Wall clock time and date at job start Tue Mar 31 2020 23:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50708 * 109.46639 * 2 1 4 4 N 1.31920 * 119.02116 * 89.99975 * 3 2 1 5 5 C 1.32145 * 121.05233 * 179.97438 * 4 3 2 6 6 C 1.38943 * 119.12604 * 0.02562 * 5 4 3 7 7 Br 1.89103 * 120.88011 * 179.97438 * 6 5 4 8 8 C 1.39600 * 118.24139 * 0.02562 * 6 5 4 9 9 C 1.48382 * 120.56587 * 179.97438 * 8 6 5 10 10 O 1.21489 * 119.99940 * 0.02562 * 9 8 6 11 11 N 1.34777 * 120.00631 * 179.97438 * 9 8 6 12 12 C 1.46490 * 120.00429 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.47469 * 35.00038 * 12 11 9 14 14 C 1.50703 * 109.47238 * 154.99948 * 12 11 9 15 15 H 1.07998 * 119.99948 * 0.02562 * 14 12 11 16 16 C 1.37883 * 119.99901 * 179.97438 * 14 12 11 17 17 N 1.31514 * 119.99866 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 119.99806 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47093 * 60.00099 * 18 16 14 20 20 H 1.48503 * 109.47086 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47388 * 300.00253 * 18 16 14 22 22 C 1.53006 * 109.47115 * 275.00047 * 12 11 9 23 23 C 1.52997 * 109.47127 * 64.99762 * 22 12 11 24 24 N 1.31525 * 119.02191 * 270.27598 * 3 2 1 25 25 H 1.09001 * 109.46595 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47253 * 299.99480 * 1 2 3 27 27 H 1.08998 * 109.47198 * 60.00020 * 1 2 3 28 28 H 1.08998 * 109.47253 * 240.00520 * 2 1 3 29 29 H 1.08998 * 109.47198 * 119.99980 * 2 1 3 30 30 H 1.07998 * 120.44124 * 179.97438 * 5 4 3 31 31 H 0.97001 * 119.99395 * 0.02562 * 11 9 8 32 32 H 0.97000 * 119.99365 * 179.97438 * 17 16 14 33 33 H 1.08998 * 109.46505 * 304.99633 * 22 12 11 34 34 H 1.08996 * 109.46884 * 185.00514 * 22 12 11 35 35 H 1.09002 * 109.47153 * 180.02562 * 23 22 12 36 36 H 1.09001 * 109.46832 * 60.00321 * 23 22 12 37 37 H 1.09004 * 109.47261 * 300.00303 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2455 2.0243 1.1536 5 6 2.6861 3.2693 1.2004 6 6 2.9257 3.9471 0.0114 7 35 3.5558 5.7300 0.0205 8 6 2.6878 3.2774 -1.1902 9 6 2.9257 3.9523 -2.4901 10 8 3.3313 5.0972 -2.5148 11 7 2.6928 3.2949 -3.6434 12 6 2.9282 3.9611 -4.9266 13 1 3.7883 4.6248 -4.8391 14 6 3.1985 2.9258 -5.9879 15 1 3.1949 1.8766 -5.7321 16 6 3.4495 3.3182 -7.2857 17 7 3.4534 4.5959 -7.5973 18 14 3.7853 2.0350 -8.6010 19 1 2.6140 1.1298 -8.7199 20 1 4.0226 2.7102 -9.9022 21 1 4.9855 1.2448 -8.2267 22 6 1.6921 4.7762 -5.3124 23 6 1.4903 5.9062 -4.3009 24 7 2.2397 2.0244 -1.1501 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.8569 3.7539 2.1503 31 1 2.3693 2.3807 -3.6236 32 1 3.6303 4.8719 -8.5102 33 1 0.8156 4.1284 -5.3134 34 1 1.8321 5.1996 -6.3071 35 1 0.6095 6.4866 -4.5754 36 1 2.3669 6.5539 -4.3000 37 1 1.3504 5.4827 -3.3062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195164606.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:29 Heat of formation + Delta-G solvation = -1.664580 kcal Electronic energy + Delta-G solvation = -21782.543907 eV Core-core repulsion = 18412.865751 eV Total energy + Delta-G solvation = -3369.678156 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.52075 -40.53150 -37.08362 -35.59657 -35.29134 -34.23420 -33.01517 -32.69009 -30.39238 -29.08028 -26.87115 -25.81351 -24.96759 -23.38931 -22.09217 -21.26568 -19.79922 -19.01578 -17.94694 -17.19872 -16.86281 -16.48056 -16.27081 -16.00255 -15.84580 -15.09269 -14.91765 -14.74126 -14.58530 -13.96517 -13.59162 -13.41867 -13.17313 -12.95630 -12.82335 -12.65959 -12.31906 -12.26557 -12.13435 -12.10015 -12.07061 -11.97962 -11.87159 -11.54178 -11.11882 -10.99451 -10.53598 -10.28427 -9.95840 -9.66170 -8.15958 -6.32802 -0.88219 -0.42808 0.35792 1.45674 1.47044 1.54788 1.71011 2.04396 2.42832 2.51780 2.65957 2.81218 3.13557 3.33915 3.46093 3.79502 4.19931 4.34058 4.38113 4.50191 4.56876 4.59935 4.75107 5.00305 5.02352 5.06203 5.10012 5.25081 5.34166 5.41359 5.44703 5.50412 5.59029 5.77681 5.88068 6.14873 6.63890 6.71757 6.86012 7.25104 7.42063 8.89053 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.012007 B = 0.004523 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.503480 B = 6189.476116 C = 7915.289038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.056 4.056 3 C 0.323 3.677 4 N -0.498 5.498 5 C 0.196 3.804 6 C -0.179 4.179 7 Br 0.018 6.982 8 C 0.153 3.847 9 C 0.538 3.462 10 O -0.526 6.526 11 N -0.679 5.679 12 C 0.279 3.721 13 H 0.010 0.990 14 C -0.551 4.551 15 H 0.067 0.933 16 C 0.021 3.979 17 N -0.911 5.911 18 Si 0.968 3.032 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.273 1.273 22 C -0.120 4.120 23 C -0.122 4.122 24 N -0.498 5.498 25 H 0.093 0.907 26 H 0.057 0.943 27 H 0.044 0.956 28 H 0.100 0.900 29 H 0.114 0.886 30 H 0.221 0.779 31 H 0.405 0.595 32 H 0.266 0.734 33 H 0.036 0.964 34 H 0.076 0.924 35 H 0.045 0.955 36 H 0.034 0.966 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.098 -5.438 19.427 20.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.095 4.095 3 C 0.056 3.944 4 N -0.212 5.212 5 C 0.026 3.974 6 C -0.265 4.265 7 Br 0.103 6.897 8 C 0.004 3.996 9 C 0.320 3.680 10 O -0.402 6.402 11 N -0.327 5.327 12 C 0.177 3.823 13 H 0.028 0.972 14 C -0.589 4.589 15 H 0.085 0.915 16 C -0.180 4.180 17 N -0.549 5.549 18 Si 0.792 3.208 19 H -0.191 1.191 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.159 4.159 23 C -0.180 4.180 24 N -0.215 5.215 25 H 0.112 0.888 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.118 0.882 29 H 0.132 0.868 30 H 0.237 0.763 31 H 0.240 0.760 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.875 -4.746 19.158 20.114 hybrid contribution 0.393 -0.062 -1.006 1.082 sum -3.482 -4.809 18.152 19.099 Atomic orbital electron populations 1.21684 0.92355 1.04030 1.01724 1.20623 0.97568 0.85320 1.05939 1.24128 0.89185 0.98617 0.82467 1.68431 1.13131 1.09843 1.29826 1.24007 0.87011 0.88752 0.97658 1.23973 1.07682 0.97545 0.97281 1.96818 1.85830 1.08318 1.98729 1.21676 0.92978 0.90638 0.94328 1.18075 0.80081 0.86197 0.83612 1.90912 1.46023 1.16798 1.86470 1.46227 1.63446 1.17406 1.05657 1.18511 0.93448 0.91804 0.78558 0.97237 1.21488 1.50131 0.93384 0.93867 0.91488 1.25689 0.94428 0.97393 1.00464 1.70020 1.48642 1.16114 1.20136 0.85467 0.78927 0.78761 0.77605 1.19063 1.20991 1.19811 1.21786 0.97280 0.96413 1.00407 1.21667 0.99546 0.98319 0.98427 1.68374 1.13068 1.08069 1.31967 0.88830 0.92422 0.93641 0.88167 0.86775 0.76310 0.75955 0.92499 0.94488 0.90548 0.93644 0.94711 0.94262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.89 71.98 0.71 -1.38 16 2 C -0.06 -0.93 6.37 29.85 0.19 -0.74 16 3 C 0.32 7.86 6.89 138.80 0.96 8.82 16 4 N -0.50 -11.26 10.31 -187.79 -1.94 -13.20 16 5 C 0.20 4.20 11.10 84.81 0.94 5.14 16 6 C -0.18 -5.07 6.30 22.77 0.14 -4.92 16 7 Br 0.02 0.52 30.63 -20.37 -0.62 -0.10 16 8 C 0.15 5.16 6.79 41.98 0.29 5.45 16 9 C 0.54 22.04 6.39 86.95 0.56 22.59 16 10 O -0.53 -23.46 10.81 -3.68 -0.04 -23.50 16 11 N -0.68 -29.40 5.01 -448.47 -2.25 -31.65 16 12 C 0.28 14.28 2.24 44.25 0.10 14.38 16 13 H 0.01 0.58 7.58 -2.39 -0.02 0.56 16 14 C -0.55 -29.22 8.73 25.60 0.22 -29.00 16 15 H 0.07 3.40 7.74 -2.91 -0.02 3.37 16 16 C 0.02 1.11 5.29 84.66 0.45 1.56 16 17 N -0.91 -51.37 11.29 21.45 0.24 -51.12 16 18 Si 0.97 41.97 29.54 68.60 2.03 44.00 16 19 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 22 C -0.12 -5.88 5.45 30.60 0.17 -5.71 16 23 C -0.12 -5.42 8.51 71.98 0.61 -4.81 16 24 N -0.50 -15.05 9.60 -177.06 -1.70 -16.75 16 25 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.04 0.83 8.14 -2.39 -0.02 0.82 16 28 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.22 2.84 8.06 -2.91 -0.02 2.81 16 31 H 0.41 16.24 7.92 -92.71 -0.73 15.51 16 32 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 33 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.08 4.16 5.95 -2.39 -0.01 4.15 16 35 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.03 1.63 7.85 -2.39 -0.02 1.61 16 37 H 0.04 1.69 5.65 -2.38 -0.01 1.68 16 Total: -1.00 -62.81 328.51 1.42 -61.38 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.37 Total: 19.57 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 5.33 Total: 11.37 kcal Atomic # 7 Polarization: -107.08 SS G_CDS: -5.64 Total: -112.72 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.04 Total: -23.50 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Atomic # 35 Polarization: 0.52 SS G_CDS: -0.62 Total: -0.10 kcal Total: -62.81 1.42 -61.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195164606.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.719 kcal (2) G-P(sol) polarization free energy of solvation -62.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds