Wall clock time and date at job start Tue Mar 31 2020 23:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35999 * 116.99962 * 2 1 4 4 C 1.38684 * 120.00189 * 0.02562 * 3 2 1 5 5 C 1.38137 * 120.00698 * 180.02562 * 4 3 2 6 6 C 1.38713 * 120.01691 * 0.02562 * 5 4 3 7 7 O 1.35975 * 119.99748 * 180.02562 * 6 5 4 8 8 C 1.42903 * 117.00167 * 185.28163 * 7 6 5 9 9 H 1.08999 * 110.88495 * 38.65469 * 8 7 6 10 10 C 1.55162 * 111.00650 * 162.57741 * 8 7 6 11 11 C 1.54336 * 103.01984 * 153.38034 * 10 8 7 12 12 N 1.47016 * 107.26657 * 338.14081 * 11 10 8 13 13 C 1.36939 * 125.64778 * 178.85243 * 12 11 10 14 14 H 1.07998 * 120.00150 * 179.69433 * 13 12 11 15 15 C 1.38812 * 120.00003 * 359.68872 * 13 12 11 16 16 N 1.31619 * 119.99919 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00063 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47348 * 180.02562 * 17 15 13 19 19 H 1.48505 * 109.47135 * 299.99605 * 17 15 13 20 20 H 1.48493 * 109.47410 * 60.00204 * 17 15 13 21 21 C 1.47427 * 108.70341 * 358.58413 * 12 11 10 22 22 C 1.38674 * 120.00768 * 0.28115 * 6 5 4 23 23 C 1.38226 * 119.98833 * 359.42440 * 22 6 5 24 24 Br 1.89099 * 120.00993 * 180.29603 * 23 22 6 25 25 H 1.09005 * 109.47047 * 60.00099 * 1 2 3 26 26 H 1.09000 * 109.47293 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47326 * 300.00303 * 1 2 3 28 28 H 1.07993 * 119.99647 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.99063 * 180.02562 * 5 4 3 30 30 H 1.09004 * 110.71732 * 271.94172 * 10 8 7 31 31 H 1.09000 * 110.71715 * 35.03150 * 10 8 7 32 32 H 1.09005 * 109.98738 * 218.66337 * 11 10 8 33 33 H 1.08996 * 109.77442 * 97.50320 * 11 10 8 34 34 H 0.97003 * 120.00403 * 179.97438 * 16 15 13 35 35 H 1.08999 * 110.36370 * 143.19561 * 21 12 11 36 36 H 1.08996 * 110.36666 * 265.51521 * 21 12 11 37 37 H 1.07998 * 120.00836 * 179.70256 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2911 2.3749 0.0005 5 6 1.9181 3.6058 0.0000 6 6 3.3033 3.6789 -0.0016 7 8 3.9201 4.8907 -0.0016 8 6 5.3442 4.8939 -0.1205 9 1 5.6774 4.1271 -0.8199 10 6 5.8642 6.2943 -0.5400 11 6 7.2965 6.3198 0.0343 12 7 7.3503 5.3264 1.1168 13 6 8.4542 5.0244 1.8687 14 1 8.3897 4.2791 2.6476 15 6 9.6563 5.6761 1.6296 16 7 9.7349 6.5847 0.6806 17 14 11.1623 5.2637 2.6548 18 1 12.3096 6.0924 2.2048 19 1 10.8798 5.5455 4.0852 20 1 11.4949 3.8259 2.4898 21 6 6.0173 4.7139 1.2630 22 6 4.0592 2.5163 -0.0086 23 6 3.4321 1.2845 -0.0019 24 35 4.4623 -0.3013 -0.0029 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.2127 2.3183 0.0014 29 1 1.3297 4.5114 0.0008 30 1 5.8797 6.3906 -1.6257 31 1 5.2564 7.0811 -0.0931 32 1 7.5222 7.3106 0.4287 33 1 8.0112 6.0574 -0.7456 34 1 10.5748 7.0405 0.5138 35 1 6.1108 3.6551 1.5045 36 1 5.4449 5.2305 2.0335 37 1 5.1377 2.5732 -0.0147 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225712221.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:43 Heat of formation + Delta-G solvation = -11.028064 kcal Electronic energy + Delta-G solvation = -21409.719150 eV Core-core repulsion = 18007.342212 eV Total energy + Delta-G solvation = -3402.376938 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.56421 -39.25008 -37.17788 -35.81590 -32.59811 -32.15213 -29.87143 -29.46128 -28.98486 -27.74164 -26.90194 -24.54541 -22.79044 -22.17048 -20.34273 -20.11629 -18.49313 -17.65504 -17.10383 -16.48028 -15.99335 -15.24231 -14.83831 -14.73951 -14.52462 -13.98349 -13.81197 -13.47678 -12.98208 -12.94765 -12.76050 -12.47695 -12.07672 -12.04666 -11.66844 -11.20720 -10.99938 -10.91847 -10.85168 -10.69333 -10.35834 -10.20231 -10.16877 -10.02636 -9.86444 -9.69177 -8.96362 -8.64293 -7.78268 -6.90878 -5.75628 -3.10373 0.93032 1.29002 1.63828 3.03089 3.36366 3.40463 3.44502 3.46029 3.49652 4.47541 4.56975 4.68100 4.89770 4.91674 4.96225 5.15122 5.20785 5.28232 5.36675 5.42472 5.50427 5.57443 5.66892 5.70935 5.99395 6.03047 6.16843 6.27873 6.39346 6.45445 6.53940 6.64158 7.07485 7.49044 7.52346 7.59466 7.77005 8.19243 9.16349 9.75922 10.39948 11.36111 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.016240 B = 0.003466 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.758109 B = 8075.901783 C = 9436.480701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.306 6.306 3 C 0.107 3.893 4 C -0.165 4.165 5 C -0.104 4.104 6 C 0.115 3.885 7 O -0.301 6.301 8 C 0.063 3.937 9 H 0.080 0.920 10 C -0.133 4.133 11 C 0.178 3.822 12 N -0.601 5.601 13 C -0.232 4.232 14 H 0.079 0.921 15 C -0.006 4.006 16 N -0.922 5.922 17 Si 0.914 3.086 18 H -0.290 1.290 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.118 3.882 22 C -0.143 4.143 23 C -0.082 4.082 24 Br -0.036 7.036 25 H 0.055 0.945 26 H 0.100 0.900 27 H 0.055 0.945 28 H 0.140 0.860 29 H 0.139 0.861 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.254 0.746 35 H 0.043 0.957 36 H 0.030 0.970 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.391 -11.593 -4.145 22.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.220 6.220 3 C 0.060 3.940 4 C -0.184 4.184 5 C -0.123 4.123 6 C 0.068 3.932 7 O -0.214 6.214 8 C 0.006 3.994 9 H 0.098 0.902 10 C -0.172 4.172 11 C 0.054 3.946 12 N -0.329 5.329 13 C -0.360 4.360 14 H 0.097 0.903 15 C -0.202 4.202 16 N -0.570 5.570 17 Si 0.744 3.256 18 H -0.215 1.215 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.009 4.009 22 C -0.163 4.163 23 C -0.163 4.163 24 Br 0.049 6.951 25 H 0.073 0.927 26 H 0.118 0.882 27 H 0.074 0.926 28 H 0.158 0.842 29 H 0.157 0.843 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.048 0.952 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -18.758 -12.109 -4.126 22.705 hybrid contribution 0.503 0.192 0.529 0.755 sum -18.255 -11.917 -3.597 22.095 Atomic orbital electron populations 1.23065 0.78482 1.03993 1.01299 1.86182 1.21111 1.25782 1.88897 1.18424 0.90532 0.85081 0.99923 1.20959 0.99955 0.90873 1.06621 1.20348 0.91568 0.98108 1.02254 1.18854 0.91972 0.84820 0.97547 1.86135 1.22714 1.25204 1.87364 1.23906 0.75932 1.00249 0.99286 0.90204 1.23019 0.99544 0.93996 1.00620 1.21217 0.88782 0.94042 0.90597 1.44324 1.04987 1.44004 1.39617 1.19019 0.86714 1.18504 1.11720 0.90311 1.24809 0.97850 0.98672 0.98889 1.69928 1.25516 1.28323 1.33199 0.86164 0.82209 0.77653 0.79528 1.21535 1.21088 1.21039 1.21986 0.88214 0.97210 0.93519 1.21303 1.01467 0.89880 1.03671 1.20759 0.91028 0.92833 1.11646 1.96700 1.69614 1.31105 1.97670 0.92656 0.88197 0.92611 0.84248 0.84332 0.91280 0.91100 0.93205 0.92960 0.93563 0.93837 0.95185 0.83157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.47 9.83 -19.74 -0.19 -3.66 16 3 C 0.11 1.35 6.68 -39.22 -0.26 1.09 16 4 C -0.16 -1.76 9.03 -39.45 -0.36 -2.12 16 5 C -0.10 -1.25 9.98 -39.44 -0.39 -1.64 16 6 C 0.12 1.70 6.63 -39.24 -0.26 1.44 16 7 O -0.30 -4.99 9.96 -19.66 -0.20 -5.18 16 8 C 0.06 1.14 2.82 -24.58 -0.07 1.07 16 9 H 0.08 1.41 6.61 -51.93 -0.34 1.06 16 10 C -0.13 -2.49 6.68 -24.89 -0.17 -2.66 16 11 C 0.18 4.26 5.37 -3.06 -0.02 4.24 16 12 N -0.60 -15.34 3.39 -170.07 -0.58 -15.92 16 13 C -0.23 -6.45 10.28 -15.06 -0.15 -6.60 16 14 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 15 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 16 N -0.92 -26.77 10.31 55.49 0.57 -26.20 16 17 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C 0.12 2.48 6.59 -2.53 -0.02 2.46 16 22 C -0.14 -2.14 8.45 -39.42 -0.33 -2.48 16 23 C -0.08 -1.17 6.24 -39.39 -0.25 -1.42 16 24 Br -0.04 -0.50 33.15 -68.01 -2.25 -2.75 16 25 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 26 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 28 H 0.14 1.04 6.29 -52.49 -0.33 0.71 16 29 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.05 1.31 7.52 -51.93 -0.39 0.92 16 33 H 0.05 1.36 7.37 -51.93 -0.38 0.98 16 34 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 35 H 0.04 0.89 7.24 -51.93 -0.38 0.52 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.15 2.39 5.30 -52.49 -0.28 2.11 16 LS Contribution 323.99 15.07 4.88 4.88 Total: -1.00 -30.64 323.99 -8.72 -39.36 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -4.56 Total: -1.84 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -1.38 Total: -5.70 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.00 Total: -42.12 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.39 Total: -8.85 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -2.25 Total: -2.75 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.64 -8.72 -39.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225712221.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.334 kcal (2) G-P(sol) polarization free energy of solvation -30.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds