Wall clock time and date at job start Tue Mar 31 2020 23:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35921 * 117.00147 * 2 1 4 4 C 1.38630 * 120.02854 * 359.72754 * 3 2 1 5 5 C 1.38620 * 119.90266 * 179.80902 * 4 3 2 6 6 O 1.35911 * 120.02184 * 180.20219 * 5 4 3 7 7 C 1.42896 * 117.00146 * 354.71330 * 6 5 4 8 8 H 1.09001 * 110.64023 * 326.92429 * 7 6 5 9 9 C 1.55157 * 110.71993 * 203.78504 * 7 6 5 10 10 C 1.54908 * 101.58164 * 206.13311 * 9 7 6 11 11 N 1.47426 * 104.83155 * 37.00830 * 10 9 7 12 12 C 1.36938 * 125.64942 * 155.83846 * 11 10 9 13 13 H 1.08005 * 120.00184 * 180.02562 * 12 11 10 14 14 C 1.38821 * 119.99944 * 0.02562 * 12 11 10 15 15 N 1.31611 * 119.99725 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99954 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47476 * 59.99493 * 16 14 12 18 18 H 1.48500 * 109.47192 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47095 * 299.99640 * 16 14 12 20 20 C 1.47316 * 108.73863 * 335.71418 * 11 10 9 21 21 C 1.38783 * 119.95823 * 0.42439 * 5 4 3 22 22 C 1.38164 * 120.05908 * 359.80068 * 21 5 4 23 23 C 1.38256 * 120.10253 * 0.02562 * 22 21 5 24 24 Br 1.89102 * 119.98385 * 179.97438 * 23 22 21 25 25 H 1.08998 * 109.47020 * 299.99978 * 1 2 3 26 26 H 1.09002 * 109.47104 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46833 * 59.99634 * 1 2 3 28 28 H 1.08001 * 120.05027 * 359.97438 * 4 3 2 29 29 H 1.09005 * 111.00147 * 324.20206 * 9 7 6 30 30 H 1.08993 * 111.01000 * 88.05996 * 9 7 6 31 31 H 1.09003 * 110.37064 * 155.84473 * 10 9 7 32 32 H 1.09003 * 110.36944 * 278.06154 * 10 9 7 33 33 H 0.97003 * 119.99850 * 179.97438 * 15 14 12 34 34 H 1.08996 * 110.06856 * 241.87490 * 20 11 10 35 35 H 1.09001 * 109.85059 * 120.61182 * 20 11 10 36 36 H 1.07996 * 119.96724 * 179.79005 * 21 5 4 37 37 H 1.08007 * 119.94915 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2917 2.3741 -0.0057 5 6 1.9237 3.6078 -0.0017 6 8 1.1864 4.7496 -0.0031 7 6 -0.2301 4.6070 -0.1261 8 1 -0.4770 3.7479 -0.7498 9 6 -0.8644 5.9018 -0.6993 10 6 -2.3024 5.8225 -0.1288 11 7 -2.1418 5.2539 1.2218 12 6 -3.0143 5.4156 2.2648 13 1 -2.8054 4.9566 3.2198 14 6 -4.1674 6.1696 2.0946 15 7 -4.4218 6.7294 0.9309 16 14 -5.3573 6.3908 3.5174 17 1 -4.6590 7.0533 4.6482 18 1 -6.5002 7.2323 3.0807 19 1 -5.8582 5.0630 3.9548 20 6 -0.8889 4.4802 1.2637 21 6 3.3098 3.6764 -0.0009 22 6 4.0601 2.5162 0.0001 23 6 3.4323 1.2844 -0.0003 24 35 4.4625 -0.3014 0.0003 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 0.2131 2.3191 -0.0106 29 1 -0.3461 6.7871 -0.3305 30 1 -0.8748 5.8826 -1.7890 31 1 -2.7433 6.8177 -0.0715 32 1 -2.9199 5.1699 -0.7460 33 1 -5.2277 7.2559 0.8118 34 1 -1.1028 3.4332 1.4784 35 1 -0.2265 4.8894 2.0266 36 1 3.8024 4.6375 -0.0012 37 1 5.1388 2.5716 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225428539.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:32 Heat of formation + Delta-G solvation = -29.061299 kcal Electronic energy + Delta-G solvation = -21622.450992 eV Core-core repulsion = 18219.292074 eV Total energy + Delta-G solvation = -3403.158918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.76753 -40.29957 -38.65147 -37.39524 -34.35245 -32.81144 -31.47808 -31.23042 -29.81824 -29.28177 -27.97075 -26.49498 -23.77645 -23.34938 -22.17171 -21.65662 -19.97232 -19.06936 -18.01984 -17.20477 -16.96848 -16.89698 -16.71686 -16.46298 -15.85841 -15.49112 -15.15167 -15.10087 -14.36632 -14.18526 -13.83108 -13.69285 -13.36939 -13.11913 -12.98237 -12.76620 -12.60113 -12.38756 -12.21838 -12.15766 -12.08906 -12.02418 -11.80836 -11.46416 -11.13926 -11.12453 -10.78737 -9.80014 -9.05016 -8.97403 -7.82609 -5.28233 0.06501 0.23196 0.71412 1.46636 1.49278 1.55802 2.01091 2.15295 2.46586 2.50038 3.28492 3.51201 3.57508 3.66787 3.81552 3.87900 3.99221 4.00252 4.28102 4.28585 4.31876 4.42264 4.54222 4.63976 4.67870 4.76769 4.80659 4.93328 4.95816 5.07754 5.18083 5.40709 5.47318 5.53365 5.72235 6.02895 6.23870 6.34112 7.04694 7.69390 8.31771 9.19262 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.024827 B = 0.002701 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.551082 B =10364.618019 C =10913.023858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.312 6.312 3 C 0.184 3.816 4 C -0.300 4.300 5 C 0.173 3.827 6 O -0.303 6.303 7 C 0.084 3.916 8 H 0.095 0.905 9 C -0.122 4.122 10 C 0.154 3.846 11 N -0.622 5.622 12 C -0.247 4.247 13 H 0.079 0.921 14 C -0.060 4.060 15 N -0.946 5.946 16 Si 0.982 3.018 17 H -0.278 1.278 18 H -0.291 1.291 19 H -0.277 1.277 20 C 0.118 3.882 21 C -0.187 4.187 22 C -0.007 4.007 23 C -0.181 4.181 24 Br -0.038 7.038 25 H 0.056 0.944 26 H 0.129 0.871 27 H 0.063 0.937 28 H 0.144 0.856 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.002 0.998 33 H 0.250 0.750 34 H 0.032 0.968 35 H 0.027 0.973 36 H 0.158 0.842 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.103 -13.134 -5.249 22.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.224 6.224 3 C 0.136 3.864 4 C -0.320 4.320 5 C 0.126 3.874 6 O -0.215 6.215 7 C 0.028 3.972 8 H 0.113 0.887 9 C -0.161 4.161 10 C 0.030 3.970 11 N -0.350 5.350 12 C -0.375 4.375 13 H 0.097 0.903 14 C -0.253 4.253 15 N -0.595 5.595 16 Si 0.809 3.191 17 H -0.204 1.204 18 H -0.217 1.217 19 H -0.203 1.203 20 C -0.007 4.007 21 C -0.206 4.206 22 C -0.027 4.027 23 C -0.261 4.261 24 Br 0.046 6.954 25 H 0.074 0.926 26 H 0.147 0.853 27 H 0.081 0.919 28 H 0.161 0.839 29 H 0.090 0.910 30 H 0.117 0.883 31 H 0.100 0.900 32 H 0.020 0.980 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.045 0.955 36 H 0.176 0.824 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 18.421 -13.631 -5.186 23.495 hybrid contribution -1.676 0.513 0.751 1.907 sum 16.745 -13.118 -4.435 21.729 Atomic orbital electron populations 1.23383 0.76343 1.05999 1.02015 1.86154 1.23212 1.25548 1.87508 1.18485 0.90951 0.84655 0.92334 1.21400 1.01310 0.91656 1.17678 1.19226 0.92061 0.84773 0.91353 1.86177 1.19501 1.29245 1.86581 1.23449 0.76785 1.00602 0.96398 0.88728 1.23031 0.96109 0.95822 1.01109 1.21786 0.91681 1.00030 0.83537 1.44705 1.21708 1.58787 1.09786 1.19384 1.00038 1.26897 0.91199 0.90312 1.25618 0.99904 1.00003 0.99786 1.69976 1.27257 1.38649 1.23616 0.85113 0.77987 0.77673 0.78301 1.20413 1.21652 1.20341 1.21826 0.88264 0.94893 0.95742 1.20614 0.89639 1.00527 1.09819 1.21033 1.01369 0.88093 0.92160 1.21081 0.90935 0.93968 1.20081 1.96627 1.68778 1.31830 1.98117 0.92567 0.85337 0.91873 0.83877 0.90956 0.88270 0.89957 0.98033 0.93990 0.95054 0.95544 0.82446 0.80980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.31 -7.59 9.83 -92.66 -0.91 -8.50 16 3 C 0.18 4.75 6.67 22.50 0.15 4.90 16 4 C -0.30 -8.09 7.89 22.45 0.18 -7.92 16 5 C 0.17 4.79 6.67 22.49 0.15 4.94 16 6 O -0.30 -9.60 9.86 -92.55 -0.91 -10.51 16 7 C 0.08 2.85 2.74 31.78 0.09 2.94 16 8 H 0.10 2.89 6.25 -2.39 -0.01 2.87 16 9 C -0.12 -4.42 6.81 31.99 0.22 -4.21 16 10 C 0.15 7.32 5.89 86.85 0.51 7.83 16 11 N -0.62 -31.63 3.40 -691.21 -2.35 -33.99 16 12 C -0.25 -13.67 10.28 84.04 0.86 -12.81 16 13 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 14 C -0.06 -3.33 5.49 84.87 0.47 -2.87 16 15 N -0.95 -54.70 10.09 21.65 0.22 -54.48 16 16 Si 0.98 44.67 29.55 68.60 2.03 46.70 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 18 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 19 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 20 C 0.12 4.89 6.82 86.67 0.59 5.48 16 21 C -0.19 -4.19 9.98 22.38 0.22 -3.97 16 22 C -0.01 -0.14 9.77 22.26 0.22 0.08 16 23 C -0.18 -4.24 6.24 22.41 0.14 -4.10 16 24 Br -0.04 -0.80 33.15 -20.37 -0.68 -1.48 16 25 H 0.06 1.13 7.67 -2.39 -0.02 1.11 16 26 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.06 1.14 7.65 -2.38 -0.02 1.12 16 28 H 0.14 3.84 3.85 -2.91 -0.01 3.83 16 29 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 30 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 31 H 0.08 4.46 5.87 -2.39 -0.01 4.45 16 32 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 34 H 0.03 1.25 7.80 -2.39 -0.02 1.23 16 35 H 0.03 1.15 8.06 -2.39 -0.02 1.13 16 36 H 0.16 2.93 8.06 -2.91 -0.02 2.90 16 37 H 0.17 2.33 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -63.70 324.23 3.39 -60.31 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 1.09 Total: 10.21 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 4.91 Total: -8.26 kcal Atomic # 7 Polarization: -86.33 SS G_CDS: -2.13 Total: -88.47 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -1.82 Total: -19.01 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 35 Polarization: -0.80 SS G_CDS: -0.68 Total: -1.48 kcal Total: -63.70 3.39 -60.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225428539.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.252 kcal (2) G-P(sol) polarization free energy of solvation -63.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds