Wall clock time and date at job start Tue Mar 31 2020 23:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86803 * 119.99820 * 2 1 4 4 H 1.48503 * 109.47053 * 270.00278 * 3 2 1 5 5 H 1.48496 * 109.47019 * 30.00230 * 3 2 1 6 6 H 1.48493 * 109.46969 * 150.00371 * 3 2 1 7 7 C 1.37871 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00485 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99582 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46742 * 179.97438 * 9 7 2 11 11 O 1.42901 * 109.46945 * 180.02562 * 10 9 7 12 12 C 1.42910 * 114.00024 * 180.02562 * 11 10 9 13 13 H 1.08995 * 110.36407 * 332.17674 * 12 11 10 14 14 C 1.54257 * 110.32027 * 209.99715 * 12 11 10 15 15 C 1.54381 * 105.14978 * 241.04997 * 14 12 11 16 16 N 1.48720 * 104.51692 * 336.27274 * 15 14 12 17 17 C 1.38443 * 111.01671 * 158.96262 * 16 15 14 18 18 N 1.32480 * 119.21062 * 244.21898 * 17 16 15 19 19 C 1.32280 * 120.75246 * 179.76055 * 18 17 16 20 20 C 1.38676 * 119.18588 * 0.50787 * 19 18 17 21 21 Br 1.89099 * 120.73093 * 179.72911 * 20 19 18 22 22 C 1.38683 * 118.54005 * 359.74753 * 20 19 18 23 23 N 1.32275 * 119.18213 * 0.02562 * 22 20 19 24 24 C 1.48567 * 104.28820 * 39.36098 * 16 15 14 25 25 H 0.96995 * 119.99937 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46844 * 60.00220 * 9 7 2 27 27 H 1.08995 * 109.47089 * 299.99532 * 9 7 2 28 28 H 1.09004 * 109.47488 * 60.00379 * 10 9 7 29 29 H 1.08997 * 109.47437 * 300.00006 * 10 9 7 30 30 H 1.09002 * 110.32715 * 0.02562 * 14 12 11 31 31 H 1.08998 * 110.32251 * 122.10579 * 14 12 11 32 32 H 1.09004 * 110.40867 * 94.98012 * 15 14 12 33 33 H 1.08996 * 110.41187 * 217.42234 * 15 14 12 34 34 H 1.07999 * 120.40936 * 180.25869 * 19 18 17 35 35 H 1.08000 * 120.40875 * 180.02562 * 22 20 19 36 36 H 1.08999 * 110.41133 * 201.79165 * 24 16 15 37 37 H 1.09004 * 110.50861 * 79.40616 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 8 5.4506 -2.6365 -0.0009 12 6 6.0318 -3.9420 -0.0014 13 1 5.3605 -4.6563 0.4752 14 6 7.3942 -3.9221 0.7219 15 6 8.4231 -4.3574 -0.3436 16 7 7.6294 -5.1342 -1.3328 17 6 8.2786 -5.1928 -2.5542 18 7 7.7211 -4.6203 -3.6108 19 6 8.3170 -4.6538 -4.7914 20 6 9.5338 -5.3070 -4.9164 21 35 10.4200 -5.3882 -6.5849 22 6 10.0863 -5.8998 -3.7910 23 7 9.4397 -5.8252 -2.6395 24 6 6.3505 -4.3865 -1.4451 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6804 0.8888 27 1 3.8746 -0.6800 -0.8911 28 1 3.6579 -3.1505 -0.8908 29 1 3.6586 -3.1501 0.8892 30 1 7.6194 -2.9167 1.0776 31 1 7.3910 -4.6254 1.5546 32 1 8.8715 -3.4845 -0.8180 33 1 9.1930 -4.9848 0.1054 34 1 7.8595 -4.1816 -5.6482 35 1 11.0328 -6.4161 -3.8540 36 1 5.5624 -5.0363 -1.8255 37 1 6.4715 -3.5179 -2.0924 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205632213.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:42 Heat of formation + Delta-G solvation = 6.516688 kcal Electronic energy + Delta-G solvation = -20855.150889 eV Core-core repulsion = 17485.827500 eV Total energy + Delta-G solvation = -3369.323390 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.54136 -40.31428 -38.16828 -35.35243 -35.09772 -34.32902 -32.72617 -31.80784 -29.93741 -29.40912 -26.67801 -25.91008 -24.85884 -22.74309 -22.54289 -21.79747 -19.33458 -18.98645 -18.85019 -17.63836 -17.04980 -16.56056 -16.45140 -16.32306 -15.91087 -15.49715 -15.13001 -14.96703 -14.81960 -14.43516 -14.16055 -13.60115 -13.36186 -13.15921 -12.78819 -12.76283 -12.45590 -12.29012 -12.19998 -12.02145 -11.91688 -11.80677 -11.67730 -11.63279 -11.38602 -10.96172 -10.80994 -10.47281 -10.37333 -9.65019 -8.32710 -6.38389 -0.55664 -0.15006 0.33426 1.36569 1.37803 1.50987 1.91546 2.34891 2.37474 2.77193 2.85147 3.02582 3.31561 3.38044 3.56479 3.63297 3.69446 3.97240 4.13897 4.29089 4.37508 4.40500 4.44896 4.52342 4.69908 4.77872 4.81950 4.86475 4.90553 5.05450 5.05819 5.27201 5.38990 5.41906 5.57388 5.88180 6.19481 6.35642 6.68095 6.79603 7.26802 8.83389 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.017419 B = 0.002252 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.061883 B =12432.437276 C =13524.959611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.010 3.990 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.250 1.250 7 C -0.535 4.535 8 H 0.039 0.961 9 C -0.007 4.007 10 C 0.087 3.913 11 O -0.393 6.393 12 C 0.074 3.926 13 H 0.084 0.916 14 C -0.117 4.117 15 C 0.060 3.940 16 N -0.444 5.444 17 C 0.484 3.516 18 N -0.563 5.563 19 C 0.200 3.800 20 C -0.234 4.234 21 Br 0.001 6.999 22 C 0.207 3.793 23 N -0.529 5.529 24 C 0.032 3.968 25 H 0.269 0.731 26 H 0.025 0.975 27 H 0.020 0.980 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.048 0.952 33 H 0.116 0.884 34 H 0.197 0.803 35 H 0.211 0.789 36 H 0.086 0.914 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.347 -13.502 -11.395 33.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.187 4.187 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.173 1.173 7 C -0.572 4.572 8 H 0.057 0.943 9 C -0.044 4.044 10 C 0.011 3.989 11 O -0.312 6.312 12 C 0.016 3.984 13 H 0.102 0.898 14 C -0.154 4.154 15 C -0.065 4.065 16 N -0.165 5.165 17 C 0.129 3.871 18 N -0.283 5.283 19 C 0.032 3.968 20 C -0.319 4.319 21 Br 0.085 6.915 22 C 0.037 3.963 23 N -0.246 5.246 24 C -0.095 4.095 25 H 0.078 0.922 26 H 0.043 0.957 27 H 0.038 0.962 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.110 0.890 31 H 0.127 0.873 32 H 0.067 0.933 33 H 0.134 0.866 34 H 0.214 0.786 35 H 0.227 0.773 36 H 0.104 0.896 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 28.032 -13.760 -10.853 33.059 hybrid contribution -0.348 1.029 -0.939 1.436 sum 27.684 -12.730 -11.792 32.673 Atomic orbital electron populations 1.70042 1.08142 1.28386 1.52020 1.25916 0.95617 1.03370 0.93821 0.85660 0.79449 0.78304 0.79277 1.19178 1.20551 1.17314 1.21219 0.91045 0.93654 1.51330 0.94264 1.19417 0.93948 0.93798 0.97256 1.22362 0.78765 0.98282 0.99458 1.87921 1.20733 1.27728 1.94798 1.22955 0.96284 0.85208 0.93996 0.89763 1.22513 0.90956 1.04110 0.97855 1.23198 0.96409 0.95680 0.91182 1.61953 1.04932 1.45885 1.03724 1.21556 0.87028 0.87613 0.90939 1.68605 1.37316 1.21458 1.00910 1.23613 0.89017 0.89328 0.94823 1.23655 1.01056 1.10623 0.96576 1.96802 1.76450 1.97906 1.20369 1.23765 0.98325 0.89667 0.84514 1.68225 1.08843 1.19153 1.28423 1.23511 0.89870 0.97736 0.98424 0.92225 0.95673 0.96185 0.94020 0.93319 0.88974 0.87285 0.93303 0.86558 0.78638 0.77286 0.89599 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.15 13.96 21.45 0.30 -58.85 16 2 C 0.01 0.61 5.47 84.65 0.46 1.07 16 3 Si 0.95 44.71 27.47 68.60 1.88 46.60 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 7 C -0.53 -31.03 9.66 25.60 0.25 -30.78 16 8 H 0.04 2.46 7.99 -2.91 -0.02 2.44 16 9 C -0.01 -0.32 4.41 29.85 0.13 -0.19 16 10 C 0.09 3.54 5.72 71.98 0.41 3.96 16 11 O -0.39 -13.99 9.95 -148.98 -1.48 -15.47 16 12 C 0.07 2.03 3.54 31.49 0.11 2.14 16 13 H 0.08 2.17 7.82 -2.39 -0.02 2.15 16 14 C -0.12 -2.43 6.80 31.49 0.21 -2.22 16 15 C 0.06 1.25 6.30 86.42 0.54 1.79 16 16 N -0.44 -11.09 5.46 -694.36 -3.79 -14.88 16 17 C 0.48 12.13 6.94 261.48 1.81 13.94 16 18 N -0.56 -14.09 8.42 -197.91 -1.67 -15.75 16 19 C 0.20 3.73 11.08 84.73 0.94 4.67 16 20 C -0.23 -3.58 6.27 22.48 0.14 -3.44 16 21 Br 0.00 0.02 33.76 -20.37 -0.69 -0.67 16 22 C 0.21 3.21 11.08 84.73 0.94 4.15 16 23 N -0.53 -11.47 10.26 -197.91 -2.03 -13.50 16 24 C 0.03 0.90 5.63 86.45 0.49 1.38 16 25 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 26 H 0.02 1.21 7.20 -2.39 -0.02 1.19 16 27 H 0.02 0.96 7.57 -2.39 -0.02 0.94 16 28 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.05 1.91 8.11 -2.39 -0.02 1.89 16 30 H 0.09 1.97 7.98 -2.39 -0.02 1.95 16 31 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.05 1.07 7.97 -2.38 -0.02 1.05 16 33 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.20 2.65 8.06 -2.91 -0.02 2.63 16 35 H 0.21 1.73 8.06 -2.91 -0.02 1.71 16 36 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.07 2.19 7.06 -2.39 -0.02 2.17 16 Total: -1.00 -69.21 331.62 -0.01 -69.22 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 1.02 Total: 6.84 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 6.44 Total: -3.53 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -7.19 Total: -102.98 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -1.48 Total: -15.47 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.88 Total: 46.60 kcal Atomic # 35 Polarization: 0.02 SS G_CDS: -0.69 Total: -0.67 kcal Total: -69.21 -0.01 -69.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205632213.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.736 kcal (2) G-P(sol) polarization free energy of solvation -69.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds