Wall clock time and date at job start Tue Mar 31 2020 23:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35999 * 116.99962 * 2 1 4 4 C 1.38684 * 120.00189 * 0.02562 * 3 2 1 5 5 C 1.38137 * 120.00698 * 180.02562 * 4 3 2 6 6 C 1.38713 * 120.01691 * 0.02562 * 5 4 3 7 7 O 1.35975 * 119.99748 * 180.02562 * 6 5 4 8 8 C 1.42903 * 117.00167 * 185.28163 * 7 6 5 9 9 H 1.08999 * 110.88495 * 38.65469 * 8 7 6 10 10 C 1.55162 * 111.00650 * 162.57741 * 8 7 6 11 11 C 1.54336 * 103.01984 * 153.38034 * 10 8 7 12 12 N 1.47016 * 107.26657 * 338.14081 * 11 10 8 13 13 C 1.36939 * 125.64778 * 178.85243 * 12 11 10 14 14 H 1.07998 * 120.00150 * 179.69433 * 13 12 11 15 15 C 1.38812 * 120.00003 * 359.68872 * 13 12 11 16 16 N 1.31619 * 119.99919 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00063 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47348 * 180.02562 * 17 15 13 19 19 H 1.48505 * 109.47135 * 299.99605 * 17 15 13 20 20 H 1.48493 * 109.47410 * 60.00204 * 17 15 13 21 21 C 1.47427 * 108.70341 * 358.58413 * 12 11 10 22 22 C 1.38674 * 120.00768 * 0.28115 * 6 5 4 23 23 C 1.38226 * 119.98833 * 359.42440 * 22 6 5 24 24 Br 1.89099 * 120.00993 * 180.29603 * 23 22 6 25 25 H 1.09005 * 109.47047 * 60.00099 * 1 2 3 26 26 H 1.09000 * 109.47293 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47326 * 300.00303 * 1 2 3 28 28 H 1.07993 * 119.99647 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.99063 * 180.02562 * 5 4 3 30 30 H 1.09004 * 110.71732 * 271.94172 * 10 8 7 31 31 H 1.09000 * 110.71715 * 35.03150 * 10 8 7 32 32 H 1.09005 * 109.98738 * 218.66337 * 11 10 8 33 33 H 1.08996 * 109.77442 * 97.50320 * 11 10 8 34 34 H 0.97003 * 120.00403 * 179.97438 * 16 15 13 35 35 H 1.08999 * 110.36370 * 143.19561 * 21 12 11 36 36 H 1.08996 * 110.36666 * 265.51521 * 21 12 11 37 37 H 1.07998 * 120.00836 * 179.70256 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2911 2.3749 0.0005 5 6 1.9181 3.6058 0.0000 6 6 3.3033 3.6789 -0.0016 7 8 3.9201 4.8907 -0.0016 8 6 5.3442 4.8939 -0.1205 9 1 5.6774 4.1271 -0.8199 10 6 5.8642 6.2943 -0.5400 11 6 7.2965 6.3198 0.0343 12 7 7.3503 5.3264 1.1168 13 6 8.4542 5.0244 1.8687 14 1 8.3897 4.2791 2.6476 15 6 9.6563 5.6761 1.6296 16 7 9.7349 6.5847 0.6806 17 14 11.1623 5.2637 2.6548 18 1 12.3096 6.0924 2.2048 19 1 10.8798 5.5455 4.0852 20 1 11.4949 3.8259 2.4898 21 6 6.0173 4.7139 1.2630 22 6 4.0592 2.5163 -0.0086 23 6 3.4321 1.2845 -0.0019 24 35 4.4623 -0.3013 -0.0029 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.2127 2.3183 0.0014 29 1 1.3297 4.5114 0.0008 30 1 5.8797 6.3906 -1.6257 31 1 5.2564 7.0811 -0.0931 32 1 7.5222 7.3106 0.4287 33 1 8.0112 6.0574 -0.7456 34 1 10.5748 7.0405 0.5138 35 1 6.1108 3.6551 1.5045 36 1 5.4449 5.2305 2.0335 37 1 5.1377 2.5732 -0.0147 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225712221.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:42 Heat of formation + Delta-G solvation = -29.109850 kcal Electronic energy + Delta-G solvation = -21410.503236 eV Core-core repulsion = 18007.342212 eV Total energy + Delta-G solvation = -3403.161023 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.60710 -40.36826 -38.57608 -37.11897 -34.32775 -33.38882 -31.33932 -30.74509 -30.08256 -29.17603 -27.87200 -26.45534 -23.85324 -23.29100 -22.07788 -21.63389 -19.49301 -19.05569 -18.68557 -17.56789 -16.83453 -16.74650 -16.51629 -15.96017 -15.73655 -15.50159 -15.05540 -14.64409 -14.28391 -14.04426 -13.95181 -13.91635 -13.77736 -13.32700 -12.93717 -12.77605 -12.64997 -12.15355 -12.11865 -12.09016 -11.97438 -11.91124 -11.75169 -11.53472 -11.22645 -11.13103 -10.73081 -9.97939 -8.98123 -8.80399 -7.88416 -5.25668 -0.05284 0.28788 0.61479 1.45942 1.49161 1.55376 2.05641 2.31834 2.48174 2.51226 3.30418 3.58382 3.65248 3.68695 3.88893 3.90475 3.94654 4.03270 4.36881 4.39969 4.44288 4.47465 4.55206 4.63203 4.71792 4.80776 4.82438 4.94749 4.97180 5.09670 5.16031 5.40213 5.43122 5.58366 5.69708 6.13111 6.24634 6.41001 7.05614 7.70165 8.33621 9.21675 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.016240 B = 0.003466 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.758109 B = 8075.901783 C = 9436.480701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.323 6.323 3 C 0.113 3.887 4 C -0.152 4.152 5 C -0.092 4.092 6 C 0.087 3.913 7 O -0.303 6.303 8 C 0.084 3.916 9 H 0.084 0.916 10 C -0.119 4.119 11 C 0.185 3.815 12 N -0.623 5.623 13 C -0.250 4.250 14 H 0.081 0.919 15 C -0.060 4.060 16 N -0.948 5.948 17 Si 0.980 3.020 18 H -0.291 1.291 19 H -0.277 1.277 20 H -0.277 1.277 21 C 0.117 3.883 22 C -0.154 4.154 23 C -0.105 4.105 24 Br -0.043 7.043 25 H 0.072 0.928 26 H 0.117 0.883 27 H 0.070 0.930 28 H 0.180 0.820 29 H 0.164 0.836 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.017 0.983 33 H 0.023 0.977 34 H 0.250 0.750 35 H 0.044 0.956 36 H 0.027 0.973 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.091 -12.403 -4.150 25.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.237 6.237 3 C 0.065 3.935 4 C -0.171 4.171 5 C -0.111 4.111 6 C 0.041 3.959 7 O -0.216 6.216 8 C 0.027 3.973 9 H 0.101 0.899 10 C -0.157 4.157 11 C 0.060 3.940 12 N -0.351 5.351 13 C -0.378 4.378 14 H 0.099 0.901 15 C -0.253 4.253 16 N -0.597 5.597 17 Si 0.808 3.192 18 H -0.217 1.217 19 H -0.203 1.203 20 H -0.202 1.202 21 C -0.009 4.009 22 C -0.174 4.174 23 C -0.186 4.186 24 Br 0.042 6.958 25 H 0.090 0.910 26 H 0.136 0.864 27 H 0.089 0.911 28 H 0.198 0.802 29 H 0.182 0.818 30 H 0.114 0.886 31 H 0.100 0.900 32 H 0.035 0.965 33 H 0.041 0.959 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.045 0.955 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -21.507 -12.946 -4.126 25.439 hybrid contribution 1.155 0.326 0.550 1.321 sum -20.351 -12.620 -3.576 24.212 Atomic orbital electron populations 1.23441 0.75914 1.05840 1.02776 1.86181 1.23765 1.25270 1.88446 1.18601 0.90102 0.86316 0.98492 1.21369 1.01751 0.89438 1.04542 1.20700 0.90375 0.99723 1.00286 1.19121 0.93086 0.83878 0.99810 1.86095 1.21081 1.26352 1.88073 1.23462 0.77160 0.99699 0.97021 0.89863 1.22834 0.96065 0.94839 1.02002 1.20969 0.91614 0.91950 0.89440 1.44598 1.06051 1.44720 1.39694 1.19392 0.87888 1.18459 1.12089 0.90114 1.25648 1.00631 0.98823 1.00239 1.70139 1.25745 1.29215 1.34566 0.85140 0.78455 0.77518 0.78136 1.21723 1.20319 1.20242 1.22064 0.86593 0.96714 0.95525 1.21145 1.00700 0.90676 1.04891 1.20871 0.92108 0.92326 1.13258 1.96670 1.70096 1.31299 1.97755 0.90991 0.86449 0.91134 0.80248 0.81818 0.88623 0.89984 0.96461 0.95877 0.94107 0.93777 0.95548 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.32 -6.46 9.83 -93.54 -0.92 -7.38 16 3 C 0.11 2.55 6.68 22.50 0.15 2.70 16 4 C -0.15 -2.66 9.03 22.35 0.20 -2.45 16 5 C -0.09 -1.91 9.98 22.36 0.22 -1.69 16 6 C 0.09 2.44 6.63 22.49 0.15 2.58 16 7 O -0.30 -9.58 9.96 -93.27 -0.93 -10.51 16 8 C 0.08 3.00 2.82 31.99 0.09 3.09 16 9 H 0.08 2.93 6.61 -2.39 -0.02 2.92 16 10 C -0.12 -4.40 6.68 31.79 0.21 -4.18 16 11 C 0.19 9.14 5.37 86.73 0.47 9.60 16 12 N -0.62 -32.66 3.39 -691.98 -2.35 -35.01 16 13 C -0.25 -14.24 10.28 84.03 0.86 -13.37 16 14 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 15 C -0.06 -3.43 5.49 84.86 0.47 -2.97 16 16 N -0.95 -56.81 10.31 21.65 0.22 -56.58 16 17 Si 0.98 46.00 29.55 68.60 2.03 48.03 16 18 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 C 0.12 5.00 6.59 86.85 0.57 5.58 16 22 C -0.15 -4.56 8.45 22.37 0.19 -4.37 16 23 C -0.11 -2.91 6.24 22.39 0.14 -2.77 16 24 Br -0.04 -1.19 33.15 -20.37 -0.68 -1.86 16 25 H 0.07 0.47 7.66 -2.38 -0.02 0.45 16 26 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 0.49 7.66 -2.39 -0.02 0.47 16 28 H 0.18 1.65 6.29 -2.91 -0.02 1.64 16 29 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 30 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 31 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.02 0.95 7.52 -2.38 -0.02 0.93 16 33 H 0.02 1.25 7.37 -2.39 -0.02 1.24 16 34 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 35 H 0.04 1.86 7.24 -2.39 -0.02 1.84 16 36 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.13 4.31 5.30 -2.91 -0.02 4.30 16 Total: -1.00 -68.14 323.99 3.30 -64.84 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: 1.09 Total: 5.47 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 4.84 Total: -7.00 kcal Atomic # 7 Polarization: -89.47 SS G_CDS: -2.13 Total: -91.59 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -1.85 Total: -17.89 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Atomic # 35 Polarization: -1.19 SS G_CDS: -0.68 Total: -1.86 kcal Total: -68.14 3.30 -64.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225712221.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.732 kcal (2) G-P(sol) polarization free energy of solvation -68.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds