Wall clock time and date at job start Tue Mar 31 2020 23:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35921 * 117.00147 * 2 1 4 4 C 1.38630 * 120.02854 * 359.72754 * 3 2 1 5 5 C 1.38620 * 119.90266 * 179.80902 * 4 3 2 6 6 O 1.35911 * 120.02184 * 180.20219 * 5 4 3 7 7 C 1.42896 * 117.00146 * 354.71330 * 6 5 4 8 8 H 1.09001 * 110.64023 * 326.92429 * 7 6 5 9 9 C 1.55157 * 110.71993 * 203.78504 * 7 6 5 10 10 C 1.54908 * 101.58164 * 206.13311 * 9 7 6 11 11 N 1.47426 * 104.83155 * 37.00830 * 10 9 7 12 12 C 1.36938 * 125.64942 * 155.83846 * 11 10 9 13 13 H 1.08005 * 120.00184 * 180.02562 * 12 11 10 14 14 C 1.38821 * 119.99944 * 0.02562 * 12 11 10 15 15 N 1.31611 * 119.99725 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99954 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47476 * 59.99493 * 16 14 12 18 18 H 1.48500 * 109.47192 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47095 * 299.99640 * 16 14 12 20 20 C 1.47316 * 108.73863 * 335.71418 * 11 10 9 21 21 C 1.38783 * 119.95823 * 0.42439 * 5 4 3 22 22 C 1.38164 * 120.05908 * 359.80068 * 21 5 4 23 23 C 1.38256 * 120.10253 * 0.02562 * 22 21 5 24 24 Br 1.89102 * 119.98385 * 179.97438 * 23 22 21 25 25 H 1.08998 * 109.47020 * 299.99978 * 1 2 3 26 26 H 1.09002 * 109.47104 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46833 * 59.99634 * 1 2 3 28 28 H 1.08001 * 120.05027 * 359.97438 * 4 3 2 29 29 H 1.09005 * 111.00147 * 324.20206 * 9 7 6 30 30 H 1.08993 * 111.01000 * 88.05996 * 9 7 6 31 31 H 1.09003 * 110.37064 * 155.84473 * 10 9 7 32 32 H 1.09003 * 110.36944 * 278.06154 * 10 9 7 33 33 H 0.97003 * 119.99850 * 179.97438 * 15 14 12 34 34 H 1.08996 * 110.06856 * 241.87490 * 20 11 10 35 35 H 1.09001 * 109.85059 * 120.61182 * 20 11 10 36 36 H 1.07996 * 119.96724 * 179.79005 * 21 5 4 37 37 H 1.08007 * 119.94915 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2917 2.3741 -0.0057 5 6 1.9237 3.6078 -0.0017 6 8 1.1864 4.7496 -0.0031 7 6 -0.2301 4.6070 -0.1261 8 1 -0.4770 3.7479 -0.7498 9 6 -0.8644 5.9018 -0.6993 10 6 -2.3024 5.8225 -0.1288 11 7 -2.1418 5.2539 1.2218 12 6 -3.0143 5.4156 2.2648 13 1 -2.8054 4.9566 3.2198 14 6 -4.1674 6.1696 2.0946 15 7 -4.4218 6.7294 0.9309 16 14 -5.3573 6.3908 3.5174 17 1 -4.6590 7.0533 4.6482 18 1 -6.5002 7.2323 3.0807 19 1 -5.8582 5.0630 3.9548 20 6 -0.8889 4.4802 1.2637 21 6 3.3098 3.6764 -0.0009 22 6 4.0601 2.5162 0.0001 23 6 3.4323 1.2844 -0.0003 24 35 4.4625 -0.3014 0.0003 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 0.2131 2.3191 -0.0106 29 1 -0.3461 6.7871 -0.3305 30 1 -0.8748 5.8826 -1.7890 31 1 -2.7433 6.8177 -0.0715 32 1 -2.9199 5.1699 -0.7460 33 1 -5.2277 7.2559 0.8118 34 1 -1.1028 3.4332 1.4784 35 1 -0.2265 4.8894 2.0266 36 1 3.8024 4.6375 -0.0012 37 1 5.1388 2.5716 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225428539.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:33 Heat of formation + Delta-G solvation = -12.532034 kcal Electronic energy + Delta-G solvation = -21621.734229 eV Core-core repulsion = 18219.292074 eV Total energy + Delta-G solvation = -3402.442155 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.68798 -39.13099 -37.34373 -36.03846 -32.49755 -31.74145 -30.47462 -29.49830 -28.77811 -27.83579 -26.85700 -24.64024 -22.67121 -22.26748 -20.38980 -20.28005 -18.85148 -17.27028 -16.77021 -16.09348 -15.96358 -15.86811 -15.16473 -14.84024 -14.53573 -14.32456 -13.86155 -13.65448 -12.99879 -12.77890 -12.58254 -12.31591 -11.98917 -11.79737 -11.43490 -11.41580 -11.25671 -11.08973 -10.86863 -10.84058 -10.53039 -10.23712 -10.21732 -9.97416 -9.92579 -9.70785 -8.79375 -8.76005 -8.01634 -6.98793 -5.76706 -3.19568 1.07516 1.22462 1.67357 3.03663 3.25194 3.35050 3.39542 3.40890 3.49659 4.39748 4.60449 4.74751 4.93240 5.06594 5.07947 5.14514 5.15982 5.25347 5.30569 5.40207 5.42763 5.45839 5.61944 5.81653 6.01637 6.10427 6.14458 6.27263 6.35761 6.41726 6.46115 6.56178 7.01840 7.32098 7.48911 7.51297 7.71458 8.21979 9.09372 9.69351 10.31884 11.27576 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.024827 B = 0.002701 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.551082 B =10364.618019 C =10913.023858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.303 6.303 3 C 0.195 3.805 4 C -0.296 4.296 5 C 0.197 3.803 6 O -0.295 6.295 7 C 0.066 3.934 8 H 0.077 0.923 9 C -0.136 4.136 10 C 0.152 3.848 11 N -0.600 5.600 12 C -0.227 4.227 13 H 0.078 0.922 14 C -0.008 4.008 15 N -0.923 5.923 16 Si 0.918 3.082 17 H -0.284 1.284 18 H -0.289 1.289 19 H -0.285 1.285 20 C 0.120 3.880 21 C -0.190 4.190 22 C -0.016 4.016 23 C -0.172 4.172 24 Br -0.049 7.049 25 H 0.062 0.938 26 H 0.104 0.896 27 H 0.059 0.941 28 H 0.147 0.853 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.115 0.885 32 H 0.017 0.983 33 H 0.255 0.745 34 H 0.024 0.976 35 H 0.037 0.963 36 H 0.140 0.860 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.636 -12.215 -5.163 21.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.215 6.215 3 C 0.147 3.853 4 C -0.316 4.316 5 C 0.149 3.851 6 O -0.207 6.207 7 C 0.010 3.990 8 H 0.095 0.905 9 C -0.174 4.174 10 C 0.028 3.972 11 N -0.328 5.328 12 C -0.355 4.355 13 H 0.096 0.904 14 C -0.204 4.204 15 N -0.571 5.571 16 Si 0.748 3.252 17 H -0.210 1.210 18 H -0.214 1.214 19 H -0.211 1.211 20 C -0.007 4.007 21 C -0.209 4.209 22 C -0.036 4.036 23 C -0.252 4.252 24 Br 0.036 6.964 25 H 0.081 0.919 26 H 0.122 0.878 27 H 0.077 0.923 28 H 0.164 0.836 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.133 0.867 32 H 0.035 0.965 33 H 0.065 0.935 34 H 0.042 0.958 35 H 0.055 0.945 36 H 0.158 0.842 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 16.922 -12.688 -5.100 21.757 hybrid contribution -1.314 0.328 0.715 1.532 sum 15.608 -12.360 -4.385 20.386 Atomic orbital electron populations 1.23183 0.77550 1.04369 1.02135 1.86163 1.21926 1.25811 1.87582 1.18325 0.90414 0.84551 0.92013 1.21414 1.01337 0.91474 1.17342 1.18955 0.91312 0.85246 0.89596 1.86213 1.20469 1.28179 1.85837 1.23785 0.76004 1.00709 0.98495 0.90509 1.23227 0.99425 0.95310 0.99458 1.22008 0.88926 1.02388 0.83898 1.44432 1.20737 1.57908 1.09692 1.19038 0.99261 1.26898 0.90326 0.90388 1.24801 0.98249 0.99989 0.97355 1.69734 1.27151 1.38177 1.22029 0.86106 0.80300 0.77699 0.81115 1.21012 1.21445 1.21123 1.21730 0.89831 0.95358 0.93761 1.20347 0.90496 0.99255 1.10842 1.20688 0.99964 0.89115 0.93816 1.20768 0.90888 0.92894 1.20621 1.96617 1.69373 1.32288 1.98169 0.91946 0.87760 0.92277 0.83582 0.90593 0.91372 0.86724 0.96534 0.93457 0.95775 0.94459 0.84212 0.83985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 101.05 0.99 1.22 16 2 O -0.30 -3.89 9.83 -19.49 -0.19 -4.08 16 3 C 0.20 2.66 6.67 -39.22 -0.26 2.40 16 4 C -0.30 -4.16 7.89 -39.30 -0.31 -4.47 16 5 C 0.20 2.88 6.67 -39.24 -0.26 2.62 16 6 O -0.30 -4.89 9.86 -19.46 -0.19 -5.08 16 7 C 0.07 1.16 2.74 -24.89 -0.07 1.09 16 8 H 0.08 1.23 6.25 -51.93 -0.32 0.90 16 9 C -0.14 -2.50 6.81 -24.58 -0.17 -2.67 16 10 C 0.15 3.55 5.89 -2.53 -0.01 3.53 16 11 N -0.60 -15.01 3.40 -169.83 -0.58 -15.59 16 12 C -0.23 -6.20 10.28 -15.06 -0.15 -6.36 16 13 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 14 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 15 N -0.92 -26.06 10.09 55.49 0.56 -25.50 16 16 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C 0.12 2.47 6.82 -2.90 -0.02 2.45 16 21 C -0.19 -2.36 9.98 -39.41 -0.39 -2.76 16 22 C -0.02 -0.18 9.77 -39.60 -0.39 -0.57 16 23 C -0.17 -2.20 6.24 -39.36 -0.25 -2.44 16 24 Br -0.05 -0.57 33.15 -68.01 -2.25 -2.82 16 25 H 0.06 0.65 7.67 -51.93 -0.40 0.25 16 26 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.56 7.65 -51.93 -0.40 0.17 16 28 H 0.15 2.02 3.85 -52.49 -0.20 1.82 16 29 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.12 3.00 5.87 -51.93 -0.30 2.70 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.02 0.48 7.80 -51.93 -0.41 0.08 16 35 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 36 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.14 1.23 8.06 -52.48 -0.42 0.80 16 LS Contribution 324.23 15.07 4.89 4.89 Total: -1.00 -29.51 324.23 -8.71 -38.23 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -4.53 Total: -0.30 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -1.39 Total: -6.28 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: -0.02 Total: -41.09 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.38 Total: -9.16 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 35 Polarization: -0.57 SS G_CDS: -2.25 Total: -2.82 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.51 -8.71 -38.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225428539.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.697 kcal (2) G-P(sol) polarization free energy of solvation -29.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds