Wall clock time and date at job start Tue Mar 31 2020 23:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86803 * 119.99820 * 2 1 4 4 H 1.48503 * 109.47053 * 270.00278 * 3 2 1 5 5 H 1.48496 * 109.47019 * 30.00230 * 3 2 1 6 6 H 1.48493 * 109.46969 * 150.00371 * 3 2 1 7 7 C 1.37871 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00485 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99582 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46742 * 179.97438 * 9 7 2 11 11 O 1.42901 * 109.46945 * 180.02562 * 10 9 7 12 12 C 1.42910 * 114.00024 * 180.02562 * 11 10 9 13 13 H 1.08995 * 110.36407 * 332.17674 * 12 11 10 14 14 C 1.54257 * 110.32027 * 209.99715 * 12 11 10 15 15 C 1.54381 * 105.14978 * 241.04997 * 14 12 11 16 16 N 1.48720 * 104.51692 * 336.27274 * 15 14 12 17 17 C 1.38443 * 111.01671 * 158.96262 * 16 15 14 18 18 N 1.32480 * 119.21062 * 244.21898 * 17 16 15 19 19 C 1.32280 * 120.75246 * 179.76055 * 18 17 16 20 20 C 1.38676 * 119.18588 * 0.50787 * 19 18 17 21 21 Br 1.89099 * 120.73093 * 179.72911 * 20 19 18 22 22 C 1.38683 * 118.54005 * 359.74753 * 20 19 18 23 23 N 1.32275 * 119.18213 * 0.02562 * 22 20 19 24 24 C 1.48567 * 104.28820 * 39.36098 * 16 15 14 25 25 H 0.96995 * 119.99937 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46844 * 60.00220 * 9 7 2 27 27 H 1.08995 * 109.47089 * 299.99532 * 9 7 2 28 28 H 1.09004 * 109.47488 * 60.00379 * 10 9 7 29 29 H 1.08997 * 109.47437 * 300.00006 * 10 9 7 30 30 H 1.09002 * 110.32715 * 0.02562 * 14 12 11 31 31 H 1.08998 * 110.32251 * 122.10579 * 14 12 11 32 32 H 1.09004 * 110.40867 * 94.98012 * 15 14 12 33 33 H 1.08996 * 110.41187 * 217.42234 * 15 14 12 34 34 H 1.07999 * 120.40936 * 180.25869 * 19 18 17 35 35 H 1.08000 * 120.40875 * 180.02562 * 22 20 19 36 36 H 1.08999 * 110.41133 * 201.79165 * 24 16 15 37 37 H 1.09004 * 110.50861 * 79.40616 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 8 5.4506 -2.6365 -0.0009 12 6 6.0318 -3.9420 -0.0014 13 1 5.3605 -4.6563 0.4752 14 6 7.3942 -3.9221 0.7219 15 6 8.4231 -4.3574 -0.3436 16 7 7.6294 -5.1342 -1.3328 17 6 8.2786 -5.1928 -2.5542 18 7 7.7211 -4.6203 -3.6108 19 6 8.3170 -4.6538 -4.7914 20 6 9.5338 -5.3070 -4.9164 21 35 10.4200 -5.3882 -6.5849 22 6 10.0863 -5.8998 -3.7910 23 7 9.4397 -5.8252 -2.6395 24 6 6.3505 -4.3865 -1.4451 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6804 0.8888 27 1 3.8746 -0.6800 -0.8911 28 1 3.6579 -3.1505 -0.8908 29 1 3.6586 -3.1501 0.8892 30 1 7.6194 -2.9167 1.0776 31 1 7.3910 -4.6254 1.5546 32 1 8.8715 -3.4845 -0.8180 33 1 9.1930 -4.9848 0.1054 34 1 7.8595 -4.1816 -5.6482 35 1 11.0328 -6.4161 -3.8540 36 1 5.5624 -5.0363 -1.8255 37 1 6.4715 -3.5179 -2.0924 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205632213.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:42 Heat of formation + Delta-G solvation = 26.434765 kcal Electronic energy + Delta-G solvation = -20854.287177 eV Core-core repulsion = 17485.827500 eV Total energy + Delta-G solvation = -3368.459677 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.71698 -39.27107 -36.87484 -34.29563 -33.71139 -33.04587 -31.47255 -30.30351 -29.08382 -28.36454 -25.19090 -24.75862 -23.92397 -21.77645 -20.89495 -20.53228 -18.29758 -18.07894 -17.08702 -16.39794 -16.12469 -15.56413 -15.20313 -14.99849 -14.52912 -14.20772 -14.11811 -13.91843 -13.52256 -12.91750 -12.64084 -12.48305 -12.06323 -11.83153 -11.65773 -11.47995 -11.41125 -11.34229 -11.06423 -11.04012 -10.55972 -10.36889 -10.13807 -9.99322 -9.84340 -9.59223 -9.28223 -9.05547 -8.80414 -8.57314 -6.09108 -4.08827 0.22581 0.59235 1.00638 2.78901 3.18348 3.30890 3.37908 3.43818 3.60382 3.99257 4.03102 4.30766 4.37036 4.42873 4.45976 4.64124 4.89282 5.12474 5.17160 5.25396 5.32308 5.36084 5.61403 5.69031 5.76810 5.82015 5.97396 6.07733 6.13436 6.19251 6.22850 6.62940 6.73513 7.08176 7.34487 7.60999 7.65344 7.84078 8.45349 8.93045 9.52212 11.03769 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.017419 B = 0.002252 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.061883 B =12432.437276 C =13524.959611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.524 4.524 8 H 0.073 0.927 9 C -0.009 4.009 10 C 0.074 3.926 11 O -0.383 6.383 12 C 0.083 3.917 13 H 0.076 0.924 14 C -0.125 4.125 15 C 0.056 3.944 16 N -0.440 5.440 17 C 0.502 3.498 18 N -0.536 5.536 19 C 0.210 3.790 20 C -0.241 4.241 21 Br -0.020 7.020 22 C 0.207 3.793 23 N -0.517 5.517 24 C 0.024 3.976 25 H 0.265 0.735 26 H 0.024 0.976 27 H 0.020 0.980 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.178 0.822 35 H 0.179 0.821 36 H 0.092 0.908 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.652 -13.480 -11.031 31.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.046 4.046 10 C -0.001 4.001 11 O -0.301 6.301 12 C 0.023 3.977 13 H 0.094 0.906 14 C -0.163 4.163 15 C -0.069 4.069 16 N -0.160 5.160 17 C 0.147 3.853 18 N -0.255 5.255 19 C 0.041 3.959 20 C -0.327 4.327 21 Br 0.063 6.937 22 C 0.037 3.963 23 N -0.234 5.234 24 C -0.103 4.103 25 H 0.074 0.926 26 H 0.042 0.958 27 H 0.038 0.962 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.117 0.883 34 H 0.195 0.805 35 H 0.196 0.804 36 H 0.110 0.890 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 25.303 -13.717 -10.467 30.626 hybrid contribution 0.430 1.140 -0.926 1.530 sum 25.733 -12.576 -11.393 30.825 Atomic orbital electron populations 1.69905 1.06284 1.27084 1.50658 1.24958 0.94744 0.99202 0.94279 0.86750 0.80434 0.83340 0.78674 1.20169 1.21308 1.18789 1.20926 0.88759 0.94764 1.51734 0.90893 1.19538 0.96632 0.91039 0.97440 1.22746 0.77168 1.00934 0.99274 1.87971 1.22468 1.25087 1.94616 1.22682 0.94895 0.86893 0.93220 0.90588 1.22512 0.92935 1.03419 0.97432 1.23162 0.96351 0.95715 0.91700 1.61906 1.05184 1.45889 1.03032 1.21493 0.86222 0.86651 0.90935 1.68636 1.36321 1.20503 1.00002 1.23233 0.88450 0.89173 0.95063 1.23559 1.01595 1.11892 0.95661 1.96768 1.77054 1.98024 1.21862 1.23199 0.97679 0.90195 0.85252 1.68204 1.09138 1.18950 1.27118 1.23736 0.89065 0.98457 0.99088 0.92571 0.95770 0.96209 0.93852 0.93746 0.88891 0.89612 0.92593 0.88333 0.80459 0.80413 0.88970 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.52 -14.93 9.66 -34.44 -0.33 -15.26 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.22 4.41 -27.88 -0.12 -0.34 16 10 C 0.07 1.51 5.72 37.16 0.21 1.72 16 11 O -0.38 -6.95 9.95 -35.23 -0.35 -7.30 16 12 C 0.08 1.17 3.54 -25.35 -0.09 1.08 16 13 H 0.08 1.02 7.82 -51.93 -0.41 0.61 16 14 C -0.13 -1.42 6.80 -25.35 -0.17 -1.59 16 15 C 0.06 0.62 6.30 -2.09 -0.01 0.61 16 16 N -0.44 -5.65 5.46 -170.82 -0.93 -6.58 16 17 C 0.50 6.45 6.94 -322.78 -2.24 4.21 16 18 N -0.54 -6.76 8.42 -13.91 -0.12 -6.88 16 19 C 0.21 2.06 11.08 -17.20 -0.19 1.87 16 20 C -0.24 -2.06 6.27 -39.26 -0.25 -2.31 16 21 Br -0.02 -0.14 33.76 -68.01 -2.30 -2.44 16 22 C 0.21 1.82 11.08 -17.20 -0.19 1.63 16 23 N -0.52 -5.96 10.26 -13.91 -0.14 -6.10 16 24 C 0.02 0.33 5.63 -2.18 -0.01 0.32 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.02 0.60 7.20 -51.93 -0.37 0.22 16 27 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 28 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 30 H 0.09 1.08 7.98 -51.93 -0.41 0.66 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.64 7.97 -51.93 -0.41 0.22 16 33 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.18 1.30 8.06 -52.49 -0.42 0.87 16 35 H 0.18 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.09 1.37 7.06 -51.93 -0.37 1.00 16 LS Contribution 331.62 15.07 5.00 5.00 Total: -1.00 -31.97 331.62 -11.14 -43.11 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -4.91 Total: -2.94 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -3.50 Total: -6.14 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: -0.42 Total: -46.44 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.35 Total: -7.30 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Atomic # 35 Polarization: -0.14 SS G_CDS: -2.30 Total: -2.44 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.97 -11.14 -43.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205632213.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.544 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds