2.25 0.04 -1.69 16 25 C 0.02 0.19 8.87 -39.58 -0.35 -0.16 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.09 1.34 8.07 -51.93 -0.42 0.92 16 28 H 0.07 1.02 7.02 -51.93 -0.36 0.66 16 29 H 0.04 0.78 7.17 -51.93 -0.37 0.41 16 30 H 0.03 0.63 7.04 -51.93 -0.37 0.26 16 31 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.17 2.11 7.61 -52.49 -0.40 1.71 16 33 H 0.16 1.13 7.60 -52.48 -0.40 0.73 16 34 H 0.16 1.69 7.16 -52.48 -0.38 1.31 16 LS Contribution 326.87 15.07 4.93 4.93 Total: -1.00 -31.59 326.87 -6.25 -37.84 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: -2.71 Total: -2.06 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -1.89 Total: -13.51 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.38 Total: -43.83 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: -1.84 Total: -38.59 kcal Atomic # 9 Polarization: -6.55 SS G_CDS: 0.15 Total: -6.40 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.67 Total: 15.35 kcal Atomic # 16 Polarization: 46.88 SS G_CDS: -0.61 Total: 46.27 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.59 -6.25 -37.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189949154.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -191.509 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds